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Items: 38

1.

Functional Outcomes for Nonoperatively Treated Proximal Fifth Metatarsal Fractures.

Dineen HA, Murphy TD, Mangat S, Lukosius EZ, Lin FC, Pettett BJ, Peoples SJ, Hurwitz SR.

Orthopedics. 2017 Nov 1;40(6):e1030-e1035. doi: 10.3928/01477447-20171012-02. Epub 2017 Oct 23.

PMID:
29058755
2.

Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies.

Geib SM, Liang GH, Murphy TD, Sim SB.

G3 (Bethesda). 2017 Aug 7;7(8):2407-2411. doi: 10.1534/g3.117.040741.

3.

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.

Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, Fulton RS, Kremitzki M, Magrini V, Markovic C, McGrath S, Steinberg KM, Auger K, Chow W, Collins J, Harden G, Hubbard T, Pelan S, Simpson JT, Threadgold G, Torrance J, Wood JM, Clarke L, Koren S, Boitano M, Peluso P, Li H, Chin CS, Phillippy AM, Durbin R, Wilson RK, Flicek P, Eichler EE, Church DM.

Genome Res. 2017 May;27(5):849-864. doi: 10.1101/gr.213611.116. Epub 2017 Apr 10.

4.

Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.

Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, Friedrich M, Gasperi G, Geib S, Georgakilas G, Gibbs RA, Giers SD, Gomulski LM, González-Guzmán M, Guillem-Amat A, Han Y, Hatzigeorgiou AG, Hernández-Crespo P, Hughes DS, Jones JW, Karagkouni D, Koskinioti P, Lee SL, Malacrida AR, Manni M, Mathiopoulos K, Meccariello A, Munoz-Torres M, Murali SC, Murphy TD, Muzny DM, Oberhofer G, Ortego F, Paraskevopoulou MD, Poelchau M, Qu J, Reczko M, Robertson HM, Rosendale AJ, Rosselot AE, Saccone G, Salvemini M, Savini G, Schreiner P, Scolari F, Siciliano P, Sim SB, Tsiamis G, Ureña E, S Vlachos I, Werren JH, Wimmer EA, Worley KC, Zacharopoulou A, Richards S, Handler AM.

Genome Biol. 2017 Jan 18;18(1):11. doi: 10.1186/s13059-017-1155-9. No abstract available.

5.

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.

Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, Friedrich M, Gasperi G, Geib S, Georgakilas G, Gibbs RA, Giers SD, Gomulski LM, González-Guzmán M, Guillem-Amat A, Han Y, Hatzigeorgiou AG, Hernández-Crespo P, Hughes DS, Jones JW, Karagkouni D, Koskinioti P, Lee SL, Malacrida AR, Manni M, Mathiopoulos K, Meccariello A, Munoz-Torres M, Murali SC, Murphy TD, Muzny DM, Oberhofer G, Ortego F, Paraskevopoulou MD, Poelchau M, Qu J, Reczko M, Robertson HM, Rosendale AJ, Rosselot AE, Saccone G, Salvemini M, Savini G, Schreiner P, Scolari F, Siciliano P, Sim SB, Tsiamis G, Ureña E, Vlachos IS, Werren JH, Wimmer EA, Worley KC, Zacharopoulou A, Richards S, Handler AM.

Genome Biol. 2016 Sep 22;17(1):192. doi: 10.1186/s13059-016-1049-2. Erratum in: Genome Biol. 2017 Jan 18;18(1):11.

6.

Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution.

Hoy MA, Waterhouse RM, Wu K, Estep AS, Ioannidis P, Palmer WJ, Pomerantz AF, Simão FA, Thomas J, Jiggins FM, Murphy TD, Pritham EJ, Robertson HM, Zdobnov EM, Gibbs RA, Richards S.

Genome Biol Evol. 2016 Jun 27;8(6):1762-75. doi: 10.1093/gbe/evw048.

7.

Assembly: a resource for assembled genomes at NCBI.

Kitts PA, Church DM, Thibaud-Nissen F, Choi J, Hem V, Sapojnikov V, Smith RG, Tatusova T, Xiang C, Zherikov A, DiCuccio M, Murphy TD, Pruitt KD, Kimchi A.

Nucleic Acids Res. 2016 Jan 4;44(D1):D73-80. doi: 10.1093/nar/gkv1226. Epub 2015 Nov 17.

8.

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.

