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Multiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples.

Hooper CM, Stevens TJ, Saukkonen A, Castleden IR, Singh P, Mann GW, Fabre B, Ito J, Deery MJ, Lilley KS, Petzold CJ, Millar AH, Heazlewood JL, Parsons HT.

Plant J. 2017 Dec;92(6):1202-1217. doi: 10.1111/tpj.13743. Epub 2017 Nov 20.


Connecting salt stress signalling pathways with salinity-induced changes in mitochondrial metabolic processes in C3 plants.

Che-Othman MH, Millar AH, Taylor NL.

Plant Cell Environ. 2017 Dec;40(12):2875-2905. doi: 10.1111/pce.13034. Epub 2017 Oct 6. Review.


Variation in Leaf Respiration Rates at Night Correlates with Carbohydrate and Amino Acid Supply.

O'Leary BM, Lee CP, Atkin OK, Cheng R, Brown TB, Millar AH.

Plant Physiol. 2017 Aug;174(4):2261-2273. doi: 10.1104/pp.17.00610. Epub 2017 Jun 14.


The Mitochondrial DNA-Associated Protein SWIB5 Influences mtDNA Architecture and Homologous Recombination.

Blomme J, Van Aken O, Van Leene J, Jégu T, De Rycke R, De Bruyne M, Vercruysse J, Nolf J, Van Daele T, De Milde L, Vermeersch M, des Francs-Small CC, De Jaeger G, Benhamed M, Millar AH, Inzé D, Gonzalez N.

Plant Cell. 2017 May;29(5):1137-1156. doi: 10.1105/tpc.16.00899. Epub 2017 Apr 18.


An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.

Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD.

Genome Res. 2017 May;27(5):885-896. doi: 10.1101/gr.217117.116.


The combination of gas-phase fluorophore technology and automation to enable high-throughput analysis of plant respiration.

Scafaro AP, Negrini ACA, O'Leary B, Rashid FAA, Hayes L, Fan Y, Zhang Y, Chochois V, Badger MR, Millar AH, Atkin OK.

Plant Methods. 2017 Mar 21;13:16. doi: 10.1186/s13007-017-0169-3. eCollection 2017.


Salicylic Acid-Dependent Plant Stress Signaling via Mitochondrial Succinate Dehydrogenase.

Belt K, Huang S, Thatcher LF, Casarotto H, Singh KB, Van Aken O, Millar AH.

Plant Physiol. 2017 Apr;173(4):2029-2040. doi: 10.1104/pp.16.00060. Epub 2017 Feb 16.


Protein Degradation Rate in Arabidopsis thaliana Leaf Growth and Development.

Li L, Nelson CJ, Trösch J, Castleden I, Huang S, Millar AH.

Plant Cell. 2017 Feb;29(2):207-228. doi: 10.1105/tpc.16.00768. Epub 2017 Jan 30.


Insights into the molecular basis of long-term storage and survival of sperm in the honeybee (Apis mellifera).

Paynter E, Millar AH, Welch M, Baer-Imhoof B, Cao D, Baer B.

Sci Rep. 2017 Jan 16;7:40236. doi: 10.1038/srep40236.


Major Cys protease activities are not essential for senescence in individually darkened Arabidopsis leaves.

Pružinská A, Shindo T, Niessen S, Kaschani F, Tóth R, Millar AH, van der Hoorn RA.

BMC Plant Biol. 2017 Jan 6;17(1):4. doi: 10.1186/s12870-016-0955-5.


Mitochondrial Lon1 has a role in homeostasis of the mitochondrial ribosome and pentatricopeptide repeat proteins in plants.

Li L, Millar AH, Huang S.

Plant Signal Behav. 2017 Feb;12(2):e1276686. doi: 10.1080/15592324.2016.1276686.


Temporal development of the barley leaf metabolic response to Pi limitation.

Alexova R, Nelson CJ, Millar AH.

