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Items: 19


Discovering relationships between nuclear receptor signaling pathways, genes, and tissues in Transcriptomine.

Becnel LB, Ochsner SA, Darlington YF, McOwiti A, Kankanamge WH, Dehart M, Naumov A, McKenna NJ.

Sci Signal. 2017 Apr 25;10(476). pii: eaah6275. doi: 10.1126/scisignal.aah6275.


Research Resource: A Reference Transcriptome for Constitutive Androstane Receptor and Pregnane X Receptor Xenobiotic Signaling.

Ochsner SA, Tsimelzon A, Dong J, Coarfa C, McKenna NJ.

Mol Endocrinol. 2016 Aug;30(8):937-48. doi: 10.1210/me.2016-1095. Epub 2016 Jul 13.


Nuclear Receptor Signaling Atlas: Opening Access to the Biology of Nuclear Receptor Signaling Pathways.

Becnel LB, Darlington YF, Ochsner SA, Easton-Marks JR, Watkins CM, McOwiti A, Kankanamge WH, Wise MW, DeHart M, Margolis RN, McKenna NJ.

PLoS One. 2015 Sep 1;10(9):e0135615. doi: 10.1371/journal.pone.0135615. eCollection 2015.


Androgen receptor agonism promotes an osteogenic gene program in preadipocytes.

Hartig SM, Feng Q, Ochsner SA, Xiao R, McKenna NJ, McGuire SE, He B.

Biochem Biophys Res Commun. 2013 May 3;434(2):357-62. doi: 10.1016/j.bbrc.2013.03.078. Epub 2013 Apr 6.


Feed-forward inhibition of androgen receptor activity by glucocorticoid action in human adipocytes.

Hartig SM, He B, Newberg JY, Ochsner SA, Loose DS, Lanz RB, McKenna NJ, Buehrer BM, McGuire SE, Marcelli M, Mancini MA.

Chem Biol. 2012 Sep 21;19(9):1126-41. doi: 10.1016/j.chembiol.2012.07.020.


Activation of NF-κB protein prevents the transition from juvenile ovary to testis and promotes ovarian development in zebrafish.

Pradhan A, Khalaf H, Ochsner SA, Sreenivasan R, Koskinen J, Karlsson M, Karlsson J, McKenna NJ, Orbán L, Olsson PE.

J Biol Chem. 2012 Nov 2;287(45):37926-38. doi: 10.1074/jbc.M112.386284. Epub 2012 Sep 17.


Transcriptomine, a web resource for nuclear receptor signaling transcriptomes.

Ochsner SA, Watkins CM, McOwiti A, Xu X, Darlington YF, Dehart MD, Cooney AJ, Steffen DL, Becnel LB, McKenna NJ.

Physiol Genomics. 2012 Sep 1;44(17):853-63. doi: 10.1152/physiolgenomics.00033.2012. Epub 2012 Jul 10.


Combined deletion of Fxr and Shp in mice induces Cyp17a1 and results in juvenile onset cholestasis.

Anakk S, Watanabe M, Ochsner SA, McKenna NJ, Finegold MJ, Moore DD.

J Clin Invest. 2011 Jan;121(1):86-95. doi: 10.1172/JCI42846. Epub 2010 Dec 1.


Research resource: Tissue-specific transcriptomics and cistromics of nuclear receptor signaling: a web research resource.

Ochsner SA, Watkins CM, LaGrone BS, Steffen DL, McKenna NJ.

Mol Endocrinol. 2010 Oct;24(10):2065-9. doi: 10.1210/me.2010-0216. Epub 2010 Aug 4.


Re-expression of GATA2 cooperates with peroxisome proliferator-activated receptor-gamma depletion to revert the adipocyte phenotype.

Schupp M, Cristancho AG, Lefterova MI, Hanniman EA, Briggs ER, Steger DJ, Qatanani M, Curtin JC, Schug J, Ochsner SA, McKenna NJ, Lazar MA.

J Biol Chem. 2009 Apr 3;284(14):9458-64. doi: 10.1074/jbc.M809498200. Epub 2009 Jan 9.


GEMS (Gene Expression MetaSignatures), a Web resource for querying meta-analysis of expression microarray datasets: 17beta-estradiol in MCF-7 cells.

Ochsner SA, Steffen DL, Hilsenbeck SG, Chen ES, Watkins C, McKenna NJ.

Cancer Res. 2009 Jan 1;69(1):23-6. doi: 10.1158/0008-5472.CAN-08-3492.


Much room for improvement in deposition rates of expression microarray datasets.

Ochsner SA, Steffen DL, Stoeckert CJ Jr, McKenna NJ.

Nat Methods. 2008 Dec;5(12):991. doi: 10.1038/nmeth1208-991. No abstract available. Erratum in: Nat Methods. 2009 Jan;6(1):109.


Molecular properties of side population-sorted cells from mouse small intestine.

Gulati AS, Ochsner SA, Henning SJ.

Am J Physiol Gastrointest Liver Physiol. 2008 Jan;294(1):G286-94. Epub 2007 Nov 15.


Transcriptional profiling of bipotential embryonic liver cells to identify liver progenitor cell surface markers.

Ochsner SA, Strick-Marchand H, Qiu Q, Venable S, Dean A, Wilde M, Weiss MC, Darlington GJ.

Stem Cells. 2007 Oct;25(10):2476-87. Epub 2007 Jul 19.


Gene expression profiles of cumulus cell oocyte complexes during ovulation reveal cumulus cells express neuronal and immune-related genes: does this expand their role in the ovulation process?

Hernandez-Gonzalez I, Gonzalez-Robayna I, Shimada M, Wayne CM, Ochsner SA, White L, Richards JS.

Mol Endocrinol. 2006 Jun;20(6):1300-21. Epub 2006 Feb 2.


Disrupted function of tumor necrosis factor-alpha-stimulated gene 6 blocks cumulus cell-oocyte complex expansion.

Ochsner SA, Day AJ, Rugg MS, Breyer RM, Gomer RH, Richards JS.

Endocrinology. 2003 Oct;144(10):4376-84. Epub 2003 Jul 17.


Processing and localization of ADAMTS-1 and proteolytic cleavage of versican during cumulus matrix expansion and ovulation.

Russell DL, Doyle KM, Ochsner SA, Sandy JD, Richards JS.

J Biol Chem. 2003 Oct 24;278(43):42330-9. Epub 2003 Aug 7.


Hormone-regulated expression and localization of versican in the rodent ovary.

Russell DL, Ochsner SA, Hsieh M, Mulders S, Richards JS.

Endocrinology. 2003 Mar;144(3):1020-31.


Decreased expression of tumor necrosis factor-alpha-stimulated gene 6 in cumulus cells of the cyclooxygenase-2 and EP2 null mice.

Ochsner SA, Russell DL, Day AJ, Breyer RM, Richards JS.

Endocrinology. 2003 Mar;144(3):1008-19.


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