Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 69


Adaptation in plant genomes: Bigger is different.

Mei W, Stetter MG, Gates DJ, Stitzer MC, Ross-Ibarra J.

Am J Bot. 2018 Jan;105(1):16-19. doi: 10.1002/ajb2.1002. Epub 2018 Feb 13. No abstract available.


Construction of the third generation Zea mays haplotype map.

Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, Wang B, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, Jiao Y, Doebley JF, Ross-Ibarra J, Lorant A, Buffalo V, Romay MC, Buckler ES, Ware D, Lai J, Sun Q, Xu Y.

Gigascience. 2017 Dec 30. doi: 10.1093/gigascience/gix134. [Epub ahead of print]


The interplay of demography and selection during maize domestication and expansion.

Wang L, Beissinger TM, Lorant A, Ross-Ibarra C, Ross-Ibarra J, Hufford MB.

Genome Biol. 2017 Nov 13;18(1):215. doi: 10.1186/s13059-017-1346-4.


Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize.

Yang J, Mezmouk S, Baumgarten A, Buckler ES, Guill KE, McMullen MD, Mumm RH, Ross-Ibarra J.

PLoS Genet. 2017 Sep 27;13(9):e1007019. doi: 10.1371/journal.pgen.1007019. eCollection 2017 Sep.


How to make a domesticate.

Stetter MG, Gates DJ, Mei W, Ross-Ibarra J.

Curr Biol. 2017 Sep 11;27(17):R896-R900. doi: 10.1016/j.cub.2017.06.048.


The potential role of genetic assimilation during maize domestication.

Lorant A, Pedersen S, Holst I, Hufford MB, Winter K, Piperno D, Ross-Ibarra J.

PLoS One. 2017 Sep 8;12(9):e0184202. doi: 10.1371/journal.pone.0184202. eCollection 2017.


Allele specific expression analysis identifies regulatory variation associated with stress-related genes in the Mexican highland maize landrace Palomero Toluqueño.

Aguilar-Rangel MR, Chávez Montes RA, González-Segovia E, Ross-Ibarra J, Simpson JK, Sawers RJH.

PeerJ. 2017 Aug 23;5:e3737. doi: 10.7717/peerj.3737. eCollection 2017.


Advances and Limits of Using Population Genetics to Understand Local Adaptation: (Trends in Ecology & Evolution 29, 673-680; 2014).

Tiffin P, Ross-Ibarra J.

Trends Ecol Evol. 2017 Oct;32(10):801-802. doi: 10.1016/j.tree.2017.08.001. Epub 2017 Aug 17. No abstract available.


Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America.

Swarts K, Gutaker RM, Benz B, Blake M, Bukowski R, Holland J, Kruse-Peeples M, Lepak N, Prim L, Romay MC, Ross-Ibarra J, Sanchez-Gonzalez JJ, Schmidt C, Schuenemann VJ, Krause J, Matson RG, Weigel D, Buckler ES, Burbano HA.

Science. 2017 Aug 4;357(6350):512-515. doi: 10.1126/science.aam9425.


Improved maize reference genome with single-molecule technologies.

Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, Schneider KL, Wolfgruber TK, May MR, Springer NM, Antoniou E, McCombie WR, Presting GG, McMullen M, Ross-Ibarra J, Dawe RK, Hastie A, Rank DR, Ware D.

Nature. 2017 Jun 22;546(7659):524-527. doi: 10.1038/nature22971. Epub 2017 Jun 12.


Genomic abundance is not predictive of tandem repeat localization in grass genomes.

Bilinski P, Han Y, Hufford MB, Lorant A, Zhang P, Estep MC, Jiang J, Ross-Ibarra J.

PLoS One. 2017 Jun 1;12(6):e0177896. doi: 10.1371/journal.pone.0177896. eCollection 2017.


Gene Fractionation and Function in the Ancient Subgenomes of Maize.

Renny-Byfield S, Rodgers-Melnick E, Ross-Ibarra J.

Mol Biol Evol. 2017 Aug 1;34(8):1825-1832. doi: 10.1093/molbev/msx121.


Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication.

Ramos-Madrigal J, Smith BD, Moreno-Mayar JV, Gopalakrishnan S, Ross-Ibarra J, Gilbert MTP, Wales N.

Curr Biol. 2016 Dec 5;26(23):3195-3201. doi: 10.1016/j.cub.2016.09.036. Epub 2016 Nov 17.


Evolutionary Genomics of Peach and Almond Domestication.

Velasco D, Hough J, Aradhya M, Ross-Ibarra J.

G3 (Bethesda). 2016 Dec 7;6(12):3985-3993. doi: 10.1534/g3.116.032672.


angsd-wrapper: utilities for analysing next-generation sequencing data.

Durvasula A, Hoffman PJ, Kent TV, Liu C, Kono TJ, Morrell PL, Ross-Ibarra J.

Mol Ecol Resour. 2016 Nov;16(6):1449-1454. doi: 10.1111/1755-0998.12578. Epub 2016 Aug 29.


