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Items: 1 to 50 of 126

1.

Enhanced spectral density mapping through combined multiple-field deuterium 13CH2D methyl spin relaxation NMR spectroscopy.

Hsu A, O'Brien PA, Bhattacharya S, Rance M, Palmer AG 3rd.

Methods. 2017 Dec 27. pii: S1046-2023(17)30286-4. doi: 10.1016/j.ymeth.2017.12.020. [Epub ahead of print]

PMID:
29288801
2.

Redox-mediated quorum sensing in plants.

Fuller AW, Young P, Pierce BD, Kitson-Finuff J, Jain P, Schneider K, Lazar S, Taran O, Palmer AG, Lynn DG.

PLoS One. 2017 Sep 13;12(9):e0182655. doi: 10.1371/journal.pone.0182655. eCollection 2017.

3.

General expressions for R1ρ relaxation for N-site chemical exchange and the special case of linear chains.

Koss H, Rance M, Palmer AG 3rd.

J Magn Reson. 2017 Jan;274:36-45. doi: 10.1016/j.jmr.2016.10.015. Epub 2016 Oct 27.

4.

Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbiosis.

Palmer AG, Mukherjee A, Stacy DM, Lazar S, Ané JM, Blackwell HE.

Chembiochem. 2016 Nov 17;17(22):2199-2205. doi: 10.1002/cbic.201600373. Epub 2016 Oct 14.

PMID:
27739645
5.

Kin recognition is a nutrient-dependent inducible phenomenon.

Palmer AG, Ali M, Yang S, Parchami N, Bento T, Mazzella A, Oni M, Riley MC, Schneider K, Massa N.

Plant Signal Behav. 2016 Sep;11(9):e1224045.

6.

Thermostability of Enzymes from Molecular Dynamics Simulations.

Zeiske T, Stafford KA, Palmer AG 3rd.

J Chem Theory Comput. 2016 Jun 14;12(6):2489-92. doi: 10.1021/acs.jctc.6b00120. Epub 2016 May 6.

7.

A dynamic look backward and forward.

Palmer AG 3rd.

J Magn Reson. 2016 May;266:73-80. doi: 10.1016/j.jmr.2016.01.018. Epub 2016 Feb 11. Review.

8.

Dynamics of GCN4 facilitate DNA interaction: a model-free analysis of an intrinsically disordered region.

Gill ML, Byrd RA, Palmer AG III.

Phys Chem Chem Phys. 2016 Feb 17;18(8):5839-49. doi: 10.1039/c5cp06197k.

9.

Asparagine deamidation reduces DNA-binding affinity of the Drosophila melanogaster Scr homeodomain.

O'Connell NE, Lelli K, Mann RS, Palmer AG 3rd.

FEBS Lett. 2015 Oct 24;589(21):3237-41. doi: 10.1016/j.febslet.2015.09.020. Epub 2015 Oct 3.

10.

Small molecule-induced oxidation of protein disulfide isomerase is neuroprotective.

Kaplan A, Gaschler MM, Dunn DE, Colligan R, Brown LM, Palmer AG 3rd, Lo DC, Stockwell BR.

Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):E2245-52. doi: 10.1073/pnas.1500439112. Epub 2015 Apr 6.

11.

Correction to "Local isotropic diffusion approximation for coupled internal and overall molecular motions in NMR spin relaxation".

Gill ML, Palmer AG 3rd.

J Phys Chem B. 2015 Feb 19;119(7):3333. doi: 10.1021/acs.jpcb.5b00764. Epub 2015 Feb 6. No abstract available.

12.

Enzyme dynamics from NMR spectroscopy.

Palmer AG 3rd.

Acc Chem Res. 2015 Feb 17;48(2):457-65. doi: 10.1021/ar500340a. Epub 2015 Jan 9. Review.

13.

Conformational preferences underlying reduced activity of a thermophilic ribonuclease H.

Stafford KA, Trbovic N, Butterwick JA, Abel R, Friesner RA, Palmer AG 3rd.

J Mol Biol. 2015 Feb 27;427(4):853-66. doi: 10.1016/j.jmb.2014.11.023. Epub 2014 Dec 27.

14.

Rotation operator propagators for time-varying radiofrequency pulses in NMR spectroscopy: applications to shaped pulses and pulse trains.

Li Y, Rance M, Palmer AG 3rd.

J Magn Reson. 2014 Nov;248:105-14. doi: 10.1016/j.jmr.2014.09.001. Epub 2014 Sep 22.

15.

Conformational flexibility in the binding surface of the potassium channel blocker ShK.

Sher I, Chang SC, Li Y, Chhabra S, Palmer AG 3rd, Norton RS, Chill JH.

Chembiochem. 2014 Nov 3;15(16):2402-10. doi: 10.1002/cbic.201402295. Epub 2014 Sep 18.

16.

Local isotropic diffusion approximation for coupled internal and overall molecular motions in NMR spin relaxation.

Gill ML, Palmer AG 3rd.

J Phys Chem B. 2014 Sep 25;118(38):11120-8. doi: 10.1021/jp506580c. Epub 2014 Sep 11. Erratum in: J Phys Chem B. 2015 Feb 19;119(7):3333.

