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Items: 1 to 50 of 66

1.

Identifying metabolic pathways for production of extracellular polymeric substances by the diatom Fragilariopsis cylindrus inhabiting sea ice.

Aslam SN, Strauss J, Thomas DN, Mock T, Underwood GJC.

ISME J. 2018 Jan 18. doi: 10.1038/s41396-017-0039-z. [Epub ahead of print]

PMID:
29348581
2.

Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrus.

Paajanen P, Strauss J, van Oosterhout C, McMullan M, Clark MD, Mock T.

Sci Data. 2017 Oct 10;4:170149. doi: 10.1038/sdata.2017.149.

3.

Identification of Genes under Positive Selection Reveals Differences in Evolutionary Adaptation between Brown-Algal Species.

Teng L, Fan X, Xu D, Zhang X, Mock T, Ye N.

Front Plant Sci. 2017 Aug 15;8:1429. doi: 10.3389/fpls.2017.01429. eCollection 2017.

4.

Biotic interactions as drivers of algal origin and evolution.

Brodie J, Ball SG, Bouget FY, Chan CX, De Clerck O, Cock JM, Gachon C, Grossman AR, Mock T, Raven JA, Saha M, Smith AG, Vardi A, Yoon HS, Bhattacharya D.

New Phytol. 2017 Nov;216(3):670-681. doi: 10.1111/nph.14760. Epub 2017 Aug 31. Review.

PMID:
28857164
5.

A role for the cell-wall protein silacidin in cell size of the diatom Thalassiosira pseudonana.

Kirkham AR, Richthammer P, Schmidt K, Wustmann M, Maeda Y, Hedrich R, Brunner E, Tanaka T, van Pée KH, Falciatore A, Mock T.

ISME J. 2017 Nov;11(11):2452-2464. doi: 10.1038/ismej.2017.100. Epub 2017 Jul 21.

6.

A de novo germline mutation of DLX3 in a Brown Swiss calf with tricho-dento-osseus-like syndrome.

Hofstetter S, Welle M, Gorgas D, Balmer P, Roosje P, Mock T, Meylan M, Jagannathan V, Drögemüller C.

Vet Dermatol. 2017 Dec;28(6):616-e150. doi: 10.1111/vde.12462. Epub 2017 Jul 2.

PMID:
28670783
7.

The Algal Revolution.

Brodie J, Chan CX, De Clerck O, Cock JM, Coelho SM, Gachon C, Grossman AR, Mock T, Raven JA, Smith AG, Yoon HS, Bhattacharya D.

Trends Plant Sci. 2017 Aug;22(8):726-738. doi: 10.1016/j.tplants.2017.05.005. Epub 2017 Jun 10. Review.

PMID:
28610890
8.

Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom.

Basu S, Patil S, Mapleson D, Russo MT, Vitale L, Fevola C, Maumus F, Casotti R, Mock T, Caccamo M, Montresor M, Sanges R, Ferrante MI.

New Phytol. 2017 Jul;215(1):140-156. doi: 10.1111/nph.14557. Epub 2017 Apr 21.

9.

Phycoremediation of municipal wastewater by microalgae to produce biofuel.

Singh AK, Sharma N, Farooqi H, Abdin MZ, Mock T, Kumar S.

Int J Phytoremediation. 2017 Sep 2;19(9):805-812. doi: 10.1080/15226514.2017.1284758. Erratum in: Int J Phytoremediation. 2018 Feb 23;20(3):293.

PMID:
28156133
10.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV.

Nature. 2017 Jan 26;541(7638):536-540. doi: 10.1038/nature20803. Epub 2017 Jan 16.

11.

The effect of extrinsic mortality on genome size evolution in prokaryotes.

Bentkowski P, van Oosterhout C, Ashby B, Mock T.

ISME J. 2017 Apr;11(4):1011-1018. doi: 10.1038/ismej.2016.165. Epub 2016 Dec 6.

