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High-Resolution Analysis of the Efficiency, Heritability, and Editing Outcomes of CRISPR/Cas9-Induced Modifications of NCED4 in Lettuce (Lactuca sativa).

Bertier LD, Ron M, Huo H, Bradford KJ, Michelmore RW.

G3 (Bethesda). 2018 Mar 6. pii: g3.300396.2017. doi: 10.1534/g3.117.300396. [Epub ahead of print]


RNA sequencing provides insights into the evolution of lettuce and the regulation of flavonoid biosynthesis.

Zhang L, Su W, Tao R, Zhang W, Chen J, Wu P, Yan C, Jia Y, Larkin RM, Lavelle D, Truco MJ, Chin-Wo SR, Michelmore RW, Kuang H.

Nat Commun. 2017 Dec 22;8(1):2264. doi: 10.1038/s41467-017-02445-9.


Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.

Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO, Truco MJ, Xia R, Zhu S, Xu C, Xu H, Xu X, Cox K, Korf I, Meyers BC, Michelmore RW.

Nat Commun. 2017 Apr 12;8:14953. doi: 10.1038/ncomms14953.


Detection and Quantification of Bremia lactucae by Spore Trapping and Quantitative PCR.

Kunjeti SG, Anchieta A, Martin FN, Choi YJ, Thines M, Michelmore RW, Koike ST, Tsuchida C, Mahaffee W, Subbarao KV, Klosterman SJ.

Phytopathology. 2016 Nov;106(11):1426-1437. Epub 2016 Aug 29.


Elucidating the genetic basis of antioxidant status in lettuce (Lactuca sativa).

Damerum A, Selmes SL, Biggi GF, Clarkson GJ, Rothwell SD, Truco MJ, Michelmore RW, Hancock RD, Shellcock C, Chapman MA, Taylor G.

Hortic Res. 2015 Nov 25;2:15055. doi: 10.1038/hortres.2015.55. eCollection 2015.


Perception of bitterness, sweetness and liking of different genotypes of lettuce.

Chadwick M, Gawthrop F, Michelmore RW, Wagstaff C, Methven L.

Food Chem. 2016 Apr 15;197(Pt A):66-74. doi: 10.1016/j.foodchem.2015.10.105. Epub 2015 Oct 23.


Acetylation of an NB-LRR Plant Immune-Effector Complex Suppresses Immunity.

Lee J, Manning AJ, Wolfgeher D, Jelenska J, Cavanaugh KA, Xu H, Fernandez SM, Michelmore RW, Kron SJ, Greenberg JT.

Cell Rep. 2015 Nov 24;13(8):1670-82. doi: 10.1016/j.celrep.2015.10.029. Epub 2015 Nov 12.


Genetic Variation for Thermotolerance in Lettuce Seed Germination Is Associated with Temperature-Sensitive Regulation of ETHYLENE RESPONSE FACTOR1 (ERF1).

Yoong FY, O'Brien LK, Truco MJ, Huo H, Sideman R, Hayes R, Michelmore RW, Bradford KJ.

Plant Physiol. 2016 Jan;170(1):472-88. doi: 10.1104/pp.15.01251. Epub 2015 Nov 16.


Genome-Wide Architecture of Disease Resistance Genes in Lettuce.

Christopoulou M, Wo SR, Kozik A, McHale LK, Truco MJ, Wroblewski T, Michelmore RW.

G3 (Bethesda). 2015 Oct 8;5(12):2655-69. doi: 10.1534/g3.115.020818. Erratum in: G3 (Bethesda). 2016 Mar;6(3):773.


Resistance to Downy Mildew in Lettuce 'La Brillante' is Conferred by Dm50 Gene and Multiple QTL.

Simko I, Ochoa OE, Pel MA, Tsuchida C, Font I Forcada C, Hayes RJ, Truco MJ, Antonise R, Galeano CH, Michelmore RW.

Phytopathology. 2015 Sep;105(9):1220-8. doi: 10.1094/PHYTO-02-15-0057-R. Epub 2015 Aug 24.


Wheat rusts never sleep but neither do sequencers: will pathogenomics transform the way plant diseases are managed?

Derevnina L, Michelmore RW.