Plant Cell Environ. 2017 May;40(5):645-657. doi: 10.1111/pce.12882. Epub 2017 Mar 20.


SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations.

Hooper CM, Castleden IR, Tanz SK, Aryamanesh N, Millar AH.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041. Epub 2016 Nov 28.


MSL1 is a mechanosensitive ion channel that dissipates mitochondrial membrane potential and maintains redox homeostasis in mitochondria during abiotic stress.

Lee CP, Maksaev G, Jensen GS, Murcha MW, Wilson ME, Fricker M, Hell R, Haswell ES, Millar AH, Sweetlove LJ.

Plant J. 2016 Dec;88(5):809-825. doi: 10.1111/tpj.13301. Epub 2016 Nov 3.


Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.

Van Aken O, Ford E, Lister R, Huang S, Millar AH.

Plant J. 2016 Nov;88(4):542-558. doi: 10.1111/tpj.13276. Epub 2016 Oct 17.


Resource: Mapping the Triticum aestivum proteome.

Duncan O, Trösch J, Fenske R, Taylor NL, Millar AH.

Plant J. 2017 Feb;89(3):601-616. doi: 10.1111/tpj.13402. Epub 2017 Feb 1.


Isolation of Mitochondria, Their Sub-Organellar Compartments, and Membranes.

Duncan O, Millar AH, Taylor NL.

Methods Mol Biol. 2017;1511:83-96.


The Isolation of Plant Organelles and Structures in the Post-genomic Era.

Millar AH, Taylor NL.

Methods Mol Biol. 2017;1511:1-11. Review.


Changes in specific protein degradation rates in Arabidopsis thaliana reveal multiple roles of Lon1 in mitochondrial protein homeostasis.

Li L, Nelson C, Fenske R, Trösch J, Pružinská A, Millar AH, Huang S.

Plant J. 2017 Feb;89(3):458-471. doi: 10.1111/tpj.13392. Epub 2017 Jan 7.


Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.

Hu Z, Vanderhaeghen R, Cools T, Wang Y, De Clercq I, Leroux O, Nguyen L, Belt K, Millar AH, Audenaert D, Hilson P, Small ID, Mouille G, Vernhettes S, Van Breusegem F, Whelan J, Höfte H, De Veylder L.

Plant Cell. 2016 Aug 19. pii: tpc.00540.2016. [Epub ahead of print]


Infections with the Sexually Transmitted Pathogen Nosema apis Trigger an Immune Response in the Seminal Fluid of Honey Bees (Apis mellifera).

Grassl J, Peng Y, Baer-Imhoof B, Welch M, Millar AH, Baer B.

J Proteome Res. 2017 Jan 6;16(1):319-334. doi: 10.1021/acs.jproteome.6b00051. Epub 2016 Jul 29.


Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.

Van Aken O, De Clercq I, Ivanova A, Law SR, Van Breusegem F, Millar AH, Whelan J.

Plant Physiol. 2016 Jul;171(3):2150-65. doi: 10.1104/pp.16.00273. Epub 2016 May 9.


Loss of Mitochondrial Malate Dehydrogenase Activity Alters Seed Metabolism Impairing Seed Maturation and Post-Germination Growth in Arabidopsis.

Sew YS, Ströher E, Fenske R, Millar AH.

Plant Physiol. 2016 Jun;171(2):849-63. doi: 10.1104/pp.16.01654. Epub 2016 Apr 12.


The Plant Mitochondrial Transportome: Balancing Metabolic Demands with Energetic Constraints.

Lee CP, Millar AH.

Trends Plant Sci. 2016 Aug;21(8):662-676. doi: 10.1016/j.tplants.2016.04.003. Epub 2016 May 6. Review.


The Roles of Mitochondrial Reactive Oxygen Species in Cellular Signaling and Stress Response in Plants.

Huang S, Van Aken O, Schwarzländer M, Belt K, Millar AH.

