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Items: 41


Genetic Costs of Domestication and Improvement.

Moyers BT, Morrell PL, McKay JK.

J Hered. 2018 Feb 14;109(2):103-116. doi: 10.1093/jhered/esx069.


Domestication: Polyploidy boosts domestication.

Fang Z, Morrell PL.

Nat Plants. 2016 Aug 2;2:16116. doi: 10.1038/nplants.2016.116. No abstract available.


Deleterious Variants in Asian Rice and the Potential Cost of Domestication.

Liu Q, Zhou Y, Morrell PL, Gaut BS.

Mol Biol Evol. 2017 Apr 1;34(4):908-924. doi: 10.1093/molbev/msw296.


angsd-wrapper: utilities for analysing next-generation sequencing data.

Durvasula A, Hoffman PJ, Kent TV, Liu C, Kono TJ, Morrell PL, Ross-Ibarra J.

Mol Ecol Resour. 2016 Nov;16(6):1449-1454. doi: 10.1111/1755-0998.12578. Epub 2016 Aug 29.


The Role of Deleterious Substitutions in Crop Genomes.

Kono TJ, Fu F, Mohammadi M, Hoffman PJ, Liu C, Stupar RM, Smith KP, Tiffin P, Fay JC, Morrell PL.

Mol Biol Evol. 2016 Sep;33(9):2307-17. doi: 10.1093/molbev/msw102. Epub 2016 Jun 14.


Development and Genetic Characterization of an Advanced Backcross-Nested Association Mapping (AB-NAM) Population of Wild × Cultivated Barley.

Nice LM, Steffenson BJ, Brown-Guedira GL, Akhunov ED, Liu C, Kono TJ, Morrell PL, Blake TK, Horsley RD, Smith KP, Muehlbauer GJ.

Genetics. 2016 Jul;203(3):1453-67. doi: 10.1534/genetics.116.190736. Epub 2016 May 10.


Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans.

Anderson JE, Kono TJ, Stupar RM, Kantar MB, Morrell PL.

G3 (Bethesda). 2016 Apr 7;6(4):835-43. doi: 10.1534/g3.116.026914.


The Effects of Both Recent and Long-Term Selection and Genetic Drift Are Readily Evident in North American Barley Breeding Populations.

Poets AM, Mohammadi M, Seth K, Wang H, Kono TJ, Fang Z, Muehlbauer GJ, Smith KP, Morrell PL.

G3 (Bethesda). 2015 Dec 29;6(3):609-22. doi: 10.1534/g3.115.024349.


Genomics and the Contrasting Dynamics of Annual and Perennial Domestication.

Gaut BS, Díez CM, Morrell PL.

Trends Genet. 2015 Dec;31(12):709-719. doi: 10.1016/j.tig.2015.10.002. Epub 2015 Nov 18. Review.


Nucleotide Sequence Diversity and Linkage Disequilibrium of Four Nuclear Loci in Foxtail Millet (Setaria italica).

He SL, Yang Y, Morrell PL, Yi TS.

PLoS One. 2015 Sep 1;10(9):e0137088. doi: 10.1371/journal.pone.0137088. eCollection 2015.


Barley landraces are characterized by geographically heterogeneous genomic origins.

Poets AM, Fang Z, Clegg MT, Morrell PL.

Genome Biol. 2015 Aug 21;16:173. doi: 10.1186/s13059-015-0712-3.


Two genomic regions contribute disproportionately to geographic differentiation in wild barley.

Fang Z, Gonzales AM, Clegg MT, Smith KP, Muehlbauer GJ, Steffenson BJ, Morrell PL.

G3 (Bethesda). 2014 Apr 22;4(7):1193-203. doi: 10.1534/g3.114.010561.


Resequencing data indicate a modest effect of domestication on diversity in barley: a cultigen with multiple origins.

Morrell PL, Gonzales AM, Meyer KK, Clegg MT.

J Hered. 2014 Mar-Apr;105(2):253-64. doi: 10.1093/jhered/est083. Epub 2013 Dec 11.


SNPMeta: SNP annotation and SNP metadata collection without a reference genome.

Kono TJ, Seth K, Poland JA, Morrell PL.

Mol Ecol Resour. 2014 Mar;14(2):419-25. doi: 10.1111/1755-0998.12183. Epub 2013 Nov 16.


Evidence of positive selection for a glycogen synthase (GYS1) mutation in domestic horse populations.

McCoy AM, Schaefer R, Petersen JL, Morrell PL, Slamka MA, Mickelson JR, Valberg SJ, McCue ME.

J Hered. 2014 Mar-Apr;105(2):163-72. doi: 10.1093/jhered/est075. Epub 2013 Nov 8.


Comparative analyses identify the contributions of exotic donors to disease resistance in a barley experimental population.

Fang Z, Eule-Nashoba A, Powers C, Kono TY, Takuno S, Morrell PL, Smith KP.

G3 (Bethesda). 2013 Nov 6;3(11):1945-53. doi: 10.1534/g3.113.007294.


Tracing the geographic origins of weedy Ipomoea purpurea in the southeastern United States.

Fang Z, Gonzales AM, Durbin ML, Meyer KK, Miller BH, Volz KM, Clegg MT, Morrell PL.

J Hered. 2013 Sep-Oct;104(5):666-77. doi: 10.1093/jhered/est046. Epub 2013 Jul 26.


Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.

Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N.

Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24.


Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars.

Cavanagh CR, Chao S, Wang S, Huang BE, Stephen S, Kiani S, Forrest K, Saintenac C, Brown-Guedira GL, Akhunova A, See D, Bai G, Pumphrey M, Tomar L, Wong D, Kong S, Reynolds M, da Silva ML, Bockelman H, Talbert L, Anderson JA, Dreisigacker S, Baenziger S, Carter A, Korzun V, Morrell PL, Dubcovsky J, Morell MK, Sorrells ME, Hayden MJ, Akhunov E.