17.

Protein dynamics control the progression and efficiency of the catalytic reaction cycle of the Escherichia coli DNA-repair enzyme AlkB.

Ergel B, Gill ML, Brown L, Yu B, Palmer AG 3rd, Hunt JF.

J Biol Chem. 2014 Oct 24;289(43):29584-601. doi: 10.1074/jbc.M114.575647. Epub 2014 Jul 20.

18.

Plant responses to bacterial N-acyl L-homoserine lactones are dependent on enzymatic degradation to L-homoserine.

Palmer AG, Senechal AC, Mukherjee A, Ané JM, Blackwell HE.

ACS Chem Biol. 2014 Aug 15;9(8):1834-45. doi: 10.1021/cb500191a. Epub 2014 Jun 18.

19.

Chemical exchange in biomacromolecules: past, present, and future.

Palmer AG 3rd.

J Magn Reson. 2014 Apr;241:3-17. doi: 10.1016/j.jmr.2014.01.008. Review.

20.

Conformational Dynamics of the Partially Disordered Yeast Transcription Factor GCN4.

Robustelli P, Trbovic N, Friesner RA, Palmer AG 3rd.

J Chem Theory Comput. 2013 Nov 1;9(11). doi: 10.1021/ct400654r.

21.

Side chain dynamics of carboxyl and carbonyl groups in the catalytic function of Escherichia coli ribonuclease H.

Stafford KA, Ferrage F, Cho JH, Palmer AG 3rd.

J Am Chem Soc. 2013 Dec 4;135(48):18024-7. doi: 10.1021/ja409479y. Epub 2013 Nov 20.

22.

Thermal adaptation of conformational dynamics in ribonuclease H.

Stafford KA, Robustelli P, Palmer AG 3rd.

PLoS Comput Biol. 2013;9(10):e1003218. doi: 10.1371/journal.pcbi.1003218. Epub 2013 Oct 3.

23.

Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion.

Li Y, Altorelli NL, Bahna F, Honig B, Shapiro L, Palmer AG 3rd.

Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16462-7. doi: 10.1073/pnas.1314303110. Epub 2013 Sep 25. Erratum in: Proc Natl Acad Sci U S A. 2013 Nov 26;110(48):19651.

24.

Starting-structure dependence of nanosecond timescale intersubstate transitions and reproducibility of MD-derived order parameters.

Zeiske T, Stafford KA, Friesner RA, Palmer AG 3rd.

Proteins. 2013 Mar;81(3):499-509. doi: 10.1002/prot.24209. Epub 2012 Dec 24.

25.

Chemical methods to interrogate bacterial quorum sensing pathways.

Praneenararat T, Palmer AG, Blackwell HE.

Org Biomol Chem. 2012 Oct 3;10(41):8189-99. doi: 10.1039/c2ob26353j.

26.

Interpreting protein structural dynamics from NMR chemical shifts.

Robustelli P, Stafford KA, Palmer AG 3rd.

J Am Chem Soc. 2012 Apr 11;134(14):6365-74. doi: 10.1021/ja300265w. Epub 2012 Mar 28.

27.

Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts.

Palmer AG, Streng E, Blackwell HE.

ACS Chem Biol. 2011 Dec 16;6(12):1348-56. doi: 10.1021/cb200298g. Epub 2011 Oct 6.

28.

Multiplet-filtered and gradient-selected zero-quantum TROSY experiments for 13C1H3 methyl groups in proteins.

Gill ML, Palmer AG 3rd.

J Biomol NMR. 2011 Nov;51(3):245-51. doi: 10.1007/s10858-011-9533-1. Epub 2011 Sep 15.

29.

Tuning protein autoinhibition by domain destabilization.

Cho JH, Muralidharan V, Vila-Perello M, Raleigh DP, Muir TW, Palmer AG 3rd.

Nat Struct Mol Biol. 2011 May;18(5):550-5. doi: 10.1038/nsmb.2039. Epub 2011 May 1.

30.

Quorum sensing in bacterial species that use degenerate autoinducers can be tuned by using structurally identical non-native ligands.

Palmer AG, Streng E, Jewell KA, Blackwell HE.

Chembiochem. 2011 Jan 3;12(1):138-47. doi: 10.1002/cbic.201000551.

31.

Narrowing of protein NMR spectral lines broadened by chemical exchange.

Li Y, Palmer AG 3rd.

J Am Chem Soc. 2010 Jul 7;132(26):8856-7. doi: 10.1021/ja103251h.

32.

One-trial cocaine-induced behavioral sensitization in preweanling rats: role of contextual stimuli.

Herbert MS, Der-Ghazarian T, Palmer AG, McDougall SA.

Exp Clin Psychopharmacol. 2010 Jun;18(3):284-95. doi: 10.1037/a0019142.

33.

Phi-value analysis for ultrafast folding proteins by NMR relaxation dispersion.

Cho JH, O'Connell N, Raleigh DP, Palmer AG 3rd.

J Am Chem Soc. 2010 Jan 20;132(2):450-1. doi: 10.1021/ja909052h.

34.

