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Items: 29

1.

Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes.

Pérez-Rico YA, Boeva V, Mallory AC, Bitetti A, Majello S, Barillot E, Shkumatava A.

Genome Res. 2017 Feb;27(2):259-268. doi: 10.1101/gr.203679.115. Epub 2016 Dec 13.

2.

Plants Encode a General siRNA Suppressor That Is Induced and Suppressed by Viruses.

Shamandi N, Zytnicki M, Charbonnel C, Elvira-Matelot E, Bochnakian A, Comella P, Mallory AC, Lepère G, Sáez-Vásquez J, Vaucheret H.

PLoS Biol. 2015 Dec 22;13(12):e1002326. doi: 10.1371/journal.pbio.1002326. eCollection 2015 Dec.

3.

LncRNAs in vertebrates: advances and challenges.

Mallory AC, Shkumatava A.

Biochimie. 2015 Oct;117:3-14. doi: 10.1016/j.biochi.2015.03.014. Epub 2015 Mar 24. Review.

4.

In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs.

Martínez de Alba AE, Moreno AB, Gabriel M, Mallory AC, Christ A, Bounon R, Balzergue S, Aubourg S, Gautheret D, Crespi MD, Vaucheret H, Maizel A.

Nucleic Acids Res. 2015 Mar 11;43(5):2902-13. doi: 10.1093/nar/gkv119. Epub 2015 Feb 18.

5.

Chromatin meets the cell cycle.

Raynaud C, Mallory AC, Latrasse D, Jégu T, Bruggeman Q, Delarue M, Bergounioux C, Benhamed M.

J Exp Bot. 2014 Jun;65(10):2677-89. doi: 10.1093/jxb/ert433. Epub 2014 Feb 4. Review.

PMID:
24497647
6.

Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants.

Moreno AB, Martínez de Alba AE, Bardou F, Crespi MD, Vaucheret H, Maizel A, Mallory AC.

Nucleic Acids Res. 2013 Apr;41(8):4699-708. doi: 10.1093/nar/gkt152. Epub 2013 Mar 12.

7.

The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA.

Martínez de Alba AE, Jauvion V, Mallory AC, Bouteiller N, Vaucheret H.

Nucleic Acids Res. 2011 Nov;39(21):9339-44. doi: 10.1093/nar/gkr590. Epub 2011 Aug 3.

8.

A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5'->3' exoribonuclease (XRN) activities in Arabidopsis thaliana roots.

Hirsch J, Misson J, Crisp PA, David P, Bayle V, Estavillo GM, Javot H, Chiarenza S, Mallory AC, Maizel A, Declerck M, Pogson BJ, Vaucheret H, Crespi M, Desnos T, Thibaud MC, Nussaume L, Marin E.

PLoS One. 2011 Feb 3;6(2):e16724. doi: 10.1371/journal.pone.0016724.

9.

Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing.

Mallory AC, Hinze A, Tucker MR, Bouché N, Gasciolli V, Elmayan T, Lauressergues D, Jauvion V, Vaucheret H, Laux T.

PLoS Genet. 2009 Sep;5(9):e1000646. doi: 10.1371/journal.pgen.1000646. Epub 2009 Sep 18.

10.

ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways.

Mallory AC, Vaucheret H.

EMBO Rep. 2009 May;10(5):521-6. doi: 10.1038/embor.2009.32. Epub 2009 Apr 3.

11.

Criteria for annotation of plant MicroRNAs.

Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK.

Plant Cell. 2008 Dec;20(12):3186-90. doi: 10.1105/tpc.108.064311. Epub 2008 Dec 12.

12.

MicroRNA maturation and action--the expanding roles of ARGONAUTEs.

Mallory AC, Elmayan T, Vaucheret H.

Curr Opin Plant Biol. 2008 Oct;11(5):560-6. doi: 10.1016/j.pbi.2008.06.008. Epub 2008 Aug 6. Review.

PMID:
18691933
13.

MicroRNA-directed regulation: to cleave or not to cleave.

Mallory AC, Bouché N.

Trends Plant Sci. 2008 Jul;13(7):359-67. doi: 10.1016/j.tplants.2008.03.007. Epub 2008 May 22. Review.

PMID:
18501664
14.

Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors.

Gy I, Gasciolli V, Lauressergues D, Morel JB, Gombert J, Proux F, Proux C, Vaucheret H, Mallory AC.

Plant Cell. 2007 Nov;19(11):3451-61. Epub 2007 Nov 9.

15.

Functions of microRNAs and related small RNAs in plants.

Mallory AC, Vaucheret H.

Nat Genet. 2006 Jun;38 Suppl:S31-6. Review. Erratum in: Nat Genet. 2006 Jul;38(7):850.

PMID:
16736022
16.
17.

Ectopic DICER-LIKE1 expression in P1/HC-Pro Arabidopsis rescues phenotypic anomalies but not defects in microRNA and silencing pathways.

Mlotshwa S, Schauer SE, Smith TH, Mallory AC, Herr JM Jr, Roth B, Merchant DS, Ray A, Bowman LH, Vance VB.

Plant Cell. 2005 Nov;17(11):2873-85. Epub 2005 Oct 7.

18.

Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

Gasciolli V, Mallory AC, Bartel DP, Vaucheret H.

Curr Biol. 2005 Aug 23;15(16):1494-500.

20.

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.

Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crété P.

Mol Cell. 2004 Oct 8;16(1):69-79.

21.

MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region.

Mallory AC, Reinhart BJ, Jones-Rhoades MW, Tang G, Zamore PD, Barton MK, Bartel DP.

EMBO J. 2004 Aug 18;23(16):3356-64. Epub 2004 Jul 29.

22.
23.

MicroRNAs: something important between the genes.

Mallory AC, Vaucheret H.

Curr Opin Plant Biol. 2004 Apr;7(2):120-5. Review.

PMID:
15003210
24.
25.

A viral suppressor of RNA silencing differentially regulates the accumulation of short interfering RNAs and micro-RNAs in tobacco.

Mallory AC, Reinhart BJ, Bartel D, Vance VB, Bowman LH.

Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):15228-33. Epub 2002 Oct 25.

26.

The amplicon-plus system for high-level expression of transgenes in plants.

Mallory AC, Parks G, Endres MW, Baulcombe D, Bowman LH, Pruss GJ, Vance VB.

Nat Biotechnol. 2002 Jun;20(6):622-5.

PMID:
12042869
27.

HC-Pro suppression of transgene silencing eliminates the small RNAs but not transgene methylation or the mobile signal.

Mallory AC, Ely L, Smith TH, Marathe R, Anandalakshmi R, Fagard M, Vaucheret H, Pruss G, Bowman L, Vance VB.

Plant Cell. 2001 Mar;13(3):571-83.

28.

Contribution of fungal loline alkaloids to protection from aphids in a grass-endophyte mutualism.

Wilkinson HH, Siegel MR, Blankenship JD, Mallory AC, Bush LP, Schardl CL.

Mol Plant Microbe Interact. 2000 Oct;13(10):1027-33.

29.

A viral suppressor of gene silencing in plants.

Anandalakshmi R, Pruss GJ, Ge X, Marathe R, Mallory AC, Smith TH, Vance VB.

Proc Natl Acad Sci U S A. 1998 Oct 27;95(22):13079-84.

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