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Items: 44

1.

A multi-layered mechanistic modelling approach to understand how effector genes extend beyond phytoplasma to modulate plant hosts, insect vectors and the environment.

Tomkins M, Kliot A, Marée AF, Hogenhout SA.

Curr Opin Plant Biol. 2018 Mar 13;44:39-48. doi: 10.1016/j.pbi.2018.02.002. [Epub ahead of print] Review.

2.

Morphometrics of complex cell shapes: lobe contribution elliptic Fourier analysis (LOCO-EFA).

Sánchez-Corrales YE, Hartley M, van Rooij J, Marée AFM, Grieneisen VA.

Development. 2018 Mar 20;145(6). pii: dev156778. doi: 10.1242/dev.156778.

3.

Pavement cells and the topology puzzle.

Carter R, Sánchez-Corrales YE, Hartley M, Grieneisen VA, Marée AFM.

Development. 2017 Dec 1;144(23):4386-4397. doi: 10.1242/dev.157073. Epub 2017 Oct 30.

4.

Rapid transporter regulation prevents substrate flow traffic jams in boron transport.

Sotta N, Duncan S, Tanaka M, Sato T, Marée AF, Fujiwara T, Grieneisen VA.

Elife. 2017 Sep 5;6. pii: e27038. doi: 10.7554/eLife.27038.

5.

Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root.

Di Mambro R, De Ruvo M, Pacifici E, Salvi E, Sozzani R, Benfey PN, Busch W, Novak O, Ljung K, Di Paola L, Marée AFM, Costantino P, Grieneisen VA, Sabatini S.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):E7641-E7649. doi: 10.1073/pnas.1705833114. Epub 2017 Aug 22.

6.

A Sigmoid Functional Response Emerges When Cytotoxic T Lymphocytes Start Killing Fresh Target Cells.

Gadhamsetty S, Marée AFM, Beltman JB, de Boer RJ.

Biophys J. 2017 Mar 28;112(6):1221-1235. doi: 10.1016/j.bpj.2017.02.008.

7.

Tissue Dimensionality Influences the Functional Response of Cytotoxic T Lymphocyte-Mediated Killing of Targets.

Gadhamsetty S, Marée AF, de Boer RJ, Beltman JB.

Front Immunol. 2017 Jan 11;7:668. doi: 10.3389/fimmu.2016.00668. eCollection 2016.

8.

Formation of polarity convergences underlying shoot outgrowths.

Abley K, Sauret-Güeto S, Marée AF, Coen E.

Elife. 2016 Aug 1;5. pii: e18165. doi: 10.7554/eLife.18165.

9.

Parsimonious Model of Vascular Patterning Links Transverse Hormone Fluxes to Lateral Root Initiation: Auxin Leads the Way, while Cytokinin Levels Out.

el-Showk S, Help-Rinta-Rahko H, Blomster T, Siligato R, Marée AF, Mähönen AP, Grieneisen VA.

PLoS Comput Biol. 2015 Oct 27;11(10):e1004450. doi: 10.1371/journal.pcbi.1004450. eCollection 2015 Oct.

10.

Ethylene-Mediated Regulation of A2-Type CYCLINs Modulates Hyponastic Growth in Arabidopsis.

Polko JK, van Rooij JA, Vanneste S, Pierik R, Ammerlaan AM, Vergeer-van Eijk MH, McLoughlin F, Gühl K, Van Isterdael G, Voesenek LA, Millenaar FF, Beeckman T, Peeters AJ, Marée AF, van Zanten M.

Plant Physiol. 2015 Sep;169(1):194-208. doi: 10.1104/pp.15.00343. Epub 2015 Jun 3.

11.

The biophysical nature of cells: potential cell behaviours revealed by analytical and computational studies of cell surface mechanics.

Magno R, Grieneisen VA, Marée AF.

BMC Biophys. 2015 May 12;8:8. doi: 10.1186/s13628-015-0022-x. eCollection 2015.

12.

Mathematical modeling and experimental validation of the spatial distribution of boron in the root of Arabidopsis thaliana identify high boron accumulation in the tip and predict a distinct root tip uptake function.

Shimotohno A, Sotta N, Sato T, De Ruvo M, Marée AF, Grieneisen VA, Fujiwara T.

Plant Cell Physiol. 2015 Apr;56(4):620-30. doi: 10.1093/pcp/pcv016. Epub 2015 Feb 9.

13.