Plant Physiol. 2016 Jul;171(3):1551-9. doi: 10.1104/pp.16.00166. Epub 2016 Mar 28. Review.


Opportunities for wheat proteomics to discover the biomarkers for respiration-dependent biomass production, stress tolerance and cytoplasmic male sterility.

Jacoby RP, Millar AH, Taylor NL.

J Proteomics. 2016 Jun 30;143:36-44. doi: 10.1016/j.jprot.2016.02.014. Epub 2016 Feb 23. Review.


Inactivation of Mitochondrial Complex I Induces the Expression of a Twin Cysteine Protein that Targets and Affects Cytosolic, Chloroplastidic and Mitochondrial Function.

Wang Y, Lyu W, Berkowitz O, Radomiljac JD, Law SR, Murcha MW, Carrie C, Teixeira PF, Kmiec B, Duncan O, Van Aken O, Narsai R, Glaser E, Huang S, Roessner U, Millar AH, Whelan J.

Mol Plant. 2016 May 2;9(5):696-710. doi: 10.1016/j.molp.2016.01.009. Epub 2016 Jan 29.


Seminal fluid of honeybees contains multiple mechanisms to combat infections of the sexually transmitted pathogen Nosema apis.

Peng Y, Grassl J, Millar AH, Baer B.

Proc Biol Sci. 2016 Jan 27;283(1823). pii: 20151785. doi: 10.1098/rspb.2015.1785.


Glutaredoxin S15 Is Involved in Fe-S Cluster Transfer in Mitochondria Influencing Lipoic Acid-Dependent Enzymes, Plant Growth, and Arsenic Tolerance in Arabidopsis.

Ströher E, Grassl J, Carrie C, Fenske R, Whelan J, Millar AH.

Plant Physiol. 2016 Mar;170(3):1284-99. doi: 10.1104/pp.15.01308. Epub 2015 Dec 15.


Genetics, Transcriptional Profiles, and Catalytic Properties of the UDP-Arabinose Mutase Family from Barley.

Hsieh YS, Zhang Q, Yap K, Shirley NJ, Lahnstein J, Nelson CJ, Burton RA, Millar AH, Bulone V, Fincher GB.

Biochemistry. 2016 Jan 19;55(2):322-34. doi: 10.1021/acs.biochem.5b01055. Epub 2016 Jan 6.


Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL).

Hooper CM, Castleden IR, Aryamanesh N, Jacoby RP, Millar AH.

Plant Cell Physiol. 2016 Jan;57(1):e9. doi: 10.1093/pcp/pcv170. Epub 2015 Nov 9.


Analysis of the sodium chloride-dependent respiratory kinetics of wheat mitochondria reveals differential effects on phosphorylating and non-phosphorylating electron transport pathways.

Jacoby RP, Che-Othman MH, Millar AH, Taylor NL.

Plant Cell Environ. 2016 Apr;39(4):823-33. doi: 10.1111/pce.12653. Epub 2015 Dec 11.


Proteomics in evolutionary ecology.

Baer B, Millar AH.

J Proteomics. 2016 Mar 1;135:4-11. doi: 10.1016/j.jprot.2015.09.031. Epub 2015 Oct 17. Review.


Consequences of Nosema apis infection for male honey bees and their fertility.

Peng Y, Baer-Imhoof B, Millar AH, Baer B.

Sci Rep. 2015 Jun 30;5:10565. doi: 10.1038/srep10565.


Peptide macrocyclization by a bifunctional endoprotease.

Bernath-Levin K, Nelson C, Elliott AG, Jayasena AS, Millar AH, Craik DJ, Mylne JS.

Chem Biol. 2015 May 21;22(5):571-82. doi: 10.1016/j.chembiol.2015.04.010. Epub 2015 May 7.


Micro-respiratory measurements in plants.

Sew YS, Millar AH, Stroeher E.

Methods Mol Biol. 2015;1305:187-96. doi: 10.1007/978-1-4939-2639-8_13.


