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Items: 1 to 50 of 74

1.

Virus-encoded miRNAs in Ebola virus disease.

Duy J, Honko AN, Altamura LA, Bixler SL, Wollen-Roberts S, Wauquier N, O'Hearn A, Mucker EM, Johnson JC, Shamblin JD, Zelko J, Botto MA, Bangura J, Coomber M, Pitt ML, Gonzalez JP, Schoepp RJ, Goff AJ, Minogue TD.

Sci Rep. 2018 Apr 24;8(1):6480. doi: 10.1038/s41598-018-23916-z.

2.

A conserved transcriptional response to intranasal Ebola virus exposure in nonhuman primates prior to onset of fever.

Speranza E, Bixler SL, Altamura LA, Arnold CE, Pratt WD, Taylor-Howell C, Burrows C, Aguilar W, Rossi F, Shamblin JD, Wollen SE, Zelko JM, Minogue T, Nagle E, Palacios G, Goff AJ, Connor JH.

Sci Transl Med. 2018 Mar 28;10(434). pii: eaaq1016. doi: 10.1126/scitranslmed.aaq1016.

PMID:
29593102
3.

Detection of 16S rRNA and KPC Genes from Complex Matrix Utilizing a Molecular Inversion Probe Assay for Next-Generation Sequencing.

Stefan CP, Hall AT, Minogue TD.

Sci Rep. 2018 Feb 1;8(1):2028. doi: 10.1038/s41598-018-19501-z.

4.

Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species".

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, Rosenzweig CN, Palacios GF, Redden CL, Minogue TD, Chain PS.

Genome Announc. 2018 Jan 18;6(3). pii: e01144-17. doi: 10.1128/genomeA.01144-17. No abstract available.

5.

African and Asian Zika Virus Isolates Display Phenotypic Differences Both In Vitro and In Vivo.

Smith DR, Sprague TR, Hollidge BS, Valdez SM, Padilla SL, Bellanca SA, Golden JW, Coyne SR, Kulesh DA, Miller LJ, Haddow AD, Koehler JW, Gromowski GD, Jarman RG, Alera MTP, Yoon IK, Buathong R, Lowen RG, Kane CD, Minogue TD, Bavari S, Tesh RB, Weaver SC, Linthicum KJ, Pitt ML, Nasar F.

Am J Trop Med Hyg. 2018 Feb;98(2):432-444. doi: 10.4269/ajtmh.17-0685. Epub 2017 Dec 21.

PMID:
29280428
6.

Sequence Optimized Real-Time Reverse Transcription Polymerase Chain Reaction Assay for Detection of Crimean-Congo Hemorrhagic Fever Virus.

Koehler JW, Delp KL, Hall AT, Olschner SP, Kearney BJ, Garrison AR, Altamura LA, Rossi CA, Minogue TD.

Am J Trop Med Hyg. 2018 Jan;98(1):211-215. doi: 10.4269/ajtmh.17-0165.

PMID:
29165231
7.

Comparison of Transcriptomic Platforms for Analysis of Whole Blood from Ebola-Infected Cynomolgus Macaques.

Speranza E, Altamura LA, Kulcsar K, Bixler SL, Rossi CA, Schoepp RJ, Nagle E, Aguilar W, Douglas CE, Delp KL, Minogue TD, Palacios G, Goff AJ, Connor JH.

Sci Rep. 2017 Nov 7;7(1):14756. doi: 10.1038/s41598-017-15145-7.

8.

Semi-quantitative MALDI-TOF for antimicrobial susceptibility testing in Staphylococcus aureus.

Maxson T, Taylor-Howell CL, Minogue TD.

PLoS One. 2017 Aug 31;12(8):e0183899. doi: 10.1371/journal.pone.0183899. eCollection 2017.

9.

Draft Genome Sequences of Eight Crimean-Congo Hemorrhagic Fever Virus Strains.

Koehler JW, Delp KL, Kearney BJ, Conrad TA, Schoepp RJ, Garrison AR, Altamura LA, Rossi CA, Minogue TD.

Genome Announc. 2017 Jun 8;5(23). pii: e00240-17. doi: 10.1128/genomeA.00240-17.

10.

Inactivation of West Nile virus in serum with heat, ionic detergent, and reducing agent for proteomic applications.

Altamura LA, Cazares LH, Coyne SR, Jaissle JG, Jespersen AM, Ahmed S, Wasieloski LP, Garrison J, Kulesh DA, Brueggemann EE, Kenny T, Ward MD, Harbourt DE, Minogue TD.

J Virol Methods. 2017 Oct;248:1-6. doi: 10.1016/j.jviromet.2017.05.010. Epub 2017 May 19.

11.

Neuropathogenesis of Zika Virus in a Highly Susceptible Immunocompetent Mouse Model after Antibody Blockade of Type I Interferon.

