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Items: 7


Genome sequence of M6, a diploid inbred clone of the high glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity.

Leisner CP, Hamilton JP, Crisovan E, Manrique-Carpintero NC, Marand AP, Newton L, Pham GM, Jiang J, Douches DS, Jansky SH, Buell CR.

Plant J. 2018 Feb 5. doi: 10.1111/tpj.13857. [Epub ahead of print]


De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin.

Zhao D, Hamilton JP, Pham GM, Crisovan E, Wiegert-Rininger K, Vaillancourt B, DellaPenna D, Buell CR.

Gigascience. 2017 Sep 1;6(9):1-7. doi: 10.1093/gigascience/gix065.


Extensive genome heterogeneity leads to preferential allele expression and copy number-dependent expression in cultivated potato.

Pham GM, Newton L, Wiegert-Rininger K, Vaillancourt B, Douches DS, Buell CR.

Plant J. 2017 Nov;92(4):624-637. doi: 10.1111/tpj.13706. Epub 2017 Oct 16.


EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments.

Wilkins O, Hafemeister C, Plessis A, Holloway-Phillips MM, Pham GM, Nicotra AB, Gregorio GB, Jagadish SV, Septiningsih EM, Bonneau R, Purugganan M.

Plant Cell. 2016 Oct;28(10):2365-2384. Epub 2016 Sep 21.


Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum.

Hardigan MA, Crisovan E, Hamilton JP, Kim J, Laimbeer P, Leisner CP, Manrique-Carpintero NC, Newton L, Pham GM, Vaillancourt B, Yang X, Zeng Z, Douches DS, Jiang J, Veilleux RE, Buell CR.

Plant Cell. 2016 Feb;28(2):388-405. doi: 10.1105/tpc.15.00538. Epub 2016 Jan 15.


Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop.

Hazzouri KM, Flowers JM, Visser HJ, Khierallah HS, Rosas U, Pham GM, Meyer RS, Johansen CK, Fresquez ZA, Masmoudi K, Haider N, El Kadri N, Idaghdour Y, Malek JA, Thirkhill D, Markhand GS, Krueger RR, Zaid A, Purugganan MD.

Nat Commun. 2015 Nov 9;6:8824. doi: 10.1038/ncomms9824.


Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga Chlamydomonas reinhardtii.

Flowers JM, Hazzouri KM, Pham GM, Rosas U, Bahmani T, Khraiwesh B, Nelson DR, Jijakli K, Abdrabu R, Harris EH, Lefebvre PA, Hom EF, Salehi-Ashtiani K, Purugganan MD.

Plant Cell. 2015 Sep;27(9):2353-69. doi: 10.1105/tpc.15.00492. Epub 2015 Sep 21.

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