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Items: 32

1.

YES1 amplification is a mechanism of acquired resistance to EGFR inhibitors identified by transposon mutagenesis and clinical genomics.

Fan PD, Narzisi G, Jayaprakash AD, Venturini E, Robine N, Smibert P, Germer S, Yu HA, Jordan EJ, Paik PK, Janjigian YY, Chaft JE, Wang L, Jungbluth AA, Middha S, Spraggon L, Qiao H, Lovly CM, Kris MG, Riely GJ, Politi K, Varmus H, Ladanyi M.

Proc Natl Acad Sci U S A. 2018 Jun 6. pii: 201717782. doi: 10.1073/pnas.1717782115. [Epub ahead of print]

2.

Organoid profiling identifies common responders to chemotherapy in pancreatic cancer.

Tiriac H, Belleau P, Engle DD, Plenker D, Deschênes A, Somerville T, Froeling FEM, Burkhart RA, Denroche RE, Jang GH, Miyabayashi K, Young CM, Patel H, Ma M, LaComb JF, Palmaira RLD, Javed AA, Huynh JA, Johnson M, Arora K, Robine N, Shah M, Sanghvi R, Goetz AB, Lowder CY, Martello L, Driehuis E, Lecomte N, Askan G, Iacobuzio-Donahue CA, Clevers H, Wood LD, Hruban RH, Thompson ED, Aguirre AJ, Wolpin BM, Sasson A, Kim J, Wu M, Bucobo JC, Allen PJ, Sejpal DV, Nealon W, Sullivan JD, Winter JM, Gimotty PA, Grem JL, DiMaio DJ, Buscaglia JM, Grandgenett PM, Brody JR, Hollingsworth MA, O'Kane GM, Notta F, Kim EJ, Crawford JM, Devoe CE, Ocean A, Wolfgang CL, Yu KH, Li E, Vakoc CR, Hubert B, Fischer SE, Wilson JM, Moffitt RA, Knox JJ, Krasnitz A, Gallinger S, Tuveson DA.

Cancer Discov. 2018 May 31. pii: CD-18-0349. doi: 10.1158/2159-8290.CD-18-0349. [Epub ahead of print]

PMID:
29853643
3.

taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time.

Corvelo A, Clarke WE, Robine N, Zody MC.

Genome Res. 2018 May;28(5):751-758. doi: 10.1101/gr.225276.117. Epub 2018 Mar 27.

PMID:
29588360
4.

Identification of Three Rheumatoid Arthritis Disease Subtypes by Machine Learning Integration of Synovial Histologic Features and RNA Sequencing Data.

Orange DE, Agius P, DiCarlo EF, Robine N, Geiger H, Szymonifka J, McNamara M, Cummings R, Andersen KM, Mirza S, Figgie M, Ivashkiv LB, Pernis AB, Jiang CS, Frank MO, Darnell RB, Lingampali N, Robinson WH, Gravallese E; Accelerating Medicines Partnership in Rheumatoid Arthritis and Lupus Network, Bykerk VP, Goodman SM, Donlin LT.

Arthritis Rheumatol. 2018 May;70(5):690-701. doi: 10.1002/art.40428. Epub 2018 Apr 2.

PMID:
29468833
5.

Next-Generation Rapid Autopsies Enable Tumor Evolution Tracking and Generation of Preclinical Models.

Pisapia DJ, Salvatore S, Pauli C, Hissong E, Eng K, Prandi D, Sailer VW, Robinson BD, Park K, Cyrta J, Tagawa ST, Kossai M, Fontugne J, Kim R, Sigaras A, Rao R, Pancirer D, Faltas B, Bareja R, Molina AM, Nanus DM, Rajappa P, Souweidane MM, Greenfield J, Emde AK, Robine N, Elemento O, Sboner A, Demichelis F, Beltran H, Rubin MA, Mosquera JM.