Genome Biol. 2015 Mar 2;16:44. doi: 10.1186/s13059-015-0615-3.


Dissection of Two Complex Clusters of Resistance Genes in Lettuce (Lactuca sativa).

Christopoulou M, McHale LK, Kozik A, Reyes-Chin Wo S, Wroblewski T, Michelmore RW.

Mol Plant Microbe Interact. 2015 Jul;28(7):751-65. doi: 10.1094/MPMI-06-14-0175-R. Epub 2015 Jul 9.


Host-induced gene silencing inhibits the biotrophic pathogen causing downy mildew of lettuce.

Govindarajulu M, Epstein L, Wroblewski T, Michelmore RW.

Plant Biotechnol J. 2015 Sep;13(7):875-83. doi: 10.1111/pbi.12307. Epub 2014 Dec 9.


Abiotic stress QTL in lettuce crop-wild hybrids: comparing greenhouse and field experiments.

Hartman Y, Hooftman DA, Uwimana B, Schranz ME, van de Wiel CC, Smulders MJ, Visser RG, Michelmore RW, van Tienderen PH.

Ecol Evol. 2014 Jun;4(12):2395-409. doi: 10.1002/ece3.1060. Epub 2014 May 17.


Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis.

Wroblewski T, Matvienko M, Piskurewicz U, Xu H, Martineau B, Wong J, Govindarajulu M, Kozik A, Michelmore RW.

RNA. 2014 Dec;20(12):1987-99. doi: 10.1261/rna.046532.114. Epub 2014 Oct 24.


A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.

Mandel JR, Dikow RB, Funk VA, Masalia RR, Staton SE, Kozik A, Michelmore RW, Rieseberg LH, Burke JM.

Appl Plant Sci. 2014 Feb 6;2(2). pii: apps.1300085. doi: 10.3732/apps.1300085. eCollection 2014 Feb.


Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products.

Beitel CW, Froenicke L, Lang JM, Korf IF, Michelmore RW, Eisen JA, Darling AE.

PeerJ. 2014 May 27;2:e415. doi: 10.7717/peerj.415. eCollection 2014.


Genetic analysis of safflower domestication.

Pearl SA, Bowers JE, Reyes-Chin-Wo S, Michelmore RW, Burke JM.

BMC Plant Biol. 2014 Feb 6;14:43. doi: 10.1186/1471-2229-14-43.


The inheritance of resistance to bacterial leaf spot of lettuce caused by Xanthomonas campestris pv. vitians in three lettuce cultivars.

Hayes RJ, Trent MA, Truco MJ, Antonise R, Michelmore RW, Bull CT.

Hortic Res. 2014 Dec 24;1:14066. doi: 10.1038/hortres.2014.66. eCollection 2014.


Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives.

Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.

Mol Ecol Resour. 2014 Jan;14(1):166-77. doi: 10.1111/1755-0998.12163. Epub 2013 Sep 18.


Identification of QTLs conferring resistance to downy mildew in legacy cultivars of lettuce.

Simko I, Atallah AJ, Ochoa OE, Antonise R, Galeano CH, Truco MJ, Michelmore RW.

Sci Rep. 2013 Oct 7;3:2875. doi: 10.1038/srep02875.


Quantitative trait loci associated with tipburn, heat stress-induced physiological disorders, and maturity traits in crisphead lettuce.

Jenni S, Truco MJ, Michelmore RW.

Theor Appl Genet. 2013 Sep 28. [Epub ahead of print]


An intra-specific linkage map of lettuce (Lactuca sativa) and genetic analysis of postharvest discolouration traits.

Atkinson LD, McHale LK, Truco MJ, Hilton HW, Lynn J, Schut JW, Michelmore RW, Hand P, Pink DA.

Theor Appl Genet. 2013 Nov;126(11):2737-52.


The role of TIR-NBS and TIR-X proteins in plant basal defense responses.

Nandety RS, Caplan JL, Cavanaugh K, Perroud B, Wroblewski T, Michelmore RW, Meyers BC.

Plant Physiol. 2013 Jul;162(3):1459-72. doi: 10.1104/pp.113.219162. Epub 2013 Jun 4.


Impacts of resistance gene genetics, function, and evolution on a durable future.

Michelmore RW, Christopoulou M, Caldwell KS.

