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Items: 18

1.

Correction for Morton et al., "Uncovering the Horseshoe Effect in Microbial Analyses".

Morton JT, Toran L, Edlund A, Metcalf JL, Lauber C, Knight R.

mSystems. 2018 Feb 6;3(1). pii: e00006-18. doi: 10.1128/mSystems.00006-18. eCollection 2018 Jan-Feb.

2.

Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes.

Jiang L, Amir A, Morton JT, Heller R, Arias-Castro E, Knight R.

mSystems. 2017 Nov 21;2(6). pii: e00092-17. doi: 10.1128/mSystems.00092-17. eCollection 2017 Nov-Dec.

3.

Evaluating the impact of domestication and captivity on the horse gut microbiome.

Metcalf JL, Song SJ, Morton JT, Weiss S, Seguin-Orlando A, Joly F, Feh C, Taberlet P, Coissac E, Amir A, Willerslev E, Knight R, McKenzie V, Orlando L.

Sci Rep. 2017 Nov 14;7(1):15497. doi: 10.1038/s41598-017-15375-9.

4.

A communal catalogue reveals Earth's multiscale microbial diversity.

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium.

Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1.

PMID:
29088705
5.

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome.

Maier TV, Lucio M, Lee LH, VerBerkmoes NC, Brislawn CJ, Bernhardt J, Lamendella R, McDermott JE, Bergeron N, Heinzmann SS, Morton JT, González A, Ackermann G, Knight R, Riedel K, Krauss RM, Schmitt-Kopplin P, Jansson JK.

MBio. 2017 Oct 17;8(5). pii: e01343-17. doi: 10.1128/mBio.01343-17.

6.

Impacts of the Human Gut Microbiome on Therapeutics.

Vázquez-Baeza Y, Callewaert C, Debelius J, Hyde E, Marotz C, Morton JT, Swafford A, Vrbanac A, Dorrestein PC, Knight R.

Annu Rev Pharmacol Toxicol. 2018 Jan 6;58:253-270. doi: 10.1146/annurev-pharmtox-042017-031849. Epub 2017 Oct 2.

PMID:
28968189
7.

Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection.

McCall LI, Morton JT, Bernatchez JA, de Siqueira-Neto JL, Knight R, Dorrestein PC, McKerrow JH.

Anal Chem. 2017 Oct 3;89(19):10414-10421. doi: 10.1021/acs.analchem.7b02423. Epub 2017 Sep 22.

PMID:
28892370
8.

The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.

Hemmings SMJ, Malan-Müller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde ER, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA.

Psychosom Med. 2017 Oct;79(8):936-946. doi: 10.1097/PSY.0000000000000512.

PMID:
28700459
9.

An Elegan(t) Screen for Drug-Microbe Interactions.

Vrbanac A, Debelius JW, Jiang L, Morton JT, Dorrestein P, Knight R.

Cell Host Microbe. 2017 May 10;21(5):555-556. doi: 10.1016/j.chom.2017.04.014.

PMID:
28494234
10.

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping.

Amir A, McDonald D, Navas-Molina JA, Debelius J, Morton JT, Hyde E, Robbins-Pianka A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00199-16. doi: 10.1128/mSystems.00199-16. eCollection 2017 Mar-Apr.

11.

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns.

Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, Kightley EP, Thompson LR, Hyde ER, Gonzalez A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00191-16. doi: 10.1128/mSystems.00191-16. eCollection 2017 Mar-Apr.

12.

Uncovering the Horseshoe Effect in Microbial Analyses.

Morton JT, Toran L, Edlund A, Metcalf JL, Lauber C, Knight R.

mSystems. 2017 Feb 21;2(1). pii: e00166-16. doi: 10.1128/mSystems.00166-16. eCollection 2017 Jan-Feb. Erratum in: mSystems. 2018 Feb 6;3(1):.

13.

Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome.

Hill-Burns EM, Debelius JW, Morton JT, Wissemann WT, Lewis MR, Wallen ZD, Peddada SD, Factor SA, Molho E, Zabetian CP, Knight R, Payami H.

Mov Disord. 2017 May;32(5):739-749. doi: 10.1002/mds.26942. Epub 2017 Feb 14.

PMID:
28195358
14.

Balance Trees Reveal Microbial Niche Differentiation.

Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde ER, Lladser M, Dorrestein PC, Knight R.

mSystems. 2017 Jan 17;2(1). pii: e00162-16. doi: 10.1128/mSystems.00162-16. eCollection 2017 Jan-Feb.

15.

Bringing the Dynamic Microbiome to Life with Animations.

Vázquez-Baeza Y, Gonzalez A, Smarr L, McDonald D, Morton JT, Navas-Molina JA, Knight R.

Cell Host Microbe. 2017 Jan 11;21(1):7-10. doi: 10.1016/j.chom.2016.12.009.

16.

Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice.

Reber SO, Siebler PH, Donner NC, Morton JT, Smith DG, Kopelman JM, Lowe KR, Wheeler KJ, Fox JH, Hassell JE Jr, Greenwood BN, Jansch C, Lechner A, Schmidt D, Uschold-Schmidt N, Füchsl AM, Langgartner D, Walker FR, Hale MW, Lopez Perez G, Van Treuren W, González A, Halweg-Edwards AL, Fleshner M, Raison CL, Rook GA, Peddada SD, Knight R, Lowry CA.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):E3130-9. doi: 10.1073/pnas.1600324113. Epub 2016 May 16.

17.

A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins.

Morton JT, Freed SD, Lee SW, Friedberg I.

BMC Bioinformatics. 2015 Nov 11;16:381. doi: 10.1186/s12859-015-0792-9.

18.

SCOPE++: sequence classification of homoPolymer emissions.

Morton JT, Abrudan P, Figueroa N, Liang C, Karro JE.

Genomics. 2014 Sep;104(3):157-62. doi: 10.1016/j.ygeno.2014.07.005. Epub 2014 Aug 1.

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