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Items: 1 to 50 of 130

1.

Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis.

Borges F, Parent JS, van Ex F, Wolff P, Martínez G, Köhler C, Martienssen RA.

Nat Genet. 2018 Feb;50(2):186-192. doi: 10.1038/s41588-017-0032-5. Epub 2018 Jan 15.

PMID:
29335544
2.

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J.

Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.

3.

Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips.

Wear EE, Song J, Zynda GJ, LeBlanc C, Lee TJ, Mickelson-Young L, Concia L, Mulvaney P, Szymanski ES, Allen GC, Martienssen RA, Vaughn MW, Hanley-Bowdoin L, Thompson WF.

Plant Cell. 2017 Sep;29(9):2126-2149. doi: 10.1105/tpc.17.00037. Epub 2017 Aug 25.

4.

The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly.

Chang AY, Castel SE, Ernst E, Kim HS, Martienssen RA.

Cell Rep. 2017 Jun 20;19(12):2477-2489. doi: 10.1016/j.celrep.2017.05.086.

5.

Genetic and epigenetic variation of transposable elements in Arabidopsis.

Underwood CJ, Henderson IR, Martienssen RA.

Curr Opin Plant Biol. 2017 Apr;36:135-141. doi: 10.1016/j.pbi.2017.03.002. Epub 2017 Mar 23. Review.

PMID:
28343122
6.

Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination.

Ziolkowski PA, Underwood CJ, Lambing C, Martinez-Garcia M, Lawrence EJ, Ziolkowska L, Griffin C, Choi K, Franklin FC, Martienssen RA, Henderson IR.

Genes Dev. 2017 Feb 1;31(3):306-317. doi: 10.1101/gad.295501.116. Epub 2017 Feb 21.

7.

Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM.

Ingouff M, Selles B, Michaud C, Vu TM, Berger F, Schorn AJ, Autran D, Van Durme M, Nowack MK, Martienssen RA, Grimanelli D.

Genes Dev. 2017 Jan 1;31(1):72-83. doi: 10.1101/gad.289397.116. Epub 2017 Jan 23.

8.

RNA interference is essential for cellular quiescence.

Roche B, Arcangioli B, Martienssen RA.

Science. 2016 Nov 11;354(6313). pii: aah5651. Epub 2016 Oct 13.

PMID:
27738016
9.

Dicer in action at replication-transcription collisions.

Ren J, Castel SE, Martienssen RA.

Mol Cell Oncol. 2015 Mar 9;2(3):e991224. doi: 10.4161/23723556.2014.991224. eCollection 2015 Jul-Sep.

10.

The Arabidopsis thaliana mobilome and its impact at the species level.

Quadrana L, Bortolini Silveira A, Mayhew GF, LeBlanc C, Martienssen RA, Jeddeloh JA, Colot V.

Elife. 2016 Jun 3;5. pii: e15716. doi: 10.7554/eLife.15716.

11.

A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe.

Pichugina T, Sugawara T, Kaykov A, Schierding W, Masuda K, Uewaki J, Grand RS, Allison JR, Martienssen RA, Nurse P, Ueno M, O'Sullivan JM.

Sci Rep. 2016 Jan 5;6:18757. doi: 10.1038/srep18757.

12.

The expanding world of small RNAs in plants.

Borges F, Martienssen RA.

Nat Rev Mol Cell Biol. 2015 Dec;16(12):727-41. doi: 10.1038/nrm4085. Epub 2015 Nov 4. Review.

13.

Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm.

Ong-Abdullah M, Ordway JM, Jiang N, Ooi SE, Kok SY, Sarpan N, Azimi N, Hashim AT, Ishak Z, Rosli SK, Malike FA, Bakar NA, Marjuni M, Abdullah N, Yaakub Z, Amiruddin MD, Nookiah R, Singh R, Low ET, Chan KL, Azizi N, Smith SW, Bacher B, Budiman MA, Van Brunt A, Wischmeyer C, Beil M, Hogan M, Lakey N, Lim CC, Arulandoo X, Wong CK, Choo CN, Wong WC, Kwan YY, Alwee SS, Sambanthamurthi R, Martienssen RA.