JCO Precis Oncol. 2017;2017. doi: 10.1200/PO.16.00038. Epub 2017 Jun 14.

6.

ATRX is a regulator of therapy induced senescence in human cells.

Kovatcheva M, Liao W, Klein ME, Robine N, Geiger H, Crago AM, Dickson MA, Tap WD, Singer S, Koff A.

Nat Commun. 2017 Aug 30;8(1):386. doi: 10.1038/s41467-017-00540-5.

7.

Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma.

Wrzeszczynski KO, Frank MO, Koyama T, Rhrissorrakrai K, Robine N, Utro F, Emde AK, Chen BJ, Arora K, Shah M, Vacic V, Norel R, Bilal E, Bergmann EA, Moore Vogel JL, Bruce JN, Lassman AB, Canoll P, Grommes C, Harvey S, Parida L, Michelini VV, Zody MC, Jobanputra V, Royyuru AK, Darnell RB.

Neurol Genet. 2017 Jul 11;3(4):e164. doi: 10.1212/NXG.0000000000000164. eCollection 2017 Aug.

8.

Structural insights into mis-regulation of protein kinase A in human tumors.

Cheung J, Ginter C, Cassidy M, Franklin MC, Rudolph MJ, Robine N, Darnell RB, Hendrickson WA.

Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1374-9. doi: 10.1073/pnas.1424206112. Epub 2015 Jan 20.

9.

Prognostic value of miR-375 and miR-214-3p in early stage oral squamous cell carcinoma.

Yoon AJ, Wang S, Shen J, Robine N, Philipone E, Oster MW, Nam A, Santella RM.

Am J Transl Res. 2014 Oct 11;6(5):580-92. eCollection 2014.

10.

Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences.

Cox LM, Yamanishi S, Sohn J, Alekseyenko AV, Leung JM, Cho I, Kim SG, Li H, Gao Z, Mahana D, Zárate Rodriguez JG, Rogers AB, Robine N, Loke P, Blaser MJ.

Cell. 2014 Aug 14;158(4):705-721. doi: 10.1016/j.cell.2014.05.052.

11.

Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines.

Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC.

Genome Res. 2014 Jul;24(7):1236-50. doi: 10.1101/gr.161554.113.

12.

Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma.

Honeyman JN, Simon EP, Robine N, Chiaroni-Clarke R, Darcy DG, Lim II, Gleason CE, Murphy JM, Rosenberg BR, Teegan L, Takacs CN, Botero S, Belote R, Germer S, Emde AK, Vacic V, Bhanot U, LaQuaglia MP, Simon SM.

Science. 2014 Feb 28;343(6174):1010-4. doi: 10.1126/science.1249484.

13.

Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs.

Westholm JO, Ladewig E, Okamura K, Robine N, Lai EC.

RNA. 2012 Feb;18(2):177-92. doi: 10.1261/rna.030627.111. Epub 2011 Dec 21.

14.

A Drosophila genetic screen yields allelic series of core microRNA biogenesis factors and reveals post-developmental roles for microRNAs.

Smibert P, Bejarano F, Wang D, Garaulet DL, Yang JS, Martin R, Bortolamiol-Becet D, Robine N, Hiesinger PR, Lai EC.

RNA. 2011 Nov;17(11):1997-2010. doi: 10.1261/rna.2983511. Epub 2011 Sep 23.

15.

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.

16.

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.

Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC.

Genome Res. 2011 Feb;21(2):203-15. doi: 10.1101/gr.116657.110. Epub 2010 Dec 22.

17.

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans.

Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC.

Genome Res. 2011 Feb;21(2):286-300. doi: 10.1101/gr.113050.110. Epub 2010 Dec 22.

18.

R2D2 organizes small regulatory RNA pathways in Drosophila.

Okamura K, Robine N, Liu Y, Liu Q, Lai EC.

Mol Cell Biol. 2011 Feb;31(4):884-96. doi: 10.1128/MCB.01141-10. Epub 2010 Dec 6.