A general functional response of cytotoxic T lymphocyte-mediated killing of target cells.

Gadhamsetty S, Marée AF, Beltman JB, de Boer RJ.

Biophys J. 2014 Apr 15;106(8):1780-91. doi: 10.1016/j.bpj.2014.01.048.

14.

Juicy stories on female reproductive tissue development: coordinating the hormone flows.

Grieneisen VA, Marée AF, Ostergaard L.

J Integr Plant Biol. 2013 Sep;55(9):847-63. doi: 10.1111/jipb.12092. Review.

PMID:
23869979
15.

An intracellular partitioning-based framework for tissue cell polarity in plants and animals.

Abley K, De Reuille PB, Strutt D, Bangham A, Prusinkiewicz P, Marée AF, Grieneisen VA, Coen E.

Development. 2013 May;140(10):2061-74. doi: 10.1242/dev.062984.

16.

Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens.

Vroomans RM, Marée AF, de Boer RJ, Beltman JB.

PLoS Comput Biol. 2012;8(11):e1002763. doi: 10.1371/journal.pcbi.1002763. Epub 2012 Nov 15.

17.

Tissue-resident memory CD8+ T cells continuously patrol skin epithelia to quickly recognize local antigen.

Ariotti S, Beltman JB, Chodaczek G, Hoekstra ME, van Beek AE, Gomez-Eerland R, Ritsma L, van Rheenen J, Marée AF, Zal T, de Boer RJ, Haanen JB, Schumacher TN.

Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19739-44. doi: 10.1073/pnas.1208927109. Epub 2012 Nov 12.

18.

Deterministic versus stochastic cell polarisation through wave-pinning.

Walther GR, Marée AF, Edelstein-Keshet L, Grieneisen VA.

Bull Math Biol. 2012 Nov;74(11):2570-99. doi: 10.1007/s11538-012-9766-5. Epub 2012 Sep 7.

19.

A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division.

Cruz-Ramírez A, Díaz-Triviño S, Blilou I, Grieneisen VA, Sozzani R, Zamioudis C, Miskolczi P, Nieuwland J, Benjamins R, Dhonukshe P, Caballero-Pérez J, Horvath B, Long Y, Mähönen AP, Zhang H, Xu J, Murray JA, Benfey PN, Bako L, Marée AF, Scheres B.

Cell. 2012 Aug 31;150(5):1002-15. doi: 10.1016/j.cell.2012.07.017. Epub 2012 Aug 23.

20.

How cells integrate complex stimuli: the effect of feedback from phosphoinositides and cell shape on cell polarization and motility.

Marée AF, Grieneisen VA, Edelstein-Keshet L.

PLoS Comput Biol. 2012;8(3):e1002402. doi: 10.1371/journal.pcbi.1002402. Epub 2012 Mar 1.

21.

Ethylene-induced differential petiole growth in Arabidopsis thaliana involves local microtubule reorientation and cell expansion.

Polko JK, van Zanten M, van Rooij JA, Marée AF, Voesenek LA, Peeters AJ, Pierik R.

New Phytol. 2012 Jan;193(2):339-48. doi: 10.1111/j.1469-8137.2011.03920.x. Epub 2011 Oct 4. Erratum in: New Phytol. 2012 Mar;193(4):1098.

22.

Analysing immune cell migration.

Beltman JB, Marée AF, de Boer RJ.

Nat Rev Immunol. 2009 Nov;9(11):789-98. doi: 10.1038/nri2638. Epub 2009 Oct 16. Review.

PMID:
19834485
23.

The role of fluctuations and stress on the effective viscosity of cell aggregates.

Marmottant P, Mgharbel A, Käfer J, Audren B, Rieu JP, Vial JC, van der Sanden B, Marée AF, Graner F, Delanoë-Ayari H.

Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17271-5. doi: 10.1073/pnas.0902085106. Epub 2009 Sep 25. Erratum in: Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19204.

24.

Towards estimating the true duration of dendritic cell interactions with T cells.

Beltman JB, Henrickson SE, von Andrian UH, de Boer RJ, Marée AF.

J Immunol Methods. 2009 Aug 15;347(1-2):54-69. doi: 10.1016/j.jim.2009.05.013. Epub 2009 Jun 9.

25.

Root system architecture from coupling cell shape to auxin transport.

Laskowski M, Grieneisen VA, Hofhuis H, Hove CA, Hogeweg P, Marée AF, Scheres B.