O'Leary NA, Wright MW, Brister JR, Ciufo S, Haddad D, McVeigh R, Rajput B, Robbertse B, Smith-White B, Ako-Adjei D, Astashyn A, Badretdin A, Bao Y, Blinkova O, Brover V, Chetvernin V, Choi J, Cox E, Ermolaeva O, Farrell CM, Goldfarb T, Gupta T, Haft D, Hatcher E, Hlavina W, Joardar VS, Kodali VK, Li W, Maglott D, Masterson P, McGarvey KM, Murphy MR, O'Neill K, Pujar S, Rangwala SH, Rausch D, Riddick LD, Schoch C, Shkeda A, Storz SS, Sun H, Thibaud-Nissen F, Tolstoy I, Tully RE, Vatsan AR, Wallin C, Webb D, Wu W, Landrum MJ, Kimchi A, Tatusova T, DiCuccio M, Kitts P, Murphy TD, Pruitt KD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. doi: 10.1093/nar/gkv1189. Epub 2015 Nov 8.

9.

Mouse genome annotation by the RefSeq project.

McGarvey KM, Goldfarb T, Cox E, Farrell CM, Gupta T, Joardar VS, Kodali VK, Murphy MR, O'Leary NA, Pujar S, Rajput B, Rangwala SH, Riddick LD, Webb D, Wright MW, Murphy TD, Pruitt KD.

Mamm Genome. 2015 Oct;26(9-10):379-90. doi: 10.1007/s00335-015-9585-8. Epub 2015 Jul 28.

10.

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates.

Rajput B, Murphy TD, Pruitt KD.

Nucleic Acids Res. 2015 Sep 3;43(15):7270-9. doi: 10.1093/nar/gkv713. Epub 2015 Jul 13.

11.

Association of short-term exposure to ground-level ozone and respiratory outpatient clinic visits in a rural location - Sublette County, Wyoming, 2008-2011.

Pride KR, Peel JL, Robinson BF, Busacker A, Grandpre J, Bisgard KM, Yip FY, Murphy TD.

Environ Res. 2015 Feb;137:1-7. doi: 10.1016/j.envres.2014.10.033. Epub 2014 Dec 4.

PMID:
25483412
12.

Gene: a gene-centered information resource at NCBI.

Brown GR, Hem V, Katz KS, Ovetsky M, Wallin C, Ermolaeva O, Tolstoy I, Tatusova T, Pruitt KD, Maglott DR, Murphy TD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D36-42. doi: 10.1093/nar/gku1055. Epub 2014 Oct 29.

13.

Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment.

Scott JG, Warren WC, Beukeboom LW, Bopp D, Clark AG, Giers SD, Hediger M, Jones AK, Kasai S, Leichter CA, Li M, Meisel RP, Minx P, Murphy TD, Nelson DR, Reid WR, Rinkevich FD, Robertson HM, Sackton TB, Sattelle DB, Thibaud-Nissen F, Tomlinson C, van de Zande L, Walden KK, Wilson RK, Liu N.

Genome Biol. 2014;15(10):466.

14.

Finding the missing honey bee genes: lessons learned from a genome upgrade.

Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R; HGSC production teams, Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RF, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Vaerenbergh MV, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA; Honey Bee Genome Sequencing Consortium.

BMC Genomics. 2014 Jan 30;15:86. doi: 10.1186/1471-2164-15-86.

15.

RefSeq: an update on mammalian reference sequences.

Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J, Landrum MJ, McGarvey KM, Murphy MR, O'Leary NA, Pujar S, Rajput B, Rangwala SH, Riddick LD, Shkeda A, Sun H, Tamez P, Tully RE, Wallin C, Webb D, Weber J, Wu W, DiCuccio M, Kitts P, Maglott DR, Murphy TD, Ostell JM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63. doi: 10.1093/nar/gkt1114. Epub 2013 Nov 19.

16.

Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

Fong JH, Murphy TD, Pruitt KD.

BMC Genomics. 2013 Sep 25;14:654. doi: 10.1186/1471-2164-14-654.

17.

The carnegie protein trap library: a versatile tool for Drosophila developmental studies.

Buszczak M, Paterno S, Lighthouse D, Bachman J, Planck J, Owen S, Skora AD, Nystul TG, Ohlstein B, Allen A, Wilhelm JE, Murphy TD, Levis RW, Matunis E, Srivali N, Hoskins RA, Spradling AC.

