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Items: 1 to 50 of 84

1.

CRISPR/Cas9-mediated genome editing in a reef-building coral.

Cleves PA, Strader ME, Bay LK, Pringle JR, Matz MV.

Proc Natl Acad Sci U S A. 2018 May 15;115(20):5235-5240. doi: 10.1073/pnas.1722151115. Epub 2018 Apr 25.

PMID:
29695630
2.

Potential and limits for rapid genetic adaptation to warming in a Great Barrier Reef coral.

Matz MV, Treml EA, Aglyamova GV, Bay LK.

PLoS Genet. 2018 Apr 19;14(4):e1007220. doi: 10.1371/journal.pgen.1007220. eCollection 2018 Apr.

3.

Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral.

Strader ME, Aglyamova GV, Matz MV.

BMC Genomics. 2018 Jan 4;19(1):17. doi: 10.1186/s12864-017-4392-0.

4.

Complex selection on a regulator of social cognition: Evidence of balancing selection, regulatory interactions and population differentiation in the prairie vole Avpr1a locus.

Berrio A, Guerrero RF, Aglyamova GV, Okhovat M, Matz MV, Phelps SM.

Mol Ecol. 2018 Jan;27(2):419-431. doi: 10.1111/mec.14455. Epub 2017 Dec 29.

PMID:
29218792
5.

Fantastic Beasts and How To Sequence Them: Ecological Genomics for Obscure Model Organisms.

Matz MV.

Trends Genet. 2017 Nov 29. pii: S0168-9525(17)30202-0. doi: 10.1016/j.tig.2017.11.002. [Epub ahead of print] Review.

PMID:
29198378
6.

Population structure and connectivity of the mountainous star coral, Orbicella faveolata, throughout the wider Caribbean region.

Rippe JP, Matz MV, Green EA, Medina M, Khawaja NZ, Pongwarin T, Pinzón C JH, Castillo KD, Davies SW.

Ecol Evol. 2017 Oct 3;7(22):9234-9246. doi: 10.1002/ece3.3448. eCollection 2017 Nov.

7.

Coral larvae for restoration and research: a large-scale method for rearing Acropora millepora larvae, inducing settlement, and establishing symbiosis.

Pollock FJ, Katz SM, van de Water JAJM, Davies SW, Hein M, Torda G, Matz MV, Beltran VH, Buerger P, Puill-Stephan E, Abrego D, Bourne DG, Willis BL.

PeerJ. 2017 Sep 6;5:e3732. doi: 10.7717/peerj.3732. eCollection 2017.

8.

Gene expression plasticity as a mechanism of coral adaptation to a variable environment.

Kenkel CD, Matz MV.

Nat Ecol Evol. 2016 Nov 7;1(1):14. doi: 10.1038/s41559-016-0014.

PMID:
28812568
9.

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora.

Wright RM, Kenkel CD, Dunn CE, Shilling EN, Bay LK, Matz MV.

Sci Rep. 2017 Jun 1;7(1):2609. doi: 10.1038/s41598-017-02685-1.

10.

Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral.

Oldach MJ, Workentine M, Matz MV, Fan TY, Vize PD.

Mol Ecol. 2017 May;26(9):2514-2526. doi: 10.1111/mec.14043. Epub 2017 Feb 23.

PMID:
28141890
11.

Evolutionary Consequences of DNA Methylation in a Basal Metazoan.

Dixon GB, Bay LK, Matz MV.

Mol Biol Evol. 2016 Sep;33(9):2285-93. doi: 10.1093/molbev/msw100. Epub 2016 May 14.

12.
13.

Evolutionary origins of germline segregation in Metazoa: evidence for a germ stem cell lineage in the coral Orbicella faveolata (Cnidaria, Anthozoa).

Barfield S, Aglyamova GV, Matz MV.

Proc Biol Sci. 2016 Jan 13;283(1822). pii: 20152128. doi: 10.1098/rspb.2015.2128.

14.

Red fluorescence in coral larvae is associated with a diapause-like state.

Strader ME, Aglyamova GV, Matz MV.

Mol Ecol. 2016 Jan;25(2):559-69. doi: 10.1111/mec.13488. Epub 2016 Jan 19.

PMID:
26600127
15.

Differential responses of coral larvae to the colour of ambient light guide them to suitable settlement microhabitat.

Strader ME, Davies SW, Matz MV.

R Soc Open Sci. 2015 Oct 7;2(10):150358. doi: 10.1098/rsos.150358. eCollection 2015 Oct.

16.

Estimating Trait Heritability in Highly Fecund Species.

Davies SW, Scarpino SV, Pongwarin T, Scott J, Matz MV.

G3 (Bethesda). 2015 Oct 4;5(12):2639-45. doi: 10.1534/g3.115.020701.

17.

CORAL REEFS. Genomic determinants of coral heat tolerance across latitudes.

Dixon GB, Davies SW, Aglyamova GA, Meyer E, Bay LK, Matz MV.