Assessment of respiration in isolated plant mitochondria using Clark-type electrodes.

Jacoby RP, Millar AH, Taylor NL.

Methods Mol Biol. 2015;1305:165-85. doi: 10.1007/978-1-4939-2639-8_12.


Activity assay for plant mitochondrial enzymes.

Huang S, Lee CP, Millar AH.

Methods Mol Biol. 2015;1305:139-49. doi: 10.1007/978-1-4939-2639-8_10.


Plant mitochondrial proteomics.

Taylor NL, Millar AH.

Methods Mol Biol. 2015;1305:83-106. doi: 10.1007/978-1-4939-2639-8_6.


INTERMEDIATE CLEAVAGE PEPTIDASE55 Modifies Enzyme Amino Termini and Alters Protein Stability in Arabidopsis Mitochondria.

Huang S, Nelson CJ, Li L, Taylor NL, Ströher E, Peteriet J, Millar AH.

Plant Physiol. 2015 Jun;168(2):415-27. doi: 10.1104/pp.15.00300. Epub 2015 Apr 10.


Exposure of barley plants to low Pi leads to rapid changes in root respiration that correlate with specific alterations in amino acid substrates.

Alexova R, Nelson CJ, Jacoby RP, Millar AH.

New Phytol. 2015 Apr;206(2):696-708. doi: 10.1111/nph.13245. Epub 2014 Dec 31.


Protein turnover in plant biology.

Nelson CJ, Millar AH.

Nat Plants. 2015 Mar 3;1:15017. doi: 10.1038/nplants.2015.17. Review.


Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family.

Tanz SK, Castleden I, Hooper CM, Small I, Millar AH.

Front Plant Sci. 2014 Aug 12;5:396. doi: 10.3389/fpls.2014.00396. eCollection 2014.


SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome.

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH.

Bioinformatics. 2014 Dec 1;30(23):3356-64. doi: 10.1093/bioinformatics/btu550. Epub 2014 Aug 22.


Proteins with high turnover rate in barley leaves estimated by proteome analysis combined with in planta isotope labeling.

Nelson CJ, Alexova R, Jacoby RP, Millar AH.

Plant Physiol. 2014 Sep;166(1):91-108. doi: 10.1104/pp.114.243014. Epub 2014 Jul 31.


Online oxygen kinetic isotope effects using membrane inlet mass spectrometry can differentiate between oxidases for mechanistic studies and calculation of their contributions to oxygen consumption in whole tissues.

Cheah MH, Millar AH, Myers RC, Day DA, Roth J, Hillier W, Badger MR.

Anal Chem. 2014 May 20;86(10):5171-8. doi: 10.1021/ac501086n. Epub 2014 May 1.


Ontogenetic changes in seminal fluid gene expression and the protein composition of cricket seminal fluid.

Simmons LW, Beveridge M, Li L, Tan YF, Millar AH.

Evol Dev. 2014 Mar;16(2):101-9. doi: 10.1111/ede.12068. Erratum in: Evol Dev. 2014 May;16(3):182. Li, Lie [corrected to Li, Lei].


Subcellular proteomics-where cell biology meets protein chemistry.

Millar AH, Taylor NL.

Front Plant Sci. 2014 Feb 26;5:55. doi: 10.3389/fpls.2014.00055. eCollection 2014. No abstract available.


What happens to plant mitochondria under low oxygen? An omics review of the responses to low oxygen and reoxygenation.

Shingaki-Wells R, Millar AH, Whelan J, Narsai R.

Plant Cell Environ. 2014 Oct;37(10):2260-77. doi: 10.1111/pce.12312. Epub 2014 May 11. Review.


Quantifying spore viability of the honey bee pathogen Nosema apis using flow cytometry.

Peng Y, Lee-Pullen TF, Heel K, Millar AH, Baer B.

Cytometry A. 2014 May;85(5):454-62. doi: 10.1002/cyto.a.22428. Epub 2013 Dec 12.

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