12.

Editing of the urease gene by CRISPR-Cas in the diatom Thalassiosira pseudonana.

Hopes A, Nekrasov V, Kamoun S, Mock T.

Plant Methods. 2016 Nov 24;12:49. eCollection 2016.

13.

Clinicopathological Phenotype of Autosomal Recessive Cholesterol Deficiency in Holstein Cattle.

Mock T, Mehinagic K, Menzi F, Studer E, Oevermann A, Stoffel MH, Drögemüller C, Meylan M, Regenscheit N.

J Vet Intern Med. 2016 Jul;30(4):1369-75. doi: 10.1111/jvim.13976. Epub 2016 Jun 8.

14.

Characterization of the Small RNA Transcriptome of the Marine Coccolithophorid, Emiliania huxleyi.

Zhang X, Gamarra J, Castro S, Carrasco E, Hernandez A, Mock T, Hadaegh AR, Read BA.

PLoS One. 2016 Apr 21;11(4):e0154279. doi: 10.1371/journal.pone.0154279. eCollection 2016.

15.

A transposable element insertion in APOB causes cholesterol deficiency in Holstein cattle.

Menzi F, Besuchet-Schmutz N, Fragnière M, Hofstetter S, Jagannathan V, Mock T, Raemy A, Studer E, Mehinagic K, Regenscheit N, Meylan M, Schmitz-Hsu F, Drögemüller C.

Anim Genet. 2016 Apr;47(2):253-7. doi: 10.1111/age.12410. Epub 2016 Jan 13.

16.

A Model of Genome Size Evolution for Prokaryotes in Stable and Fluctuating Environments.

Bentkowski P, Van Oosterhout C, Mock T.

Genome Biol Evol. 2015 Aug 4;7(8):2344-51. doi: 10.1093/gbe/evv148.

17.

Uterine torsion in Brown Swiss cattle: retrospective analysis from an alpine practice in Switzerland.

Mock T, Hehenberger E, Steiner A, Hüsler J, Hirsbrunner G.

Vet Rec. 2015 Aug 8;177(6):152. doi: 10.1136/vr.103021. Epub 2015 Jun 26. No abstract available.

PMID:
26116267
18.

Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes.

Mock T, Daines SJ, Geider R, Collins S, Metodiev M, Millar AJ, Moulton V, Lenton TM.

Glob Chang Biol. 2016 Jan;22(1):61-75. doi: 10.1111/gcb.12983. Epub 2015 Jul 28. Review.

19.

In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice.

Uhlig C, Kilpert F, Frickenhaus S, Kegel JU, Krell A, Mock T, Valentin K, Beszteri B.

ISME J. 2015 Nov;9(11):2537-40. doi: 10.1038/ismej.2015.43. Epub 2015 Apr 17.

20.

Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage.

Gruber A, Rocap G, Kroth PG, Armbrust EV, Mock T.

Plant J. 2015 Feb;81(3):519-28. doi: 10.1111/tpj.12734. Epub 2015 Jan 6.

21.

Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation.

Toseland A, Moxon S, Mock T, Moulton V.

BMC Genomics. 2014 Oct 15;15:901. doi: 10.1186/1471-2164-15-901.

22.

Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages.

McRose D, Guo J, Monier A, Sudek S, Wilken S, Yan S, Mock T, Archibald JM, Begley TP, Reyes-Prieto A, Worden AZ.

ISME J. 2014 Dec;8(12):2517-29. doi: 10.1038/ismej.2014.146. Epub 2014 Aug 29.

23.

Global discovery and characterization of small non-coding RNAs in marine microalgae.

Lopez-Gomollon S, Beckers M, Rathjen T, Moxon S, Maumus F, Mohorianu I, Moulton V, Dalmay T, Mock T.

BMC Genomics. 2014 Aug 20;15:697. doi: 10.1186/1471-2164-15-697.

24.