Annu Rev Phytopathol. 2013;51:291-319. doi: 10.1146/annurev-phyto-082712-102334. Epub 2013 May 15. Review.


An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce.

Truco MJ, Ashrafi H, Kozik A, van Leeuwen H, Bowers J, Wo SR, Stoffel K, Xu H, Hill T, Van Deynze A, Michelmore RW.

G3 (Bethesda). 2013 Apr 9;3(4):617-631. doi: 10.1534/g3.112.004929.


RNAseq-based transcriptome analysis of Lactuca sativa infected by the fungal necrotroph Botrytis cinerea.

De Cremer K, Mathys J, Vos C, Froenicke L, Michelmore RW, Cammue BP, De Coninck B.

Plant Cell Environ. 2013 Nov;36(11):1992-2007. doi: 10.1111/pce.12106. Epub 2013 Apr 26.


Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip.

Hill TA, Ashrafi H, Reyes-Chin-Wo S, Yao J, Stoffel K, Truco MJ, Kozik A, Michelmore RW, Van Deynze A.

PLoS One. 2013;8(2):e56200. doi: 10.1371/journal.pone.0056200. Epub 2013 Feb 8.


Hybridization between crops and wild relatives: the contribution of cultivated lettuce to the vigour of crop-wild hybrids under drought, salinity and nutrient deficiency conditions.

Uwimana B, Smulders MJ, Hooftman DA, Hartman Y, van Tienderen PH, Jansen J, McHale LK, Michelmore RW, van de Wiel CC, Visser RG.

Theor Appl Genet. 2012 Oct;125(6):1097-111. doi: 10.1007/s00122-012-1897-4. Epub 2012 Jun 4.


Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.).

Stoffel K, van Leeuwen H, Kozik A, Caldwell D, Ashrafi H, Cui X, Tan X, Hill T, Reyes-Chin-Wo S, Truco MJ, Michelmore RW, Van Deynze A.

BMC Genomics. 2012 May 14;13:185. doi: 10.1186/1471-2164-13-185.


Crop to wild introgression in lettuce: following the fate of crop genome segments in backcross populations.

Uwimana B, Smulders MJ, Hooftman DA, Hartman Y, van Tienderen PH, Jansen J, McHale LK, Michelmore RW, Visser RG, van de Wiel CC.

BMC Plant Biol. 2012 Mar 26;12:43. doi: 10.1186/1471-2229-12-43.


Type III secretion and effectors shape the survival and growth pattern of Pseudomonas syringae on leaf surfaces.

Lee J, Teitzel GM, Munkvold K, del Pozo O, Martin GB, Michelmore RW, Greenberg JT.

Plant Physiol. 2012 Apr;158(4):1803-18. doi: 10.1104/pp.111.190686. Epub 2012 Feb 7.


Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression.

Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, Anderson JV, Horvath DP, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.

Am J Bot. 2012 Feb;99(2):209-18. doi: 10.3732/ajb.1100313. Epub 2011 Nov 4.


Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.

Cantu D, Govindarajulu M, Kozik A, Wang M, Chen X, Kojima KK, Jurka J, Michelmore RW, Dubcovsky J.

PLoS One. 2011;6(8):e24230. doi: 10.1371/journal.pone.0024230. Epub 2011 Aug 31.


The inheritance of resistance to Verticillium wilt caused by race 1 isolates of Verticillium dahliae in the lettuce cultivar La Brillante.

Hayes RJ, McHale LK, Vallad GE, Truco MJ, Michelmore RW, Klosterman SJ, Maruthachalam K, Subbarao KV.

Theor Appl Genet. 2011 Aug;123(4):509-17. doi: 10.1007/s00122-011-1603-y. Epub 2011 May 13.


A gene encoding an abscisic acid biosynthetic enzyme (LsNCED4) collocates with the high temperature germination locus Htg6.1 in lettuce (Lactuca sp.).

Argyris J, Truco MJ, Ochoa O, McHale L, Dahal P, Van Deynze A, Michelmore RW, Bradford KJ.

Theor Appl Genet. 2011 Jan;122(1):95-108. doi: 10.1007/s00122-010-1425-3. Epub 2010 Aug 12.


Small RNAs, DNA methylation and transposable elements in wheat.