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8057-62. doi: 10.1073/pnas.1217133110. Epub 2013 Apr 29.


Nucleotide sequence diversity of floral pigment genes in Mexican populations of Ipomoea purpurea (morning glory) accord with a neutral model of evolution.

Gonzales AM, Fang Z, Durbin ML, Meyer KK, Clegg MT, Morrell PL.

J Hered. 2012 Nov-Dec;103(6):863-72. doi: 10.1093/jhered/ess059. Epub 2012 Oct 22.


Comparative population genomics of maize domestication and improvement.

Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, Swanson-Wagner RA, Tiffin P, Wang J, Zhang G, Doebley J, McMullen MD, Ware D, Buckler ES, Yang S, Ross-Ibarra J.

Nat Genet. 2012 Jun 3;44(7):808-11. doi: 10.1038/ng.2309.


Megabase-scale inversion polymorphism in the wild ancestor of maize.

Fang Z, Pyhäjärvi T, Weber AL, Dawe RK, Glaubitz JC, González Jde J, Ross-Ibarra C, Doebley J, Morrell PL, Ross-Ibarra J.

Genetics. 2012 Jul;191(3):883-94. doi: 10.1534/genetics.112.138578. Epub 2012 Apr 27.


Crop genomics: advances and applications.

Morrell PL, Buckler ES, Ross-Ibarra J.

Nat Rev Genet. 2011 Dec 29;13(2):85-96. doi: 10.1038/nrg3097. Review.


Allele-specific PCR can improve the efficiency of experimental resolution of heterozygotes in resequencing studies.

Chen H, Morrell PL, Toleno DM, Lundy KE, Clegg MT.

Mol Ecol Resour. 2010 Jul;10(4):647-58. doi: 10.1111/j.1755-0998.2009.02804.x. Epub 2009 Dec 21.


Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.

Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Deal KR, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo H, Huo N, Lazo GR, Luo MC, Ma YQ, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

BMC Genomics. 2010 Dec 14;11:702. doi: 10.1186/1471-2164-11-702.


Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae.

Luo MC, Deal KR, Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo HY, Huo N, Lazo G, Ma Y, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15780-5. doi: 10.1073/pnas.0908195106. Epub 2009 Aug 26.


Genetic diversity and structure in semiwild and domesticated chiles (Capsicum annuum; Solanaceae) from Mexico.

Aguilar-Meléndez A, Morrell PL, Roose ML, Kim SC.

Am J Bot. 2009 Jun;96(6):1190-202. doi: 10.3732/ajb.0800155.


Tracing the geographic origins of major avocado cultivars.

Chen H, Morrell PL, Ashworth VE, de la Cruz M, Clegg MT.

J Hered. 2009 Jan-Feb;100(1):56-65. doi: 10.1093/jhered/esn068. Epub 2008 Sep 8.


Nucleotide diversity and linkage disequilibrium in wild avocado (Persea americana Mill.).

Chen H, Morrell PL, de la Cruz M, Clegg MT.

J Hered. 2008 Jul-Aug;99(4):382-9. doi: 10.1093/jhered/esn016. Epub 2008 Mar 14.


Error detection in SNP data by considering the likelihood of recombinational history implied by three-site combinations.

Toleno DM, Morrell PL, Clegg MT.

Bioinformatics. 2007 Jul 15;23(14):1807-14. Epub 2007 May 17.


Plant domestication, a unique opportunity to identify the genetic basis of adaptation.

Ross-Ibarra J, Morrell PL, Gaut BS.

Proc Natl Acad Sci U S A. 2007 May 15;104 Suppl 1:8641-8. Epub 2007 May 9.


Genetic evidence for a second domestication of barley (Hordeum vulgare) east of the Fertile Crescent.

Morrell PL, Clegg MT.

Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3289-94. Epub 2007 Feb 21.


Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity.

Morrell PL, Toleno DM, Lundy KE, Clegg MT.

Genetics. 2006 Jul;173(3):1705-23. Epub 2006 Apr 19.


Crop-to-weed introgression has impacted allelic composition of johnsongrass populations with and without recent exposure to cultivated sorghum.

Morrell PL, Williams-Coplin TD, Lattu AL, Bowers JE, Chandler JM, Paterson AH.

Mol Ecol. 2005 Jun;14(7):2143-54.


Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization.

Morrell PL, Toleno DM, Lundy KE, Clegg MT.

Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2442-7. Epub 2005 Feb 7.


Genes that determine flower color: the role of regulatory changes in the evolution of phenotypic adaptations.

Durbin ML, Lundy KE, Morrell PL, Torres-Martinez CL, Clegg MT.

Mol Phylogenet Evol. 2003 Dec;29(3):507-18.


Distinct geographic patterns of genetic diversity are maintained in wild barley (Hordeum vulgare ssp. spontaneum) despite migration.

Morrell PL, Lundy KE, Clegg MT.

Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):10812-7. Epub 2003 Sep 8.


Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation.

Draye X, Lin YR, Qian XY, Bowers JE, Burow GB, Morrell PL, Peterson DG, Presting GG, Ren SX, Wing RA, Paterson AH.

Plant Physiol. 2001 Mar;125(3):1325-41.


Multilocus interactions restrict gene introgression in interspecific populations of polyploid Gossypium (cotton).

Jiang CX, Chee PW, Draye X, Morrell PL, Smith CW, Paterson AH.

Evolution. 2000 Jun;54(3):798-814.


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