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Items: 16

1.

Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions.

Wallqvist A, Wang H, Zavaljevski N, Memišević V, Kwon K, Pieper R, Rajagopala SV, Reifman J.

PLoS One. 2017 Nov 27;12(11):e0188071. doi: 10.1371/journal.pone.0188071. eCollection 2017. Erratum in: PLoS One. 2018 Apr 20;13(4):e0196373.

2.

DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems.

Memišević V, Kumar K, Zavaljevski N, DeShazer D, Wallqvist A, Reifman J.

BMC Bioinformatics. 2016 Sep 20;17:387. doi: 10.1186/s12859-016-1242-z.

3.

Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors.

Wallqvist A, Memišević V, Zavaljevski N, Pieper R, Rajagopala SV, Kwon K, Yu C, Hoover TA, Reifman J.

BMC Genomics. 2015 Dec 29;16:1106. doi: 10.1186/s12864-015-2351-1.

4.

A reverse-phase protein microarray-based screen identifies host signaling dynamics upon Burkholderia spp. infection.

Chiang CY, Uzoma I, Lane DJ, Memišević V, Alem F, Yao K, Kota KP, Bavari S, Wallqvist A, Hakami RM, Panchal RG.

Front Microbiol. 2015 Jul 27;6:683. doi: 10.3389/fmicb.2015.00683. eCollection 2015.

5.

Mining host-pathogen protein interactions to characterize Burkholderia mallei infectivity mechanisms.

Memišević V, Zavaljevski N, Rajagopala SV, Kwon K, Pieper R, DeShazer D, Reifman J, Wallqvist A.

PLoS Comput Biol. 2015 Mar 4;11(3):e1004088. doi: 10.1371/journal.pcbi.1004088. eCollection 2015 Mar.

6.

DBSecSys: a database of Burkholderia mallei secretion systems.

Memišević V, Kumar K, Cheng L, Zavaljevski N, DeShazer D, Wallqvist A, Reifman J.

BMC Bioinformatics. 2014 Jul 16;15:244. doi: 10.1186/1471-2105-15-244.

7.

Novel Burkholderia mallei virulence factors linked to specific host-pathogen protein interactions.

Memisević V, Zavaljevski N, Pieper R, Rajagopala SV, Kwon K, Townsend K, Yu C, Yu X, DeShazer D, Reifman J, Wallqvist A.

Mol Cell Proteomics. 2013 Nov;12(11):3036-51. doi: 10.1074/mcp.M113.029041. Epub 2013 Jun 24.

8.

Reconstituting protein interaction networks using parameter-dependent domain-domain interactions.

Memišević V, Wallqvist A, Reifman J.

BMC Bioinformatics. 2013 May 7;14:154. doi: 10.1186/1471-2105-14-154.

9.

C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks.

Memišević V, Pržulj N.

Integr Biol (Camb). 2012 Jul;4(7):734-43. doi: 10.1039/c2ib00140c. Epub 2012 Jan 10.

PMID:
22234340
10.

Dominating biological networks.

Milenković T, Memišević V, Bonato A, Pržulj N.

PLoS One. 2011;6(8):e23016. doi: 10.1371/journal.pone.0023016. Epub 2011 Aug 26.

11.

Categorizing biases in high-confidence high-throughput protein-protein interaction data sets.

Yu X, Ivanic J, Memisević V, Wallqvist A, Reifman J.

Mol Cell Proteomics. 2011 Dec;10(12):M111.012500. doi: 10.1074/mcp.M111.012500. Epub 2011 Aug 29.

12.

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets.

Ho H, Milenković T, Memisević V, Aruri J, Przulj N, Ganesan AK.

BMC Syst Biol. 2010 Jun 15;4:84. doi: 10.1186/1752-0509-4-84.

13.

An integrative approach to modeling biological networks.

Memisevic V, Milenkovic T, Przulj N.

J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-120.

PMID:
20375453
14.

Complementarity of network and sequence information in homologous proteins.

Memisevic V, Milenkovic T, Przulj N.

J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-135.

PMID:
20375452
15.

Topological network alignment uncovers biological function and phylogeny.

Kuchaiev O, Milenkovic T, Memisevic V, Hayes W, Przulj N.

J R Soc Interface. 2010 Sep 6;7(50):1341-54. doi: 10.1098/rsif.2010.0063. Epub 2010 Mar 17.

16.

Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data.

Milenkovic T, Memisevic V, Ganesan AK, Przulj N.

J R Soc Interface. 2010 Mar 6;7(44):423-37. doi: 10.1098/rsif.2009.0192. Epub 2009 Jul 22.

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