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Items: 5

1.

A comparative evaluation of genome assembly reconciliation tools.

Alhakami H, Mirebrahim H, Lonardi S.

Genome Biol. 2017 May 18;18(1):93. doi: 10.1186/s13059-017-1213-3.

2.

Genome resources for climate-resilient cowpea, an essential crop for food security.

Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ.

Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3.

3.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

4.

De novo meta-assembly of ultra-deep sequencing data.

Mirebrahim H, Close TJ, Lonardi S.

Bioinformatics. 2015 Jun 15;31(12):i9-16. doi: 10.1093/bioinformatics/btv226.

5.

When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.

Lonardi S, Mirebrahim H, Wanamaker S, Alpert M, Ciardo G, Duma D, Close TJ.

Bioinformatics. 2015 Sep 15;31(18):2972-80. doi: 10.1093/bioinformatics/btv311. Epub 2015 May 20.

PMID:
25995232

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