Smith DR, Hollidge B, Daye S, Zeng X, Blancett C, Kuszpit K, Bocan T, Koehler JW, Coyne S, Minogue T, Kenny T, Chi X, Yim S, Miller L, Schmaljohn C, Bavari S, Golden JW.

PLoS Negl Trop Dis. 2017 Jan 9;11(1):e0005296. doi: 10.1371/journal.pntd.0005296. eCollection 2017 Jan.

12.

Targeted Next-Generation Sequencing for Diagnostics and Forensics.

Minogue TD, Koehler JW, Norwood DA.

Clin Chem. 2017 Feb;63(2):450-452. doi: 10.1373/clinchem.2016.256065. Epub 2016 Dec 8. No abstract available.

13.
14.

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor.

Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Ketheesan N, Mayo M, Hoffmaster A, Elrod MG, Wuthiekanun V, Tuanyok A, Norton R, Currie BJ, Wagner DM, Keim P, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2016 Apr 21;4(2). pii: e00313-16. doi: 10.1128/genomeA.00313-16. No abstract available.

15.

Circulating microRNA profiles of Ebola virus infection.

Duy J, Koehler JW, Honko AN, Schoepp RJ, Wauquier N, Gonzalez JP, Pitt ML, Mucker EM, Johnson JC, O'Hearn A, Bangura J, Coomber M, Minogue TD.

Sci Rep. 2016 Apr 21;6:24496. doi: 10.1038/srep24496.

16.

Development of real-time reverse transcriptase qPCR assays for the detection of Punta Toro virus and Pichinde virus.

Stefan CP, Chase K, Coyne S, Kulesh DA, Minogue TD, Koehler JW.

Virol J. 2016 Mar 31;13:54. doi: 10.1186/s12985-016-0509-3.

17.

Draft Genomes for Eight Burkholderia mallei Isolates from Turkey.

Daligault HE, Johnson SL, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Wolcott MJ, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Chain PS.

Genome Announc. 2016 Jan 7;4(1). pii: e01234-15. doi: 10.1128/genomeA.01234-15.

18.

Demonstration of the Pre-Emergency Use Authorization Path Using 3 Minor Groove Binder-Hydrolysis Probe Assays to Detect Escherichia coli O104:H4.

Hartman LJ, Heinrich ML, Zovanyi AM, Ingram MF, Hobson JP, Kulesh DA, Craw PD, Jaissle JG, Norwood DA, Minogue TD.

Clin Chem. 2015 Nov;61(11):1391-8. doi: 10.1373/clinchem.2015.242750. Epub 2015 Sep 17.

19.

Finished Genome Assembly of Warm Spring Isolate Francisella novicida DPG 3A-IS.

Johnson SL, Minogue TD, Daligault HE, Wolcott MJ, Teshima H, Coyne SR, Davenport KW, Jaissle JG, Chain PS.

Genome Announc. 2015 Sep 17;3(5). pii: e01046-15. doi: 10.1128/genomeA.01046-15.

20.

Finished Genome Assembly of Yersinia pestis EV76D and KIM 10v.

Johnson SL, Minogue TD, Daligault HE, Wolcott MJ, Teshima H, Coyne SR, Davenport KW, Jaissle JG, Chain PS.

Genome Announc. 2015 Sep 17;3(5). pii: e01024-15. doi: 10.1128/genomeA.01024-15.

21.

Development of real-time PCR assays for the detection of Moraxella macacae associated with bloody nose syndrome in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques.

Whitehouse CA, Chase K, Embers ME, Kulesh DA, Ladner JT, Palacios GF, Minogue TD.

J Med Primatol. 2015 Dec;44(6):364-72. doi: 10.1111/jmp.12196. Epub 2015 Sep 14.

22.

Real-time reverse transcriptase polymerase chain reaction assays for Middle East Respiratory Syndrome.

Douglas CE, Kulesh DA, Jaissle JG, Minogue TD.

Mol Cell Probes. 2015 Dec;29(6):511-513. doi: 10.1016/j.mcp.2015.09.001. Epub 2015 Sep 11.

PMID:
26365228
23.

Evaluation of Signature Erosion in Ebola Virus Due to Genomic Drift and Its Impact on the Performance of Diagnostic Assays.

Sozhamannan S, Holland MY, Hall AT, Negrón DA, Ivancich M, Koehler JW, Minogue TD, Campbell CE, Berger WJ, Christopher GW, Goodwin BG, Smith MA.

Viruses. 2015 Jun 17;7(6):3130-54. doi: 10.3390/v7062763.

24.

Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia.

Kugelman JR, Wiley MR, Mate S, Ladner JT, Beitzel B, Fakoli L, Taweh F, Prieto K, Diclaro JW, Minogue T, Schoepp RJ, Schaecher KE, Pettitt J, Bateman S, Fair J, Kuhn JH, Hensley L, Park DJ, Sabeti PC, Sanchez-Lockhart M, Bolay FK, Palacios G; US Army Medical Research Institute of Infectious Diseases; National Institutes of Health; Integrated Research Facility–Frederick Ebola Response Team 2014–2015.