Science. 2015 Jun 26;348(6242):1460-2. doi: 10.1126/science.1261224.

PMID:
26113720
18.

Heritable differences in fitness-related traits among populations of the mustard hill coral, Porites astreoides.

Kenkel CD, Setta SP, Matz MV.

Heredity (Edinb). 2015 Dec;115(6):509-16. doi: 10.1038/hdy.2015.52. Epub 2015 Jun 17.

19.

Quantitative high resolution melting: two methods to determine SNP allele frequencies from pooled samples.

Capper RL, Jin YK, Lundgren PB, Peplow LM, Matz MV, van Oppen MJ.

BMC Genet. 2015 Jun 13;16:62. doi: 10.1186/s12863-015-0222-z.

20.

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus.

Wright RM, Aglyamova GV, Meyer E, Matz MV.

BMC Genomics. 2015 May 9;16:371. doi: 10.1186/s12864-015-1540-2.

21.

A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins.

Kim H, Zou T, Modi C, Dörner K, Grunkemeyer TJ, Chen L, Fromme R, Matz MV, Ozkan SB, Wachter RM.

Structure. 2015 Jan 6;23(1):34-43. doi: 10.1016/j.str.2014.11.011.

22.

Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora.

Dixon GB, Bay LK, Matz MV.

BMC Genomics. 2014 Dec 15;15:1109. doi: 10.1186/1471-2164-15-1109.

23.

Exploring the role of Micronesian islands in the maintenance of coral genetic diversity in the Pacific Ocean.

Davies SW, Treml EA, Kenkel CD, Matz MV.

Mol Ecol. 2015 Jan;24(1):70-82. doi: 10.1111/mec.13005. Epub 2014 Dec 13.

PMID:
25407355
24.

Demystifying the RAD fad.

Puritz JB, Matz MV, Toonen RJ, Weber JN, Bolnick DI, Bird CE.

Mol Ecol. 2014 Dec;23(24):5937-42. doi: 10.1111/mec.12965.

PMID:
25319241
25.

Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico.

Green EA, Davies SW, Matz MV, Medina M.

PeerJ. 2014 May 13;2:e386. doi: 10.7717/peerj.386. eCollection 2014.

26.

A cross-ocean comparison of responses to settlement cues in reef-building corals.

Davies SW, Meyer E, Guermond SM, Matz MV.

PeerJ. 2014 Apr 8;2:e333. doi: 10.7717/peerj.333. eCollection 2014.

27.

Deep-sequencing method for quantifying background abundances of symbiodinium types: exploring the rare symbiodinium biosphere in reef-building corals.

Quigley KM, Davies SW, Kenkel CD, Willis BL, Matz MV, Bay LK.

PLoS One. 2014 Apr 11;9(4):e94297. doi: 10.1371/journal.pone.0094297. eCollection 2014.

28.

Diagnostic gene expression biomarkers of coral thermal stress.

Kenkel CD, Sheridan C, Leal MC, Bhagooli R, Castillo KD, Kurata N, McGinty E, Goulet TL, Matz MV.

Mol Ecol Resour. 2014 Jul;14(4):667-78. doi: 10.1111/1755-0998.12218. Epub 2014 Jan 10.

PMID:
24354729
29.

Acid-base catalysis and crystal structures of a least evolved ancestral GFP-like protein undergoing green-to-red photoconversion.

Kim H, Grunkemeyer TJ, Modi C, Chen L, Fromme R, Matz MV, Wachter RM.

Biochemistry. 2013 Nov 12;52(45):8048-59. doi: 10.1021/bi401000e. Epub 2013 Nov 1.

PMID:
24134825
30.
31.

No control genes required: Bayesian analysis of qRT-PCR data.

Matz MV, Wright RM, Scott JG.

PLoS One. 2013 Aug 19;8(8):e71448. doi: 10.1371/journal.pone.0071448. eCollection 2013.

32.

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides) from different reef environments.

Kenkel CD, Goodbody-Gringley G, Caillaud D, Davies SW, Bartels E, Matz MV.

Mol Ecol. 2013 Aug;22(16):4335-4348. doi: 10.1111/mec.12391. Epub 2013 Jul 30.

PMID:
23906315
33.

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides) from different thermal environments.

Kenkel CD, Meyer E, Matz MV.

Mol Ecol. 2013 Aug;22(16):4322-4334. doi: 10.1111/mec.12390. Epub 2013 Jul 30.

PMID:
23899402
34.

Gene expression signatures of energetic acclimatisation in the reef building coral Acropora millepora.

Bay LK, Guérécheau A, Andreakis N, Ulstrup KE, Matz MV.

PLoS One. 2013 May 9;8(5):e61736. doi: 10.1371/journal.pone.0061736. Print 2013.

35.

Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria.

Sierra R, Matz MV, Aglyamova G, Pillet L, Decelle J, Not F, de Vargas C, Pawlowski J.