19.

Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo.

Rouget C, Papin C, Boureux A, Meunier AC, Franco B, Robine N, Lai EC, Pelisson A, Simonelig M.

Nature. 2010 Oct 28;467(7319):1128-32. doi: 10.1038/nature09465. Epub 2010 Oct 17.

20.

Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.

Yang JS, Maurin T, Robine N, Rasmussen KD, Jeffrey KL, Chandwani R, Papapetrou EP, Sadelain M, O'Carroll D, Lai EC.

Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15163-8. doi: 10.1073/pnas.1006432107. Epub 2010 Aug 10.

21.

A broadly conserved pathway generates 3'UTR-directed primary piRNAs.

Robine N, Lau NC, Balla S, Jin Z, Okamura K, Kuramochi-Miyagawa S, Blower MD, Lai EC.

Curr Biol. 2009 Dec 29;19(24):2066-76. doi: 10.1016/j.cub.2009.11.064.

22.

Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line.

Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC.

Genome Res. 2009 Oct;19(10):1776-85. doi: 10.1101/gr.094896.109. Epub 2009 Jun 18.

23.

Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.

Borde V, Robine N, Lin W, Bonfils S, Géli V, Nicolas A.

EMBO J. 2009 Jan 21;28(2):99-111. doi: 10.1038/emboj.2008.257. Epub 2008 Dec 11.

24.

Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

Schlecht U, Erb I, Demougin P, Robine N, Borde V, van Nimwegen E, Nicolas A, Primig M.

Mol Biol Cell. 2008 May;19(5):2193-207. doi: 10.1091/mbc.E07-12-1242. Epub 2008 Feb 27.

25.

Genome-wide redistribution of meiotic double-strand breaks in Saccharomyces cerevisiae.

Robine N, Uematsu N, Amiot F, Gidrol X, Barillot E, Nicolas A, Borde V.

Mol Cell Biol. 2007 Mar;27(5):1868-80. Epub 2006 Dec 22.

26.

VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.

La Rosa P, Viara E, Hupé P, Pierron G, Liva S, Neuvial P, Brito I, Lair S, Servant N, Robine N, Manié E, Brennetot C, Janoueix-Lerosey I, Raynal V, Gruel N, Rouveirol C, Stransky N, Stern MH, Delattre O, Aurias A, Radvanyi F, Barillot E.

Bioinformatics. 2006 Sep 1;22(17):2066-73. Epub 2006 Jul 4.

PMID:
16820431
27.

Urocytogram, an index of maturity in premature infants.

Robine N, Relier JP, Le Bars S.

Biol Neonate. 1988;54(2):93-9.

PMID:
3167137
28.

[Value of aspiration cytology for the evaluation of breast cancer recurrence].

Le Bars S, Robine N, Kerbrat P, Gedouin D.

Bull Assoc Anat (Nancy). 1985 Sep;69(206):215-20. French.

PMID:
3842268
29.

[Turner's syndrome and the urocytogram].

Le Bars S, Lecornu M, Robine N.

Bull Assoc Anat (Nancy). 1985 Sep;69(206):209-14. French.

PMID:
3842267
30.

[Use of the urocytogram in sexual ambiguities before puberty].

Le Bars S, Robine N, Le Guen A, Le Cornu M.

Bull Assoc Anat (Nancy). 1979 Dec;63(183):459-69. French.

PMID:
553676
31.

[Applications of the urocytogram in primary-secondary amenorrhea in adolescents].

Le Bars S, Robine N, Le Garrec C.

Bull Assoc Anat (Nancy). 1979 Sep;63(182):297-308. French.

PMID:
399862
32.

[Cellular material in urinary sediment in retarded or precocious puberty].

Le Bars S, Le Cornu M, Robine N.

C R Seances Soc Biol Fil. 1978;172(4):752-8. French.

PMID:
154955

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