PLoS Biol. 2008 Dec 16;6(12):e307. doi: 10.1371/journal.pbio.0060307. Erratum in: PLoS Biol. 2014 Oct;12(10):e1001984.

26.

Cell adhesion and cortex contractility determine cell patterning in the Drosophila retina.

Käfer J, Hayashi T, Marée AF, Carthew RW, Graner F.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18549-54. Epub 2007 Nov 14.

27.

A quantitative comparison of rates of phagocytosis and digestion of apoptotic cells by macrophages from normal (BALB/c) and diabetes-prone (NOD) mice.

Marée AF, Komba M, Finegood DT, Edelstein-Keshet L.

J Appl Physiol (1985). 2008 Jan;104(1):157-69. Epub 2007 Oct 25.

28.

Auxin transport is sufficient to generate a maximum and gradient guiding root growth.

Grieneisen VA, Xu J, Marée AF, Hogeweg P, Scheres B.

Nature. 2007 Oct 25;449(7165):1008-13.

PMID:
17960234
29.

Mathematical model for spatial segregation of the Rho-family GTPases based on inhibitory crosstalk.

Jilkine A, Marée AF, Edelstein-Keshet L.

Bull Math Biol. 2007 Aug;69(6):1943-78. Epub 2007 Apr 25.

PMID:
17457653
30.

Spatial modelling of brief and long interactions between T cells and dendritic cells.

Beltman JB, Marée AF, de Boer RJ.

Immunol Cell Biol. 2007 Jun;85(4):306-14. Epub 2007 Apr 10.

PMID:
17420768
31.

Lymph node topology dictates T cell migration behavior.

Beltman JB, Marée AF, Lynch JN, Miller MJ, de Boer RJ.

J Exp Med. 2007 Apr 16;204(4):771-80. Epub 2007 Mar 26.

32.

Polarization and movement of keratocytes: a multiscale modelling approach.

Marée AF, Jilkine A, Dawes A, Grieneisen VA, Edelstein-Keshet L.

Bull Math Biol. 2006 Jul;68(5):1169-211. Epub 2006 Jun 23.

PMID:
16794915
33.

Moving forward moving backward: directional sorting of chemotactic cells due to size and adhesion differences.

Käfer J, Hogeweg P, Marée AF.

PLoS Comput Biol. 2006 Jun 9;2(6):e56. Epub 2006 Jun 9.

34.

Modeling competition among autoreactive CD8+ T cells in autoimmune diabetes: implications for antigen-specific therapy.

Marée AF, Santamaria P, Edelstein-Keshet L.

Int Immunol. 2006 Jul;18(7):1067-77. Epub 2006 May 25.

PMID:
16728432
35.

Modelling the onset of Type 1 diabetes: can impaired macrophage phagocytosis make the difference between health and disease?

Marée AF, Kublik R, Finegood DT, Edelstein-Keshet L.

Philos Trans A Math Phys Eng Sci. 2006 May 15;364(1842):1267-82.

36.

The RNA silencing pathway: the bits and pieces that matter.

Groenenboom MA, Marée AF, Hogeweg P.

PLoS Comput Biol. 2005 Jul;1(2):155-65. Epub 2005 Jul 29.

37.

Prevention of diabetes by manipulation of anti-IGRP autoimmunity: high efficiency of a low-affinity peptide.

Han B, Serra P, Amrani A, Yamanouchi J, Marée AF, Edelstein-Keshet L, Santamaria P.

Nat Med. 2005 Jun;11(6):645-52. Epub 2005 May 22.

PMID:
15908957
38.

Quantifying macrophage defects in type 1 diabetes.

Marée AF, Komba M, Dyck C, Łabecki M, Finegood DT, Edelstein-Keshet L.

J Theor Biol. 2005 Apr 21;233(4):533-51. Epub 2005 Jan 20.

PMID:
15748914
39.

Modelling Dictyostelium discoideum morphogenesis: the culmination.

Marée AF, Hogeweg P.

Bull Math Biol. 2002 Mar;64(2):327-53.

PMID:
11926120
40.
42.
43.

Estimating relative fitness in viral competition experiments.

Marée AF, Keulen W, Boucher CA, De Boer RJ.

J Virol. 2000 Dec;74(23):11067-72.

44.

Responses of complex cells in area 17 of the cat to bi-vectorial transparent motion.

van Wezel RJ, Lankheet MJ, Verstraten FA, Maree AF, van de Grind WA.

Vision Res. 1996 Sep;36(18):2805-13.

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