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Items: 20

1.

Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation.

Xie W, Luo H, Murugapiran SK, Dodsworth JA, Chen S, Sun Y, Hedlund BP, Wang P, Fang H, Deng M, Zhang CL.

Environ Microbiol. 2018 Feb;20(2):734-754. doi: 10.1111/1462-2920.14004. Epub 2017 Dec 29.

PMID:
29235710
2.

Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs.

Becraft ED, Dodsworth JA, Murugapiran SK, Thomas SC, Ohlsson JI, Stepanauskas R, Hedlund BP, Swingley WD.

Front Microbiol. 2017 Oct 31;8:2082. doi: 10.3389/fmicb.2017.02082. eCollection 2017.

3.

High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada.

Ganji R, Murugapiran SK, Ong JC, Manoharan N, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Dodsworth JA, Hedlund BP.

Genome Announc. 2016 Oct 20;4(5). pii: e01112-16. doi: 10.1128/genomeA.01112-16.

4.

High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China.

Mefferd CC, Zhou EM, Yu TT, Ming H, Murugapiran SK, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Williams AJ, Woyke T, Li WJ, Hedlund BP.

Genome Announc. 2016 Apr 28;4(2). pii: e00312-16. doi: 10.1128/genomeA.00312-16.

5.

High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.

Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP.

Stand Genomic Sci. 2016 Feb 27;11:20. doi: 10.1186/s40793-016-0140-3. eCollection 2016.

6.

Single-Cell-Genomics-Facilitated Read Binning of Candidate Phylum EM19 Genomes from Geothermal Spring Metagenomes.

Becraft ED, Dodsworth JA, Murugapiran SK, Ohlsson JI, Briggs BR, Kanbar J, De Vlaminck I, Quake SR, Dong H, Hedlund BP, Swingley WD.

Appl Environ Microbiol. 2015 Dec 4;82(4):992-1003. doi: 10.1128/AEM.03140-15. Print 2016 Feb 15.

7.

High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism.

Hedlund BP, Murugapiran SK, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Williams AJ, Cole JK, Dodsworth JA, Woyke T.

Genome Announc. 2015 Dec 3;3(6). pii: e01410-15. doi: 10.1128/genomeA.01410-15.

8.

Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes.

Saw JH, Spang A, Zaremba-Niedzwiedzka K, Juzokaite L, Dodsworth JA, Murugapiran SK, Colman DR, Takacs-Vesbach C, Hedlund BP, Guy L, Ettema TJ.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140328. doi: 10.1098/rstb.2014.0328.

9.

Uncultivated thermophiles: current status and spotlight on 'Aigarchaeota'.

Hedlund BP, Murugapiran SK, Alba TW, Levy A, Dodsworth JA, Goertz GB, Ivanova N, Woyke T.

Curr Opin Microbiol. 2015 Jun;25:136-45. doi: 10.1016/j.mib.2015.06.008. Epub 2015 Jun 23. Review.

PMID:
26113243
10.

Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.

Nobu MK, Dodsworth JA, Murugapiran SK, Rinke C, Gies EA, Webster G, Schwientek P, Kille P, Parkes RJ, Sass H, Jørgensen BB, Weightman AJ, Liu WT, Hallam SJ, Tsiamis G, Woyke T, Hedlund BP.

ISME J. 2016 Feb;10(2):273-86. doi: 10.1038/ismej.2015.97. Epub 2015 Jun 19.

11.

Impact of single-cell genomics and metagenomics on the emerging view of extremophile "microbial dark matter".

Hedlund BP, Dodsworth JA, Murugapiran SK, Rinke C, Woyke T.

Extremophiles. 2014 Sep;18(5):865-75. doi: 10.1007/s00792-014-0664-7. Epub 2014 Aug 12. Review.

PMID:
25113821
12.

Thermoflexus hugenholtzii gen. nov., sp. nov., a thermophilic, microaerophilic, filamentous bacterium representing a novel class in the Chloroflexi, Thermoflexia classis nov., and description of Thermoflexaceae fam. nov. and Thermoflexales ord. nov.

Dodsworth JA, Gevorkian J, Despujos F, Cole JK, Murugapiran SK, Ming H, Li WJ, Zhang G, Dohnalkova A, Hedlund BP.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2119-27. doi: 10.1099/ijs.0.055855-0. Epub 2014 Mar 27. Erratum in: Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3331.

PMID:
24676733
13.

LTQ-XL mass spectrometry proteome analysis expands the Pseudomonas aeruginosa AmpR regulon to include cyclic di-GMP phosphodiesterases and phosphoproteins, and identifies novel open reading frames.

Kumari H, Murugapiran SK, Balasubramanian D, Schneper L, Merighi M, Sarracino D, Lory S, Mathee K.

J Proteomics. 2014 Jan 16;96:328-342. doi: 10.1016/j.jprot.2013.11.018. Epub 2013 Nov 28.

14.

Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling.

Murugapiran SK, Huntemann M, Wei CL, Han J, Detter JC, Han C, Erkkila TH, Teshima H, Chen A, Kyrpides N, Mavrommatis K, Markowitz V, Szeto E, Ivanova N, Pagani I, Pati A, Goodwin L, Peters L, Pitluck S, Lam J, McDonald AI, Dodsworth JA, Woyke T, Hedlund BP.

Stand Genomic Sci. 2013 Feb 25;7(3):449-68. doi: 10.4056/sigs.3667269. eCollection 2013.

15.

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage.

Dodsworth JA, Blainey PC, Murugapiran SK, Swingley WD, Ross CA, Tringe SG, Chain PS, Scholz MB, Lo CC, Raymond J, Quake SR, Hedlund BP.

Nat Commun. 2013;4:1854. doi: 10.1038/ncomms2884.

16.

Lateral gene transfer of family A DNA polymerases between thermophilic viruses, aquificae, and apicomplexa.

Schoenfeld TW, Murugapiran SK, Dodsworth JA, Floyd S, Lodes M, Mead DA, Hedlund BP.

Mol Biol Evol. 2013 Jul;30(7):1653-64. doi: 10.1093/molbev/mst078. Epub 2013 Apr 22.

17.

Pyrosequencing reveals high-temperature cellulolytic microbial consortia in Great Boiling Spring after in situ lignocellulose enrichment.

Peacock JP, Cole JK, Murugapiran SK, Dodsworth JA, Fisher JC, Moser DP, Hedlund BP.

PLoS One. 2013;8(3):e59927. doi: 10.1371/journal.pone.0059927. Epub 2013 Mar 29.

18.

Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.

Murugapiran SK, Huntemann M, Wei CL, Han J, Detter JC, Han CS, Erkkila TH, Teshima H, Chen A, Kyrpides N, Mavrommatis K, Markowitz V, Szeto E, Ivanova N, Pagani I, Lam J, McDonald AI, Dodsworth JA, Pati A, Goodwin L, Peters L, Pitluck S, Woyke T, Hedlund BP.

Genome Announc. 2013 Jan;1(1). pii: e00106-12. doi: 10.1128/genomeA.00106-12. Epub 2013 Jan 24.

19.

Substituted lactam and cyclic azahemiacetals modulate Pseudomonas aeruginosa quorum sensing.

Malladi VL, Sobczak AJ, Maricic N, Murugapiran SK, Schneper L, Makemson J, Mathee K, Wnuk SF.

Bioorg Med Chem. 2011 Sep 15;19(18):5500-6. doi: 10.1016/j.bmc.2011.07.044. Epub 2011 Jul 28.

20.

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