TROSY-selected ZZ-exchange experiment for characterizing slow chemical exchange in large proteins.

Li Y, Palmer AG 3rd.

J Biomol NMR. 2009 Dec;45(4):357-60. doi: 10.1007/s10858-009-9385-0. Epub 2009 Nov 5.

35.

The molecular language of semagenesis.

Palmer AG, Liu Y, Adkins SM, Zhang X, Wu IL, Chen X, Lynn DG.

Plant Signal Behav. 2008 Aug;3(8):560-1.

36.

A topical issue: NMR investigations of molecular dynamics.

Palmer AG 3rd.

J Biomol NMR. 2009 Sep;45(1-2):1-4. doi: 10.1007/s10858-009-9345-8. No abstract available.

PMID:
19669621
37.

Partially folded equilibrium intermediate of the villin headpiece HP67 defined by 13C relaxation dispersion.

O'Connell NE, Grey MJ, Tang Y, Kosuri P, Miloushev VZ, Raleigh DP, Palmer AG 3rd.

J Biomol NMR. 2009 Sep;45(1-2):85-98. doi: 10.1007/s10858-009-9340-0. Epub 2009 Jul 31.

38.

Importance of environmental context for one- and three-trial cocaine-induced behavioral sensitization in preweanling rats.

McDougall SA, Cortez AM, Palmer AG, Herbert MS, Martinez CE, Charntikov S, Amodeo DA.

Psychopharmacology (Berl). 2009 Oct;206(3):377-88. doi: 10.1007/s00213-009-1616-2. Epub 2009 Jul 28.

39.

Parasitic angiosperms, semagenesis and general strategies for plant-plant signaling in the rhizosphere.

Palmer AG, Chen MC, Kinger NP, Lynn DG.

Pest Manag Sci. 2009 May;65(5):512-9. doi: 10.1002/ps.1717.

PMID:
19235134
40.

Solution structure of the NaV1.2 C-terminal EF-hand domain.

Miloushev VZ, Levine JA, Arbing MA, Hunt JF, Pitt GS, Palmer AG 3rd.

J Biol Chem. 2009 Mar 6;284(10):6446-54. doi: 10.1074/jbc.M807401200. Epub 2009 Jan 7.

41.

Protein side-chain dynamics and residual conformational entropy.

Trbovic N, Cho JH, Abel R, Friesner RA, Rance M, Palmer AG 3rd.

J Am Chem Soc. 2009 Jan 21;131(2):615-22. doi: 10.1021/ja806475k.

42.

Dynamic properties of a type II cadherin adhesive domain: implications for the mechanism of strand-swapping of classical cadherins.

Miloushev VZ, Bahna F, Ciatto C, Ahlsen G, Honig B, Shapiro L, Palmer AG 3rd.

Structure. 2008 Aug 6;16(8):1195-205. doi: 10.1016/j.str.2008.05.009.

43.

Deciphering a protolanguage for bacteria-host communication.

Palmer AG, Blackwell HE.

Nat Chem Biol. 2008 Aug;4(8):452-4. doi: 10.1038/nchembio0808-452.

PMID:
18641623
44.

Crystal structures of beta-neurexin 1 and beta-neurexin 2 ectodomains and dynamics of splice insertion sequence 4.

Koehnke J, Jin X, Trbovic N, Katsamba PS, Brasch J, Ahlsen G, Scheiffele P, Honig B, Palmer AG 3rd, Shapiro L.

Structure. 2008 Mar;16(3):410-21. doi: 10.1016/j.str.2007.12.024.

45.

Protein conformational flexibility prediction using machine learning.

Trott O, Siggers K, Rost B, Palmer AG 3rd.

J Magn Reson. 2008 May;192(1):37-47. doi: 10.1016/j.jmr.2008.01.011. Epub 2008 Feb 1.

46.

Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins.

Maragakis P, Lindorff-Larsen K, Eastwood MP, Dror RO, Klepeis JL, Arkin IT, Jensen MØ, Xu H, Trbovic N, Friesner RA, Palmer AG III, Shaw DE.

J Phys Chem B. 2008 May 15;112(19):6155-8. doi: 10.1021/jp077018h. Epub 2008 Mar 1.

47.

Structural analysis of protein dynamics by MD simulations and NMR spin-relaxation.

Trbovic N, Kim B, Friesner RA, Palmer AG 3rd.

Proteins. 2008 May 1;71(2):684-94.

48.

Characterization of chemical exchange using residual dipolar coupling.

Igumenova TI, Brath U, Akke M, Palmer AG 3rd.

J Am Chem Soc. 2007 Nov 7;129(44):13396-7. Epub 2007 Oct 12. No abstract available.

49.

Biophysics: proteins hunt and gather.

Eliezer D, Palmer AG 3rd.

Nature. 2007 Jun 21;447(7147):920-1. No abstract available.

PMID:
17581572
50.

Semagenesis and the parasitic angiosperm Striga asiatica.

Keyes WJ, Palmer AG, Erbil WK, Taylor JV, Apkarian RP, Weeks ER, Lynn DG.

Plant J. 2007 Aug;51(4):707-16. Epub 2007 Jun 15.

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