Mol Phylogenet Evol. 2013 Apr;67(1):53-9. doi: 10.1016/j.ympev.2012.12.011. Epub 2012 Dec 29.

PMID:
23280368
36.

2b-RAD: a simple and flexible method for genome-wide genotyping.

Wang S, Meyer E, McKay JK, Matz MV.

Nat Methods. 2012 May 20;9(8):808-10. doi: 10.1038/nmeth.2023.

PMID:
22609625
37.

Multi-domain GFP-like proteins from two species of marine hydrozoans.

Hunt ME, Modi CK, Aglyamova GV, Ravikant DV, Meyer E, Matz MV.

Photochem Photobiol Sci. 2012 Apr;11(4):637-44. doi: 10.1039/c1pp05238a. Epub 2012 Jan 18.

PMID:
22251928
38.

Development of gene expression markers of acute heat-light stress in reef-building corals of the genus Porites.

Kenkel CD, Aglyamova G, Alamaru A, Bhagooli R, Capper R, Cunning R, deVillers A, Haslun JA, Hédouin L, Keshavmurthy S, Kuehl KA, Mahmoud H, McGinty ES, Montoya-Maya PH, Palmer CV, Pantile R, Sánchez JA, Schils T, Silverstein RN, Squiers LB, Tang PC, Goulet TL, Matz MV.

PLoS One. 2011;6(10):e26914. doi: 10.1371/journal.pone.0026914. Epub 2011 Oct 26.

39.

Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure.

Meyer E, Aglyamova GV, Matz MV.

Mol Ecol. 2011 Sep;20(17):3599-616. doi: 10.1111/j.1365-294X.2011.05205.x. Epub 2011 Jul 29.

PMID:
21801258
40.

Rapid evolution of coral proteins responsible for interaction with the environment.

Voolstra CR, Sunagawa S, Matz MV, Bayer T, Aranda M, Buschiazzo E, Desalvo MK, Lindquist E, Szmant AM, Coffroth MA, Medina M.

PLoS One. 2011;6(5):e20392. doi: 10.1371/journal.pone.0020392. Epub 2011 May 25.

41.

Multi-colored homologs of the green fluorescent protein from hydromedusa Obelia sp.

Aglyamova GV, Hunt ME, Modi CK, Matz MV.

Photochem Photobiol Sci. 2011 Aug;10(8):1303-9. doi: 10.1039/c1pp05068k. Epub 2011 May 26.

PMID:
21614405
42.

Fluorescence of coral larvae predicts their settlement response to crustose coralline algae and reflects stress.

Kenkel CD, Traylor MR, Wiedenmann J, Salih A, Matz MV.

Proc Biol Sci. 2011 Sep 7;278(1718):2691-7. doi: 10.1098/rspb.2010.2344. Epub 2011 Jan 26.

43.

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists.

Burki F, Kudryavtsev A, Matz MV, Aglyamova GV, Bulman S, Fiers M, Keeling PJ, Pawlowski J.

BMC Evol Biol. 2010 Dec 2;10:377. doi: 10.1186/1471-2148-10-377.

44.

Fluorescent proteins and their applications in imaging living cells and tissues.

Chudakov DM, Matz MV, Lukyanov S, Lukyanov KA.

Physiol Rev. 2010 Jul;90(3):1103-63. doi: 10.1152/physrev.00038.2009. Review.

45.

Very bright green fluorescent proteins from the Pontellid copepod Pontella mimocerami.

Hunt ME, Scherrer MP, Ferrari FD, Matz MV.

PLoS One. 2010 Jul 14;5(7):e11517. doi: 10.1371/journal.pone.0011517.

46.

Characterization of a group of MITEs with unusual features from two coral genomes.

Wang S, Zhang L, Meyer E, Matz MV.

PLoS One. 2010 May 18;5(5):e10700. doi: 10.1371/journal.pone.0010700.

47.

Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora.

Wang S, Zhang L, Meyer E, Matz MV.

Genome Biol. 2009;10(11):R126. doi: 10.1186/gb-2009-10-11-r126. Epub 2009 Nov 10.

48.

Retracing evolution of red fluorescence in GFP-like proteins from Faviina corals.

Field SF, Matz MV.

Mol Biol Evol. 2010 Feb;27(2):225-33. doi: 10.1093/molbev/msp230. Epub 2009 Sep 30.

49.

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx.

Meyer E, Aglyamova GV, Wang S, Buchanan-Carter J, Abrego D, Colbourne JK, Willis BL, Matz MV.

BMC Genomics. 2009 May 12;10:219. doi: 10.1186/1471-2164-10-219.

50.

Giant deep-sea protist produces bilaterian-like traces.

Matz MV, Frank TM, Marshall NJ, Widder EA, Johnsen S.

Curr Biol. 2008 Dec 9;18(23):1849-54. doi: 10.1016/j.cub.2008.10.028. Epub 2008 Nov 20.

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