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Items: 1 to 50 of 58

1.

Comparison of taxon-specific versus general locus sets for targeted sequence capture in plant phylogenomics.

Chau JH, Rahfeldt WA, Olmstead RG.

Appl Plant Sci. 2018 Mar 31;6(3):e1032. doi: 10.1002/aps3.1032. eCollection 2018 Mar.

2.

Origins of North American arid-land Verbenaceae: More than one way to skin a cat.

Frost LA, Tyson SM, Lu-Irving P, O'Leary N, Olmstead RG.

Am J Bot. 2017 Nov 23. doi: 10.3732/ajb.1700292. [Epub ahead of print]

PMID:
29170247
3.

A large-scale chloroplast phylogeny of the Lamiaceae sheds new light on its subfamilial classification.

Li B, Cantino PD, Olmstead RG, Bramley GL, Xiang CL, Ma ZH, Tan YH, Zhang DX.

Sci Rep. 2016 Oct 17;6:34343. doi: 10.1038/srep34343.

4.

Phylogeny of Lamiidae.

Refulio-Rodriguez NF, Olmstead RG.

Am J Bot. 2014 Feb;101(2):287-99. doi: 10.3732/ajb.1300394. Epub 2014 Feb 8.

5.

A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree.

Särkinen T, Bohs L, Olmstead RG, Knapp S.

BMC Evol Biol. 2013 Sep 30;13:214. doi: 10.1186/1471-2148-13-214.

6.

Evolution of morphological traits in Verbenaceae.

O'Leary N, Calviño CI, Martínez S, Lu-Irving P, Olmstead RG, Múlgura ME.

Am J Bot. 2012 Nov;99(11):1778-92. doi: 10.3732/ajb.1200123. Epub 2012 Nov 1.

7.

FLOWERING BHLH transcriptional activators control expression of the photoperiodic flowering regulator CONSTANS in Arabidopsis.

Ito S, Song YH, Josephson-Day AR, Miller RJ, Breton G, Olmstead RG, Imaizumi T.

Proc Natl Acad Sci U S A. 2012 Feb 28;109(9):3582-7. doi: 10.1073/pnas.1118876109. Epub 2012 Feb 14.

8.

Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons.

Sanchez-Puerta MV, Abbona CC, Zhuo S, Tepe EJ, Bohs L, Olmstead RG, Palmer JD.

BMC Evol Biol. 2011 Sep 27;11:277. doi: 10.1186/1471-2148-11-277.

9.

A molecular phylogeny and classification of Verbenaceae.

Marx HE, O'Leary N, Yuan YW, Lu-Irving P, Tank DC, Múlgura ME, Olmstead RG.

Am J Bot. 2010 Oct;97(10):1647-63. doi: 10.3732/ajb.1000144. Epub 2010 Sep 27.

10.

Evolution of breeding systems and fruits in New World Galium and relatives (Rubiaceae).

Soza VL, Olmstead RG.

Am J Bot. 2010 Oct;97(10):1630-46. doi: 10.3732/ajb.1000130. Epub 2010 Sep 15.

11.

Angiosperm phylogeny: 17 genes, 640 taxa.

Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, Xi Z, Rushworth CA, Gitzendanner MA, Sytsma KJ, Qiu YL, Hilu KW, Davis CC, Sanderson MJ, Beaman RS, Olmstead RG, Judd WS, Donoghue MJ, Soltis PS.

Am J Bot. 2011 Apr;98(4):704-30. doi: 10.3732/ajb.1000404. Epub 2011 Apr 8.

12.

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV.

Science. 2011 May 20;332(6032):960-3. doi: 10.1126/science.1203810. Epub 2011 May 5.

13.

Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages.

Karol KG, Arumuganathan K, Boore JL, Duffy AM, Everett KD, Hall JD, Hansen SK, Kuehl JV, Mandoli DF, Mishler BD, Olmstead RG, Renzaglia KS, Wolf PG.

BMC Evol Biol. 2010 Oct 23;10:321. doi: 10.1186/1471-2148-10-321.

15.

An empirical demonstration of using pentatricopeptide repeat (PPR) genes as plant phylogenetic tools: phylogeny of Verbenaceae and the Verbena complex.

Yuan YW, Liu C, Marx HE, Olmstead RG.