Recent demography drives changes in linked selection across the maize genome.

Beissinger TM, Wang L, Crosby K, Durvasula A, Hufford MB, Ross-Ibarra J.

Nat Plants. 2016 Jun 13;2:16084. doi: 10.1038/nplants.2016.84.


High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events.

Wolfgruber TK, Nakashima MM, Schneider KL, Sharma A, Xie Z, Albert PS, Xu R, Bilinski P, Dawe RK, Ross-Ibarra J, Birchler JA, Presting GG.

Front Plant Sci. 2016 Mar 23;7:308. doi: 10.3389/fpls.2016.00308. eCollection 2016.


Maize diversity associated with social origin and environmental variation in Southern Mexico.

Orozco-Ramírez Q, Ross-Ibarra J, Santacruz-Varela A, Brush S.

Heredity (Edinb). 2016 May;116(5):477-84. doi: 10.1038/hdy.2016.10. Epub 2016 Feb 24.


Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport.

Sosso D, Luo D, Li QB, Sasse J, Yang J, Gendrot G, Suzuki M, Koch KE, McCarty DR, Chourey PS, Rogowsky PM, Ross-Ibarra J, Yang B, Frommer WB.

Nat Genet. 2015 Dec;47(12):1489-93. doi: 10.1038/ng.3422. Epub 2015 Nov 2.


Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress.

Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM.

PLoS Genet. 2015 Oct 9;11(10):e1005566. doi: 10.1371/journal.pgen.1005566. eCollection 2015 Oct. No abstract available.


The Genomic Impacts of Drift and Selection for Hybrid Performance in Maize.

Gerke JP, Edwards JW, Guill KE, Ross-Ibarra J, McMullen MD.

Genetics. 2015 Nov;201(3):1201-11. doi: 10.1534/genetics.115.182410. Epub 2015 Sep 18.


Independent Molecular Basis of Convergent Highland Adaptation in Maize.

Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J.

Genetics. 2015 Aug;200(4):1297-312. doi: 10.1534/genetics.115.178327. Epub 2015 Jun 15.


Natural variation in teosinte at the domestication locus teosinte branched1 (tb1).

Vann L, Kono T, Pyhäjärvi T, Hufford MB, Ross-Ibarra J.

PeerJ. 2015 Apr 16;3:e900. doi: 10.7717/peerj.900. eCollection 2015.


Genetic, evolutionary and plant breeding insights from the domestication of maize.

Hake S, Ross-Ibarra J.

Elife. 2015 Mar 25;4. doi: 10.7554/eLife.05861. Review.


Transposable elements contribute to activation of maize genes in response to abiotic stress.

Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM.

PLoS Genet. 2015 Jan 8;11(1):e1004915. doi: 10.1371/journal.pgen.1004915. eCollection 2015 Jan. Erratum in: PLoS Genet. 2015 Oct;11(10):e1005566.


The origin and evolution of maize in the Southwestern United States.

da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J, Gilbert MT.

Nat Plants. 2015 Jan 8;1:14003. doi: 10.1038/nplants.2014.3.


Reply to Brush et al.: Wake-up call for crop conservation science.

Dyer GA, López-Feldman A, Yúnez-Naude A, Taylor JE, Ross-Ibarra J.

Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):E2. doi: 10.1073/pnas.1422645112. Epub 2014 Dec 29. No abstract available.


Advances and limits of using population genetics to understand local adaptation.

Tiffin P, Ross-Ibarra J.

Trends Ecol Evol. 2014 Dec;29(12):673-80. doi: 10.1016/j.tree.2014.10.004. Epub 2014 Nov 1. Review. Erratum in: Trends Ecol Evol. 2017 Oct;32(10 ):801-802.


Diversity and evolution of centromere repeats in the maize genome.

Bilinski P, Distor K, Gutierrez-Lopez J, Mendoza GM, Shi J, Dawe RK, Ross-Ibarra J.

Chromosoma. 2015 Mar;124(1):57-65. doi: 10.1007/s00412-014-0483-8. Epub 2014 Sep 5.


The pattern and distribution of deleterious mutations in maize.

Mezmouk S, Ross-Ibarra J.

G3 (Bethesda). 2014 Jan 10;4(1):163-71. doi: 10.1534/g3.113.008870.


Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species.

Waters AJ, Bilinski P, Eichten SR, Vaughn MW, Ross-Ibarra J, Gehring M, Springer NM.

Proc Natl Acad Sci U S A. 2013 Nov 26;110(48):19639-44. doi: 10.1073/pnas.1309182110. Epub 2013 Nov 11.


Complex patterns of local adaptation in teosinte.

Pyhäjärvi T, Hufford MB, Mezmouk S, Ross-Ibarra J.

Genome Biol Evol. 2013;5(9):1594-609. doi: 10.1093/gbe/evt109.


From many, one: genetic control of prolificacy during maize domestication.