Genetics. 2007 Mar;175(3):1505-31. Epub 2006 Dec 28.

18.

West Nile virus infection among health-fair participants, Wyoming 2003: assessment of symptoms and risk factors.

Murphy TD, Grandpre J, Novick SL, Seys SA, Harris RW, Musgrave K.

Vector Borne Zoonotic Dis. 2005 Fall;5(3):246-51.

PMID:
16187893
19.

Treatment with tobramycin solution for inhalation reduces hospitalizations in young CF subjects with mild lung disease.

Murphy TD, Anbar RD, Lester LA, Nasr SZ, Nickerson B, VanDevanter DR, Colin AA.

Pediatr Pulmonol. 2004 Oct;38(4):314-20.

PMID:
15334509
21.

The application of response surface methodology to sterilization process development and validation of a water cascade autoclave.

Murphy TD, Hokes J, Green TC, Cundell AM.

PDA J Pharm Sci Technol. 1999 Mar-Apr;53(2):83-94.

PMID:
10754695
22.

Use of Molecular Diagnostic Methods for Lymphoma Staging in Bilateral Bone Marrow Biopsies.

Murphy TD, Crisan D, Farkas DH.

Mol Diagn. 1997 Sep;2(3):177-182.

PMID:
10462607
23.

Centromeres take flight: alpha satellite and the quest for the human centromere.

Murphy TD, Karpen GH.

Cell. 1998 May 1;93(3):317-20. Review. No abstract available.

24.

Neocentromere activity of structurally acentric mini-chromosomes in Drosophila.

Williams BC, Murphy TD, Goldberg ML, Karpen GH.

Nat Genet. 1998 Jan;18(1):30-7.

PMID:
9425896
26.

Localization of centromere function in a Drosophila minichromosome.

Murphy TD, Karpen GH.

Cell. 1995 Aug 25;82(4):599-609.

27.

Validity of self-assessment of sexual maturation in adolescent male patients with cystic fibrosis.

Boas SR, Falsetti D, Murphy TD, Orenstein DM.

J Adolesc Health. 1995 Jul;17(1):42-5.

PMID:
7578162
29.

Diaphragmatic failure during group B streptococcal sepsis in piglets: the role of thromboxane A2.

Murphy TD, Gibson RL, Standaert TA, Woodrum DE.

J Appl Physiol (1985). 1995 Feb;78(2):491-8.

PMID:
7759417
30.

Effect of group B streptococcal sepsis on diaphragmatic function in young piglets.

Murphy TD, Gibson RL, Standaert TA, Mayock DE, Woodrum DE.

Pediatr Res. 1993 Jan;33(1):10-4.

PMID:
8433854
31.

Group B streptococcus has no effect on piglet diaphragmatic force generation.

Murphy TD, Mayock DE, Standaert TA, Gibson RL, Woodrum DE.

Am Rev Respir Dis. 1992 Feb;145(2 Pt 1):471-5.

PMID:
1736760
32.

Diaphragmatic force and substrate response to resistive loaded breathing in the piglet.

Mayock DE, Standaert TA, Murphy TD, Woodrum DE.

J Appl Physiol (1985). 1991 Jan;70(1):70-6.

PMID:
2010411
33.

Temporal changes in the distribution of attention in the visual field in response to precues.

Murphy TD, Eriksen CW.

Percept Psychophys. 1987 Dec;42(6):576-86. No abstract available.

PMID:
3696952
34.

Movement of attentional focus across the visual field: a critical look at the evidence.

Eriksen CW, Murphy TD.

Percept Psychophys. 1987 Sep;42(3):299-305. No abstract available.

PMID:
3671056
35.

Linear separability and concept learning: context, relational properties, and concept naturalness.

Wattenmaker WD, Dewey GI, Murphy TD, Medin DL.

Cogn Psychol. 1986 Apr;18(2):158-94. No abstract available.

PMID:
3709107
36.

Given versus induced category representations: use of prototype and exemplar information in classification.

Medin DL, Altom MW, Murphy TD.

J Exp Psychol Learn Mem Cogn. 1984 Jul;10(3):333-52.

PMID:
6235306
37.

Medical knowledge and statistical methods in early nineteenth-century France.

Murphy TD.

Med Hist. 1981 Jul;25(3):301-19. No abstract available.

38.

The French medical profession's perception of its social function between 1776 and 1830.

Murphy TD.

Med Hist. 1979 Jul;23(3):259-78. No abstract available.

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