Nature. 2015 Sep 24;525(7570):533-7. doi: 10.1038/nature15365. Epub 2015 Sep 9.

14.

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants.

Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM.

Genome Biol. 2015 Apr 19;16:79. doi: 10.1186/s13059-015-0640-2.

15.

Argonautes team up to silence transposable elements in Arabidopsis.

Underwood CJ, Martienssen RA.

EMBO J. 2015 Mar 4;34(5):579-80. doi: 10.15252/embj.201590971. Epub 2015 Jan 28.

16.

Dicer promotes transcription termination at sites of replication stress to maintain genome stability.

Castel SE, Ren J, Bhattacharjee S, Chang AY, Sánchez M, Valbuena A, Antequera F, Martienssen RA.

Cell. 2014 Oct 23;159(3):572-83. doi: 10.1016/j.cell.2014.09.031. Epub 2014 Oct 16.

17.

Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize.

Thiebaut F, Rojas CA, Grativol C, Motta MR, Vieira T, Regulski M, Martienssen RA, Farinelli L, Hemerly AS, Ferreira PC.

BMC Genomics. 2014 Sep 6;15:766. doi: 10.1186/1471-2164-15-766.

18.

The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB.

Singh R, Low ET, Ooi LC, Ong-Abdullah M, Nookiah R, Ting NC, Marjuni M, Chan PL, Ithnin M, Manaf MA, Nagappan J, Chan KL, Rosli R, Halim MA, Azizi N, Budiman MA, Lakey N, Bacher B, Van Brunt A, Wang C, Hogan M, He D, MacDonald JD, Smith SW, Ordway JM, Martienssen RA, Sambanthamurthi R.

Nat Commun. 2014 Jun 30;5:4106. doi: 10.1038/ncomms5106.

19.

Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum.

Grativol C, Regulski M, Bertalan M, McCombie WR, da Silva FR, Zerlotini Neto A, Vicentini R, Farinelli L, Hemerly AS, Martienssen RA, Ferreira PC.

Plant J. 2014 Jul;79(1):162-72. doi: 10.1111/tpj.12539. Epub 2014 Jun 17.

20.

Differential sRNA regulation in leaves and roots of sugarcane under water depletion.

Thiebaut F, Grativol C, Tanurdzic M, Carnavale-Bottino M, Vieira T, Motta MR, Rojas C, Vincentini R, Chabregas SM, Hemerly AS, Martienssen RA, Ferreira PC.

PLoS One. 2014 Apr 2;9(4):e93822. doi: 10.1371/journal.pone.0093822. eCollection 2014.

21.

Transgenerational epigenetic inheritance: myths and mechanisms.

Heard E, Martienssen RA.

Cell. 2014 Mar 27;157(1):95-109. doi: 10.1016/j.cell.2014.02.045. Review.

22.

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.

Creasey KM, Zhai J, Borges F, Van Ex F, Regulski M, Meyers BC, Martienssen RA.

Nature. 2014 Apr 17;508(7496):411-5. doi: 10.1038/nature13069. Epub 2014 Mar 16.

23.

Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication.

Jacob Y, Bergamin E, Donoghue MT, Mongeon V, LeBlanc C, Voigt P, Underwood CJ, Brunzelle JS, Michaels SD, Reinberg D, Couture JF, Martienssen RA.

Science. 2014 Mar 14;343(6176):1249-53. doi: 10.1126/science.1248357.

24.

CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing.

Kuscu C, Zaratiegui M, Kim HS, Wah DA, Martienssen RA, Schalch T, Joshua-Tor L.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1795-800. doi: 10.1073/pnas.1313096111. Epub 2014 Jan 21. Erratum in: Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):14307.