Emerg Infect Dis. 2015 Jul;21(7):1135-43. doi: 10.3201/eid2107.150522.

25.

Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor.

Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00159-15. doi: 10.1128/genomeA.00159-15. Erratum in: Genome Announc. 2016;4(2). pii: e00313-16. doi: 10.1128/genomeA.00313-16.

26.

Complete genome sequences for 35 biothreat assay-relevant bacillus species.

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, Rosenzweig CN, Palacios GF, Redden CL, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00151-15. doi: 10.1128/genomeA.00151-15. Erratum in: Genome Announc. 2018 Jan 18;6(3):.

27.

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00148-15. doi: 10.1128/genomeA.00148-15.

28.

Genome sequencing of 18 francisella strains to aid in assay development and testing.

Johnson SL, Daligault HE, Davenport KW, Coyne SR, Frey KG, Koroleva GI, Broomall SM, Bishop-Lilly KA, Bruce DC, Chertkov O, Freitas T, Jaissle J, Ladner JT, Rosenzweig CN, Gibbons HS, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00147-15. doi: 10.1128/genomeA.00147-15.

29.

Optimized microRNA purification from TRIzol-treated plasma.

Duy J, Koehler JW, Honko AN, Minogue TD.

BMC Genomics. 2015 Feb 18;16:95. doi: 10.1186/s12864-015-1299-5.

30.

Finished Genome Sequence of Bacillus cereus Strain 03BB87, a Clinical Isolate with B. anthracis Virulence Genes.

Johnson SL, Minogue TD, Teshima H, Davenport KW, Shea AA, Miner HL, Wolcott MJ, Chain PS.

Genome Announc. 2015 Jan 15;3(1). pii: e01446-14. doi: 10.1128/genomeA.01446-14.

31.

Whole-genome assemblies of 56 burkholderia species.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Johnson SL.

Genome Announc. 2014 Nov 20;2(6). pii: e01106-14. doi: 10.1128/genomeA.01106-14.

32.

Complete Genome Assembly of Staphylococcus epidermidis AmMS 205.

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Redden CL, Rosenzweig CN, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Nov 6;2(6). pii: e01059-14. doi: 10.1128/genomeA.01059-14.

33.

Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Lo CC, Meincke L, Munk AC, Redden CL, Rosenzweig CN, Johnson SL.

Genome Announc. 2014 Oct 30;2(5). pii: e01052-14. doi: 10.1128/genomeA.01052-14.

34.

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ.

Bishop-Lilly KA, Frey KG, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01084-14. doi: 10.1128/genomeA.01084-14.

35.

Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672.

Frey KG, Bishop-Lilly KA, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01082-14. doi: 10.1128/genomeA.01082-14.

36.

Complete Genome Assembly of Corynebacterium sp. Strain ATCC 6931.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Li PE, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01074-14. doi: 10.1128/genomeA.01074-14.

37.

Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.

Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01073-14. doi: 10.1128/genomeA.01073-14.

38.

Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137.

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Palacios GF, Redden CL, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01070-14. doi: 10.1128/genomeA.01070-14.

39.

Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132.

Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01064-14. doi: 10.1128/genomeA.01064-14.

40.

Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01055-14. doi: 10.1128/genomeA.01055-14.

41.

Twenty Whole-Genome Bacillus sp. Assemblies.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Johnson SL.

Genome Announc. 2014 Oct 9;2(5). pii: e00958-14. doi: 10.1128/genomeA.00958-14.

42.

Complete Genome Assembly of Escherichia coli ATCC 25922, a Serotype O6 Reference Strain.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Redden CL, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00969-14. doi: 10.1128/genomeA.00969-14.

43.

Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain.

Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00968-14. doi: 10.1128/genomeA.00968-14.

44.

Genome Assembly of Serratia marcescens Type Strain ATCC 13880.

Daligault HE, Davenport KW, Minogue TD, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Rosenzweig CN, Scholz M, Teshima H, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00967-14. doi: 10.1128/genomeA.00967-14.

45.

Complete Genome Assembly of Reference Strain Ochrobactrum anthropi ATCC 49687.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00962-14. doi: 10.1128/genomeA.00962-14.

46.

Draft Genome Assembly of Neisseria lactamica Type Strain A7515.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00951-14. doi: 10.1128/genomeA.00951-14.

47.

Whole-genome sequences of nine francisella isolates.

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Teshima H, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00941-14. doi: 10.1128/genomeA.00941-14.

48.

Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883.

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00939-14. doi: 10.1128/genomeA.00939-14.

49.

Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247).

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Lo CC, Meincke L, Munk AC, Redden CL, Rosenzweig CN, Johnson SL.

Genome Announc. 2014 Oct 2;2(5). pii: e00961-14. doi: 10.1128/genomeA.00961-14.

50.

Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501.

Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Chertkov O, Freitas T, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 2;2(5). pii: e00960-14. doi: 10.1128/genomeA.00960-14.

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