A novel cost effective and high-throughput isolation and identification method for marine microalgae.

Jahn MT, Schmidt K, Mock T.

Plant Methods. 2014 Aug 7;10:26. doi: 10.1186/1746-4811-10-26. eCollection 2014.

25.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

26.

Polar Microalgae: New Approaches towards Understanding Adaptations to an Extreme and Changing Environment.

Lyon BR, Mock T.

Biology (Basel). 2014 Jan 28;3(1):56-80. doi: 10.3390/biology3010056.

27.

The protein phosphatase 2A regulatory subunit B56γ mediates suppression of T cell receptor (TCR)-induced nuclear factor-κB (NF-κB) activity.

Breuer R, Becker MS, Brechmann M, Mock T, Arnold R, Krammer PH.

J Biol Chem. 2014 May 23;289(21):14996-5004. doi: 10.1074/jbc.M113.533547. Epub 2014 Apr 9.

28.

2-Methoxyestradiol inhibits experimental autoimmune encephalomyelitis through suppression of immune cell activation.

Duncan GS, Brenner D, Tusche MW, Brüstle A, Knobbe CB, Elia AJ, Mock T, Bray MR, Krammer PH, Mak TW.

Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):21034-9. doi: 10.1073/pnas.1215558110. Epub 2012 Dec 3.

29.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
30.

A PP4 holoenzyme balances physiological and oncogenic nuclear factor-kappa B signaling in T lymphocytes.

Brechmann M, Mock T, Nickles D, Kiessling M, Weit N, Breuer R, Müller W, Wabnitz G, Frey F, Nicolay JP, Booken N, Samstag Y, Klemke CD, Herling M, Boutros M, Krammer PH, Arnold R.

Immunity. 2012 Oct 19;37(4):697-708. doi: 10.1016/j.immuni.2012.07.014.

31.

The response of diatom central carbon metabolism to nitrogen starvation is different from that of green algae and higher plants.

Hockin NL, Mock T, Mulholland F, Kopriva S, Malin G.

Plant Physiol. 2012 Jan;158(1):299-312. doi: 10.1104/pp.111.184333. Epub 2011 Nov 7.

32.

Digital expression profiling of novel diatom transcripts provides insight into their biological functions.

Maheswari U, Jabbari K, Petit JL, Porcel BM, Allen AE, Cadoret JP, De Martino A, Heijde M, Kaas R, La Roche J, Lopez PJ, Martin-Jézéquel V, Meichenin A, Mock T, Schnitzler Parker M, Vardi A, Armbrust EV, Weissenbach J, Katinka M, Bowler C.

Genome Biol. 2010;11(8):R85. doi: 10.1186/gb-2010-11-8-r85. Epub 2010 Aug 25.

33.

Heterogeneous accretion and the moderately volatile element budget of Earth.

Schönbächler M, Carlson RW, Horan MF, Mock TD, Hauri EH.

Science. 2010 May 14;328(5980):884-7. doi: 10.1126/science.1186239.

34.

Antifreeze proteins in polar sea ice diatoms: diversity and gene expression in the genus Fragilariopsis.

Bayer-Giraldi M, Uhlig C, John U, Mock T, Valentin K.

Environ Microbiol. 2010 Apr;12(4):1041-52. doi: 10.1111/j.1462-2920.2009.02149.x. Epub 2010 Jan 26.

PMID:
20105220
35.

Cesium chloride-induced torsades de pointes.

Wiens M, Gordon W, Baulcomb D, Mattman A, Mock T, Brown R.

Can J Cardiol. 2009 Sep;25(9):e329-31.

36.

Phosphorylation of CARMA1 by HPK1 is critical for NF-kappaB activation in T cells.

Brenner D, Brechmann M, Röhling S, Tapernoux M, Mock T, Winter D, Lehmann WD, Kiefer F, Thome M, Krammer PH, Arnold R.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14508-13. doi: 10.1073/pnas.0900457106. Epub 2009 Aug 11.