Wills DM, Whipple CJ, Takuno S, Kursel LE, Shannon LM, Ross-Ibarra J, Doebley JF.

PLoS Genet. 2013 Jun;9(6):e1003604. doi: 10.1371/journal.pgen.1003604. Epub 2013 Jun 27.


Agriculture: Feeding the future.

McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson RL, Pontarollo R, Richards CM, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton RS, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney RK, Ward J, Waugh R, Wenzl P, Zamir D.

Nature. 2013 Jul 4;499(7456):23-4. doi: 10.1038/499023a. No abstract available.


The genomic signature of crop-wild introgression in maize.

Hufford MB, Lubinksy P, Pyhäjärvi T, Devengenzo MT, Ellstrand NC, Ross-Ibarra J.

PLoS Genet. 2013 May;9(5):e1003477. doi: 10.1371/journal.pgen.1003477. Epub 2013 May 9.


Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays.

Kanizay LB, Pyhäjärvi T, Lowry EG, Hufford MB, Peterson DG, Ross-Ibarra J, Dawe RK.

Heredity (Edinb). 2013 Jun;110(6):570-7. doi: 10.1038/hdy.2013.2. Epub 2013 Feb 27.


Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.

Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, DeRisi JL, Smith T, Tobias C, Ross-Ibarra J, Korf I, Chan SW.

Genome Biol. 2013 Jan 30;14(1):R10. doi: 10.1186/gb-2013-14-1-r10.


Teosinte as a model system for population and ecological genomics.

Hufford MB, Bilinski P, Pyhäjärvi T, Ross-Ibarra J.

Trends Genet. 2012 Dec;28(12):606-15. doi: 10.1016/j.tig.2012.08.004. Epub 2012 Sep 27. Review.


Historical genomics of North American maize.

van Heerwaarden J, Hufford MB, Ross-Ibarra J.

Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12420-5. doi: 10.1073/pnas.1209275109. Epub 2012 Jul 16.


Reshaping of the maize transcriptome by domestication.

Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11878-83. doi: 10.1073/pnas.1201961109. Epub 2012 Jul 2.


Comparative population genomics of maize domestication and improvement.

Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, Swanson-Wagner RA, Tiffin P, Wang J, Zhang G, Doebley J, McMullen MD, Ware D, Buckler ES, Yang S, Ross-Ibarra J.

Nat Genet. 2012 Jun 3;44(7):808-11. doi: 10.1038/ng.2309.


Maize HapMap2 identifies extant variation from a genome in flux.

Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D.

Nat Genet. 2012 Jun 3;44(7):803-7. doi: 10.1038/ng.2313.


Megabase-scale inversion polymorphism in the wild ancestor of maize.

Fang Z, Pyhäjärvi T, Weber AL, Dawe RK, Glaubitz JC, González Jde J, Ross-Ibarra C, Doebley J, Morrell PL, Ross-Ibarra J.

Genetics. 2012 Jul;191(3):883-94. doi: 10.1534/genetics.112.138578. Epub 2012 Apr 27.


Crop genomics: advances and applications.

Morrell PL, Buckler ES, Ross-Ibarra J.

Nat Rev Genet. 2011 Dec 29;13(2):85-96. doi: 10.1038/nrg3097. Review.


Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels.

Cook JP, McMullen MD, Holland JB, Tian F, Bradbury P, Ross-Ibarra J, Buckler ES, Flint-Garcia SA.

Plant Physiol. 2012 Feb;158(2):824-34. doi: 10.1104/pp.111.185033. Epub 2011 Dec 1.


Identification of a functional transposon insertion in the maize domestication gene tb1.

Studer A, Zhao Q, Ross-Ibarra J, Doebley J.

Nat Genet. 2011 Sep 25;43(11):1160-3. doi: 10.1038/ng.942.


Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians.

Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J.

Genome Biol Evol. 2011;3:219-29. doi: 10.1093/gbe/evr008. Epub 2011 Feb 4.


Genetic signals of origin, spread, and introgression in a large sample of maize landraces.

van Heerwaarden J, Doebley J, Briggs WH, Glaubitz JC, Goodman MM, de Jesus Sanchez Gonzalez J, Ross-Ibarra J.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1088-92. doi: 10.1073/pnas.1013011108. Epub 2010 Dec 28.


Influence of cryptic population structure on observed mating patterns in the wild progenitor of maize (Zea mays ssp. parviglumis).

Hufford MB, Gepts P, Ross-Ibarra J.

Mol Ecol. 2011 Jan;20(1):46-55. doi: 10.1111/j.1365-294X.2010.04924.x. Epub 2010 Nov 11.


Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae).

Eckert AJ, van Heerwaarden J, Wegrzyn JL, Nelson CD, Ross-Ibarra J, González-Martínez SC, Neale DB.

Genetics. 2010 Jul;185(3):969-82. doi: 10.1534/genetics.110.115543. Epub 2010 May 3. Erratum in: Genetics. 2014 May;197(1):433.

Supplemental Content

Loading ...
Support Center