Mol Phylogenet Evol. 2010 Jan;54(1):23-35. doi: 10.1016/j.ympev.2009.08.029. Epub 2009 Sep 3.

PMID:
19733248
16.

A molecular phylogeny and classification of Bignoniaceae.

Olmstead RG, Zjhra ML, Lohmann LG, Grose SO, Eckert AJ.

Am J Bot. 2009 Sep;96(9):1731-43. doi: 10.3732/ajb.0900004. Epub 2009 Aug 26.

17.

The pentatricopeptide repeat (PPR) gene family, a tremendous resource for plant phylogenetic studies.

Yuan YW, Liu C, Marx HE, Olmstead RG.

New Phytol. 2009;182(1):272-83. doi: 10.1111/j.1469-8137.2008.02739.x. Epub 2009 Jan 13.

19.

Mitochondrial DNA evolution in the Anaxyrus boreas species group.

Goebel AM, Ranker TA, Corn PS, Olmstead RG.

Mol Phylogenet Evol. 2009 Feb;50(2):209-25. doi: 10.1016/j.ympev.2008.06.019. Epub 2008 Jul 8.

PMID:
18662792
20.

A species-level phylogenetic study of the Verbena complex (Verbenaceae) indicates two independent intergeneric chloroplast transfers.

Yuan YW, Olmstead RG.

Mol Phylogenet Evol. 2008 Jul;48(1):23-33. doi: 10.1016/j.ympev.2008.04.004. Epub 2008 Apr 14.

PMID:
18495498
21.

From annuals to perennials: phylogeny of subtribe Castillejinae (Orobanchaceae).

Tank DC, Olmstead RG.

Am J Bot. 2008 May;95(5):608-25. doi: 10.3732/ajb.2007346.

22.

Application of phylogenetically defined names does not require that every specifier be present on a tree.

Cantino PD, Olmstead RG.

Syst Biol. 2008 Feb;57(1):157-60. doi: 10.1080/10635150701883873. No abstract available.

PMID:
18300028
23.

Tracking ancient polyploids: a retroposon insertion reveals an extinct diploid ancestor in the polyploid origin of belladonna.

Yuan YW, Zhang ZY, Chen ZD, Olmstead RG.

Mol Biol Evol. 2006 Dec;23(12):2263-7. Epub 2006 Aug 30.

PMID:
16943251
24.

Evolution of biogeographic disjunction between eastern Asia and eastern North America in Phryma (Phrymaceae).

Nie ZL, Sun H, Beardsley PM, Olmstead RG, Wen J.

Am J Bot. 2006 Sep;93(9):1343-56. doi: 10.3732/ajb.93.9.1343.

25.

Rapid speciation and the evolution of hummingbird pollination in neotropical Costus subgenus Costus (Costaceae): evidence from nrDNA ITS and ETS sequences.

Kay KM, Reeves PA, Olmstead RG, Schemske DW.

Am J Bot. 2005 Nov;92(11):1899-910. doi: 10.3732/ajb.92.11.1899.

26.

Duplication of floral regulatory genes in the Lamiales.

Aagaard JE, Olmstead RG, Willis JH, Phillips PC.

Am J Bot. 2005 Aug;92(8):1284-93. doi: 10.3732/ajb.92.8.1284.

27.

Down the slippery slope: plastid genome evolution in Convolvulaceae.

Stefanović S, Olmstead RG.

J Mol Evol. 2005 Sep;61(3):292-305. Epub 2005 Jul 4.

PMID:
15999247
28.

The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae).

Wolf PG, Karol KG, Mandoli DF, Kuehl J, Arumuganathan K, Ellis MW, Mishler BD, Kelch DG, Olmstead RG, Boore JL.

Gene. 2005 May 9;350(2):117-28. Epub 2005 Mar 19.

PMID:
15788152
29.

Molecular phylogenetics of the Macaronesian-endemic genus Bystropogon (Lamiaceae): palaeo-islands, ecological shifts and interisland colonizations.

Trusty JL, Olmstead RG, Santos-Guerra A, Sá-Fontinha S, Francisco-Ortega J.

Mol Ecol. 2005 Apr;14(4):1177-89.

PMID:
15773944
31.

A survey of tricolpate (eudicot) phylogenetic relationships.

Judd WS, Olmstead RG.