25.

The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK.

Singh R, Low ET, Ooi LC, Ong-Abdullah M, Ting NC, Nagappan J, Nookiah R, Amiruddin MD, Rosli R, Manaf MA, Chan KL, Halim MA, Azizi N, Lakey N, Smith SW, Budiman MA, Hogan M, Bacher B, Van Brunt A, Wang C, Ordway JM, Sambanthamurthi R, Martienssen RA.

Nature. 2013 Aug 15;500(7462):340-4. doi: 10.1038/nature12356. Epub 2013 Jul 24.

26.

Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.

Singh R, Ong-Abdullah M, Low ET, Manaf MA, Rosli R, Nookiah R, Ooi LC, Ooi SE, Chan KL, Halim MA, Azizi N, Nagappan J, Bacher B, Lakey N, Smith SW, He D, Hogan M, Budiman MA, Lee EK, DeSalle R, Kudrna D, Goicoechea JL, Wing RA, Wilson RK, Fulton RS, Ordway JM, Martienssen RA, Sambanthamurthi R.

Nature. 2013 Aug 15;500(7462):335-9. doi: 10.1038/nature12309. Epub 2013 Jul 24.

27.

Establishing epigenetic variation during genome reprogramming.

Borges F, Martienssen RA.

RNA Biol. 2013 Apr;10(4):490-4. doi: 10.4161/rna.24085.

28.

RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis.

Vu TM, Nakamura M, Calarco JP, Susaki D, Lim PQ, Kinoshita T, Higashiyama T, Martienssen RA, Berger F.

Development. 2013 Jul;140(14):2953-60. doi: 10.1242/dev.092981. Epub 2013 Jun 12.

29.

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, Tingey S, Rafalski A, Hicks J, Ware D, Martienssen RA.

Genome Res. 2013 Oct;23(10):1651-62. doi: 10.1101/gr.153510.112. Epub 2013 Jun 5.

30.

Reprogramming the epigenome in Arabidopsis pollen.

Borges F, Calarco JP, Martienssen RA.

Cold Spring Harb Symp Quant Biol. 2012;77:1-5. doi: 10.1101/sqb.2013.77.014969. Epub 2013 Apr 25. Review.

31.

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond.

Castel SE, Martienssen RA.

Nat Rev Genet. 2013 Feb;14(2):100-12. doi: 10.1038/nrg3355. Review.

32.

Lsd1 and lsd2 control programmed replication fork pauses and imprinting in fission yeast.

Holmes A, Roseaulin L, Schurra C, Waxin H, Lambert S, Zaratiegui M, Martienssen RA, Arcangioli B.

Cell Rep. 2012 Dec 27;2(6):1513-20. doi: 10.1016/j.celrep.2012.10.011. Epub 2012 Dec 20.

33.

Cell signaling and gene regulation.

Paszkowski J, Martienssen RA.

Curr Opin Plant Biol. 2012 Nov;15(5):493-5. doi: 10.1016/j.pbi.2012.10.002. Epub 2012 Nov 7. No abstract available.

PMID:
23141671
34.

Imprinting: DNA methyltransferases illuminate reprogramming.

Calarco JP, Martienssen RA.

Curr Biol. 2012 Nov 6;22(21):R929-31. doi: 10.1016/j.cub.2012.09.030.

35.

FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei.

Borges F, Gardner R, Lopes T, Calarco JP, Boavida LC, Slotkin RK, Martienssen RA, Becker JD.

Plant Methods. 2012 Oct 17;8(1):44. doi: 10.1186/1746-4811-8-44.

36.

SnapShot: small RNA-mediated epigenetic modifications.

Zaratiegui M, Martienssen RA.

Cell. 2012 Oct 12;151(2):456-456.e1. doi: 10.1016/j.cell.2012.10.001. No abstract available.

37.

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.