Cantu D, Vanzetti LS, Sumner A, Dubcovsky M, Matvienko M, Distelfeld A, Michelmore RW, Dubcovsky J.

BMC Genomics. 2010 Jun 29;11:408. doi: 10.1186/1471-2164-11-408.


Association mapping and marker-assisted selection of the lettuce dieback resistance gene Tvr1.

Simko I, Pechenick DA, McHale LK, Truco MJ, Ochoa OE, Michelmore RW, Scheffler BE.

BMC Plant Biol. 2009 Nov 23;9:135. doi: 10.1186/1471-2229-9-135.


Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid.

Jeuken MJ, Zhang NW, McHale LK, Pelgrom K, den Boer E, Lindhout P, Michelmore RW, Visser RG, Niks RE.

Plant Cell. 2009 Oct;21(10):3368-78. doi: 10.1105/tpc.109.070334. Epub 2009 Oct 23.


Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci.

Ferrante P, Clarke CR, Cavanaugh KA, Michelmore RW, Buonaurio R, Vinatzer BA.

Mol Plant Pathol. 2009 Nov;10(6):837-42. doi: 10.1111/j.1364-3703.2009.00577.x.


Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.).

Chapman MA, Hvala J, Strever J, Matvienko M, Kozik A, Michelmore RW, Tang S, Knapp SJ, Burke JM.

Theor Appl Genet. 2009 Dec;120(1):85-91. doi: 10.1007/s00122-009-1161-8. Epub 2009 Oct 10.


Proteolysis of a negative regulator of innate immunity is dependent on resistance genes in tomato and Nicotiana benthamiana and induced by multiple bacterial effectors.

Luo Y, Caldwell KS, Wroblewski T, Wright ME, Michelmore RW.

Plant Cell. 2009 Aug;21(8):2458-72. doi: 10.1105/tpc.107.056044. Epub 2009 Aug 11.


Comparative large-scale analysis of interactions between several crop species and the effector repertoires from multiple pathovars of Pseudomonas and Ralstonia.

Wroblewski T, Caldwell KS, Piskurewicz U, Cavanaugh KA, Xu H, Kozik A, Ochoa O, McHale LK, Lahre K, Jelenska J, Castillo JA, Blumenthal D, Vinatzer BA, Greenberg JT, Michelmore RW.

Plant Physiol. 2009 Aug;150(4):1733-49. doi: 10.1104/pp.109.140251. Epub 2009 Jul 1.


Arabidopsis thaliana genes encoding defense signaling and recognition proteins exhibit contrasting evolutionary dynamics.

Caldwell KS, Michelmore RW.

Genetics. 2009 Feb;181(2):671-84. doi: 10.1534/genetics.108.097279. Epub 2008 Dec 8.


The genomic architecture of disease resistance in lettuce.

McHale LK, Truco MJ, Kozik A, Wroblewski T, Ochoa OE, Lahre KA, Knapp SJ, Michelmore RW.

Theor Appl Genet. 2009 Feb;118(3):565-80. doi: 10.1007/s00122-008-0921-1. Epub 2008 Nov 13. Erratum in: Theor Appl Genet.2009 Apr;118(6):1223-4.


Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years.

Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH.

Mol Biol Evol. 2008 Nov;25(11):2445-55. doi: 10.1093/molbev/msn187. Epub 2008 Aug 26.


Transgene-induced gene silencing is not affected by a change in ploidy level.

Pignatta D, Dilkes B, Wroblewski T, Michelmore RW, Comai L.

PLoS One. 2008 Aug 26;3(8):e3061. doi: 10.1371/journal.pone.0003061.


Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower.

Radwan O, Gandhi S, Heesacker A, Whitaker B, Taylor C, Plocik A, Kesseli R, Kozik A, Michelmore RW, Knapp SJ.

Mol Genet Genomics. 2008 Aug;280(2):111-25. doi: 10.1007/s00438-008-0346-1. Epub 2008 Jun 14.


Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions.

Adams-Phillips L, Wan J, Tan X, Dunning FM, Meyers BC, Michelmore RW, Bent AF.

Mol Plant Microbe Interact. 2008 May;21(5):646-57. doi: 10.1094/MPMI-21-5-0646.

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