Am J Bot. 2004 Oct;91(10):1627-44. doi: 10.3732/ajb.91.10.1627.

32.

Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions.

Clarkson JJ, Knapp S, Garcia VF, Olmstead RG, Leitch AR, Chase MW.

Mol Phylogenet Evol. 2004 Oct;33(1):75-90.

PMID:
15324840
33.
34.

Phylogenetic relationships among Strobilanthes s.l. (Acanthaceae): evidence from ITS nrDNA, trnL-F cpDNA, and morphology.

Moylan EC, Bennett JR, Carine MA, Olmstead RG, Scotland RW.

Am J Bot. 2004 May;91(5):724-35. doi: 10.3732/ajb.91.5.724.

35.

Phylogeny of the festucoid grasses of subtribe Loliinae and allies (Poeae, Pooideae) inferred from ITS and trnL-F sequences.

Catalán P, Torrecilla P, López Rodríguez JA, Olmstead RG.

Mol Phylogenet Evol. 2004 May;31(2):517-41.

PMID:
15062792
36.

Patterns of evolution in western North American Mimulus (Phrymaceae).

Beardsley PM, Schoenig SE, Whittall JB, Olmstead RG.

Am J Bot. 2004 Mar;91(3):474-89. doi: 10.3732/ajb.91.3.474.

37.

Inference of higher-order relationships in the cycads from a large chloroplast data set.

Rai HS, O'Brien HE, Reeves PA, Olmstead RG, Graham SW.

Mol Phylogenet Evol. 2003 Nov;29(2):350-9.

PMID:
13678689
38.

AFLP phylogeny of Mimulus section Erythranthe and the evolution of hummingbird pollination.

Beardsley PM, Yen A, Olmstead RG.

Evolution. 2003 Jun;57(6):1397-410.

PMID:
12894947
40.

Phylogeny reconstruction: the role of morphology.

Scotland RW, Olmstead RG, Bennett JR.

Syst Biol. 2003 Aug;52(4):539-48. No abstract available.

PMID:
12857644
41.

Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms.

Cummings MP, Nugent JM, Olmstead RG, Palmer JD.

Curr Genet. 2003 May;43(2):131-8. Epub 2003 Mar 14.

PMID:
12695853
42.

Rooting phylogenetic trees with distant outgroups: a case study from the commelinoid monocots.

Graham SW, Olmstead RG, Barrett SC.

Mol Biol Evol. 2002 Oct;19(10):1769-81.

PMID:
12270903
43.

Monophyly of the Convolvulaceae and circumscription of their major lineages based on DNA sequences of multiple chloroplast loci.

Stefanovic S, Krueger L, Olmstead RG.

Am J Bot. 2002 Sep;89(9):1510-22. doi: 10.3732/ajb.89.9.1510.

44.

Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels.

Bremer B, Bremer K, Heidari N, Erixon P, Olmstead RG, Anderberg AA, Källersjö M, Barkhordarian E.

Mol Phylogenet Evol. 2002 Aug;24(2):274-301.

PMID:
12144762
45.

A simulation study of reduced tree-search effort in bootstrap resampling analysis.

DeBry RW, Olmstead RG.

Syst Biol. 2000 Mar;49(1):171-9. No abstract available.

PMID:
12116479
46.

Redefining Phrymaceae: the placement of Mimulus, tribe Mimuleae, and Phryma.

Beardsley PM, Olmstead RG.

Am J Bot. 2002 Jul;89(7):1093-102. doi: 10.3732/ajb.89.7.1093.

47.

Analyzing large data sets: rbcL 500 revisited.

Rice KA, Donoghue MJ, Olmstead RG.

Syst Biol. 1997 Sep;46(3):554-63. No abstract available.

PMID:
11975333
48.

Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus.

Millen RS, Olmstead RG, Adams KL, Palmer JD, Lao NT, Heggie L, Kavanagh TA, Hibberd JM, Gray JC, Morden CW, Calie PJ, Jermiin LS, Wolfe KH.

Plant Cell. 2001 Mar;13(3):645-58.

49.

Disintegration of the scrophulariaceae.

Olmstead RG, Depamphilis CW, Wolfe AD, Young ND, Elisons WJ, Reeves PA.

Am J Bot. 2001 Feb;88(2):348-61.

50.

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