Calarco JP, Borges F, Donoghue MT, Van Ex F, Jullien PE, Lopes T, Gardner R, Berger F, Feijó JA, Becker JD, Martienssen RA.

Cell. 2012 Sep 28;151(1):194-205. doi: 10.1016/j.cell.2012.09.001. Epub 2012 Sep 20.

38.

Computational identification and analysis of novel sugarcane microRNAs.

Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC.

BMC Genomics. 2012 Jul 2;13:290. doi: 10.1186/1471-2164-13-290.

39.

Silent decision: HP1 protein escorts heterochromatic RNAs to their destiny.

Ren J, Martienssen RA.

EMBO J. 2012 Aug 1;31(15):3237-8. doi: 10.1038/emboj.2012.172. Epub 2012 Jun 15. No abstract available.

40.

A functional phylogenomic view of the seed plants.

Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R.

PLoS Genet. 2011 Dec;7(12):e1002411. doi: 10.1371/journal.pgen.1002411. Epub 2011 Dec 15.

41.

RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.

Zaratiegui M, Castel SE, Irvine DV, Kloc A, Ren J, Li F, de Castro E, Marín L, Chang AY, Goto D, Cande WZ, Antequera F, Arcangioli B, Martienssen RA.

Nature. 2011 Oct 16;479(7371):135-8. doi: 10.1038/nature10501.

42.

Multiple roles for small RNAs during plant reproduction.

Van Ex F, Jacob Y, Martienssen RA.

Curr Opin Plant Biol. 2011 Oct;14(5):588-93. doi: 10.1016/j.pbi.2011.07.003. Epub 2011 Jul 30. Review.

43.

Germline reprogramming of heterochromatin in plants.

Creasey KM, Martienssen RA.

Cold Spring Harb Symp Quant Biol. 2010;75:269-74. doi: 10.1101/sqb.2010.75.064. Epub 2011 Apr 18. Review.

44.

RNA interference and heterochromatin assembly.

Volpe T, Martienssen RA.

Cold Spring Harb Perspect Biol. 2011 Sep 1;3(9):a003731. doi: 10.1101/cshperspect.a003731. Review.

45.

MicroRNA activity in the Arabidopsis male germline.

Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD.

J Exp Bot. 2011 Mar;62(5):1611-20. doi: 10.1093/jxb/erq452. Review. Erratum in: J Exp Bot. 2011 Jun;62(10):3699.

46.

Genome reprogramming and small interfering RNA in the Arabidopsis germline.

Calarco JP, Martienssen RA.

Curr Opin Genet Dev. 2011 Apr;21(2):134-9. doi: 10.1016/j.gde.2011.01.014. Epub 2011 Feb 15. Review.

47.

H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases.

Hansen KR, Hazan I, Shanker S, Watt S, Verhein-Hansen J, Bähler J, Martienssen RA, Partridge JF, Cohen A, Thon G.

PLoS Genet. 2011 Jan 6;7(1):e1001268. doi: 10.1371/journal.pgen.1001268.

48.

Chromatin reprogramming: gender equality during Arabidopsis germline differentiation.

Jacob Y, Martienssen RA.

Curr Biol. 2011 Jan 11;21(1):R20-2. doi: 10.1016/j.cub.2010.11.052.

49.

CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR.

Zaratiegui M, Vaughn MW, Irvine DV, Goto D, Watt S, Bähler J, Arcangioli B, Martienssen RA.

Nature. 2011 Jan 6;469(7328):112-5. doi: 10.1038/nature09608. Epub 2010 Dec 12.

50.

Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state.

Lee TJ, Pascuzzi PE, Settlage SB, Shultz RW, Tanurdzic M, Rabinowicz PD, Menges M, Zheng P, Main D, Murray JA, Sosinski B, Allen GC, Martienssen RA, Hanley-Bowdoin L, Vaughn MW, Thompson WF.

PLoS Genet. 2010 Jun 10;6(6):e1000982. doi: 10.1371/journal.pgen.1000982.

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