37.

Does troponin-I measurement predict low cardiac output syndrome following cardiac surgery in children?

Froese NR, Sett SS, Mock T, Krahn GE.

Crit Care Resusc. 2009 Jun;11(2):116-21.

PMID:
19485875
38.

Chitin in diatoms and its association with the cell wall.

Durkin CA, Mock T, Armbrust EV.

Eukaryot Cell. 2009 Jul;8(7):1038-50. doi: 10.1128/EC.00079-09. Epub 2009 May 8.

39.

Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.

Worden AZ, Lee JH, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, McDonald SM, Parker MS, Rombauts S, Salamov A, Von Dassow P, Badger JH, Coutinho PM, Demir E, Dubchak I, Gentemann C, Eikrem W, Gready JE, John U, Lanier W, Lindquist EA, Lucas S, Mayer KF, Moreau H, Not F, Otillar R, Panaud O, Pangilinan J, Paulsen I, Piegu B, Poliakov A, Robbens S, Schmutz J, Toulza E, Wyss T, Zelensky A, Zhou K, Armbrust EV, Bhattacharya D, Goodenough UW, Van de Peer Y, Grigoriev IV.

Science. 2009 Apr 10;324(5924):268-72. doi: 10.1126/science.1167222.

40.

Update of the Diatom EST Database: a new tool for digital transcriptomics.

Maheswari U, Mock T, Armbrust EV, Bowler C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D1001-5. doi: 10.1093/nar/gkn905. Epub 2008 Nov 23.

41.

Genomic insights into marine microalgae.

Parker MS, Mock T, Armbrust EV.

Annu Rev Genet. 2008;42:619-45. doi: 10.1146/annurev.genet.42.110807.091417. Review.

PMID:
18983264
42.

The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV.

Nature. 2008 Nov 13;456(7219):239-44. doi: 10.1038/nature07410. Epub 2008 Oct 15.

PMID:
18923393
43.

Elevated free thyroxin levels following low molecular weight heparin treatment in a premature neonate.

Haim A, Chanoine JP, Albersheim S, Mock T.

Acta Paediatr. 2008 Dec;97(12):1601. doi: 10.1111/j.1651-2227.2008.01047.x. Epub 2008 Sep 20. No abstract available.

PMID:
18811681
44.

CD95 stimulation results in the formation of a novel death effector domain protein-containing complex.

Lavrik IN, Mock T, Golks A, Hoffmann JC, Baumann S, Krammer PH.

J Biol Chem. 2008 Sep 26;283(39):26401-8. doi: 10.1074/jbc.M800823200. Epub 2008 Jul 17.

45.

Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses.

Mock T, Samanta MP, Iverson V, Berthiaume C, Robison M, Holtermann K, Durkin C, Bondurant SS, Richmond K, Rodesch M, Kallas T, Huttlin EL, Cerrina F, Sussman MR, Armbrust EV.

Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1579-84. doi: 10.1073/pnas.0707946105. Epub 2008 Jan 22.

46.

A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis.

Kroth PG, Chiovitti A, Gruber A, Martin-Jezequel V, Mock T, Parker MS, Stanley MS, Kaplan A, Caron L, Weber T, Maheswari U, Armbrust EV, Bowler C.

PLoS One. 2008 Jan 9;3(1):e1426. doi: 10.1371/journal.pone.0001426.

47.

Estimating pediatric glomerular filtration rates in the era of chronic kidney disease staging.

Mattman A, Eintracht S, Mock T, Schick G, Seccombe DW, Hurley RM, White CT.

J Am Soc Nephrol. 2006 Feb;17(2):487-96. Epub 2005 Dec 21.

48.
49.
50.

Recent advances in sea-ice microbiology.

Mock T, Thomas DN.

Environ Microbiol. 2005 May;7(5):605-19. Review.

PMID:
15819843

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