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Items: 31

1.

The evolution of popular music: USA 1960-2010.

Mauch M, MacCallum RM, Levy M, Leroi AM.

R Soc Open Sci. 2015 May 6;2(5):150081. doi: 10.1098/rsos.150081. eCollection 2015 May.

2.

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, Brockman AI, Burkot TR, Burt A, Chan CS, Chauve C, Chiu JC, Christensen M, Costantini C, Davidson VL, Deligianni E, Dottorini T, Dritsou V, Gabriel SB, Guelbeogo WM, Hall AB, Han MV, Hlaing T, Hughes DS, Jenkins AM, Jiang X, Jungreis I, Kakani EG, Kamali M, Kemppainen P, Kennedy RC, Kirmitzoglou IK, Koekemoer LL, Laban N, Langridge N, Lawniczak MK, Lirakis M, Lobo NF, Lowy E, MacCallum RM, Mao C, Maslen G, Mbogo C, McCarthy J, Michel K, Mitchell SN, Moore W, Murphy KA, Naumenko AN, Nolan T, Novoa EM, O'Loughlin S, Oringanje C, Oshaghi MA, Pakpour N, Papathanos PA, Peery AN, Povelones M, Prakash A, Price DP, Rajaraman A, Reimer LJ, Rinker DC, Rokas A, Russell TL, Sagnon N, Sharakhova MV, Shea T, Simão FA, Simard F, Slotman MA, Somboon P, Stegniy V, Struchiner CJ, Thomas GW, Tojo M, Topalis P, Tubio JM, Unger MF, Vontas J, Walton C, Wilding CS, Willis JH, Wu YC, Yan G, Zdobnov EM, Zhou X, Catteruccia F, Christophides GK, Collins FH, Cornman RS, Crisanti A, Donnelly MJ, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Hansen IA, Howell PI, Kafatos FC, Kellis M, Lawson D, Louis C, Luckhart S, Muskavitch MA, Ribeiro JM, Riehle MA, Sharakhov IV, Tu Z, Zwiebel LJ, Besansky NJ.

Science. 2015 Jan 2;347(6217):1258522. doi: 10.1126/science.1258522. Epub 2014 Nov 27.

3.

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases.

Giraldo-Calderón GI, Emrich SJ, MacCallum RM, Maslen G, Dialynas E, Topalis P, Ho N, Gesing S; VectorBase Consortium, Madey G, Collins FH, Lawson D.

Nucleic Acids Res. 2015 Jan;43(Database issue):D707-13. doi: 10.1093/nar/gku1117. Epub 2014 Dec 15.

4.

Multivariate outcome prediction in traumatic brain injury with focus on laboratory values.

Nelson DW, Rudehill A, MacCallum RM, Holst A, Wanecek M, Weitzberg E, Bellander BM.

J Neurotrauma. 2012 Nov 20;29(17):2613-24. doi: 10.1089/neu.2012.2468. Epub 2012 Nov 14.

PMID:
22994879
5.

Evolution of music by public choice.

MacCallum RM, Mauch M, Burt A, Leroi AM.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12081-6. doi: 10.1073/pnas.1203182109. Epub 2012 Jun 18.

6.

Transcriptome of the adult female malaria mosquito vector Anopheles albimanus.

Martínez-Barnetche J, Gómez-Barreto RE, Ovilla-Muñoz M, Téllez-Sosa J, García López DE, Dinglasan RR, Ubaida Mohien C, MacCallum RM, Redmond SN, Gibbons JG, Rokas A, Machado CA, Cazares-Raga FE, González-Cerón L, Hernández-Martínez S, Rodríguez López MH.

BMC Genomics. 2012 May 30;13:207. doi: 10.1186/1471-2164-13-207.

7.

An expression map for Anopheles gambiae.

Maccallum RM, Redmond SN, Christophides GK.

BMC Genomics. 2011 Dec 20;12:620. doi: 10.1186/1471-2164-12-620.

8.

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.

Megy K, Emrich SJ, Lawson D, Campbell D, Dialynas E, Hughes DS, Koscielny G, Louis C, Maccallum RM, Redmond SN, Sheehan A, Topalis P, Wilson D; VectorBase Consortium.

Nucleic Acids Res. 2012 Jan;40(Database issue):D729-34. doi: 10.1093/nar/gkr1089. Epub 2011 Dec 1.

9.

A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.

Chaerkady R, Kelkar DS, Muthusamy B, Kandasamy K, Dwivedi SB, Sahasrabuddhe NA, Kim MS, Renuse S, Pinto SM, Sharma R, Pawar H, Sekhar NR, Mohanty AK, Getnet D, Yang Y, Zhong J, Dash AP, MacCallum RM, Delanghe B, Mlambo G, Kumar A, Keshava Prasad TS, Okulate M, Kumar N, Pandey A.

Genome Res. 2011 Nov;21(11):1872-81. doi: 10.1101/gr.127951.111. Epub 2011 Jul 27.

10.

Analyses of cerebral microdialysis in patients with traumatic brain injury: relations to intracranial pressure, cerebral perfusion pressure and catheter placement.

Nelson DW, Thornquist B, MacCallum RM, Nyström H, Holst A, Rudehill A, Wanecek M, Bellander BM, Weitzberg E.

BMC Med. 2011 Mar 2;9:21. doi: 10.1186/1741-7015-9-21.

11.

Extended analysis of early computed tomography scans of traumatic brain injured patients and relations to outcome.

Nelson DW, Nyström H, MacCallum RM, Thornquist B, Lilja A, Bellander BM, Rudehill A, Wanecek M, Weitzberg E.

J Neurotrauma. 2010 Jan;27(1):51-64. doi: 10.1089/neu.2009.0986.

PMID:
19698072
12.

VectorBase: a data resource for invertebrate vector genomics.

Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Hammond M, Hill CA, Konopinski N, Lobo NF, MacCallum RM, Madey G, Megy K, Meyer J, Redmond S, Severson DW, Stinson EO, Topalis P, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins FH.

Nucleic Acids Res. 2009 Jan;37(Database issue):D583-7. doi: 10.1093/nar/gkn857. Epub 2008 Nov 21.

13.

Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes.

Waterhouse RM, Kriventseva EV, Meister S, Xi Z, Alvarez KS, Bartholomay LC, Barillas-Mury C, Bian G, Blandin S, Christensen BM, Dong Y, Jiang H, Kanost MR, Koutsos AC, Levashina EA, Li J, Ligoxygakis P, Maccallum RM, Mayhew GF, Mendes A, Michel K, Osta MA, Paskewitz S, Shin SW, Vlachou D, Wang L, Wei W, Zheng L, Zou Z, Severson DW, Raikhel AS, Kafatos FC, Dimopoulos G, Zdobnov EM, Christophides GK.

Science. 2007 Jun 22;316(5832):1738-43.

14.

Life cycle transcriptome of the malaria mosquito Anopheles gambiae and comparison with the fruitfly Drosophila melanogaster.

Koutsos AC, Blass C, Meister S, Schmidt S, MacCallum RM, Soares MB, Collins FH, Benes V, Zdobnov E, Kafatos FC, Christophides GK.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11304-9. Epub 2007 Jun 11.

15.

NucPred--predicting nuclear localization of proteins.

Brameier M, Krings A, MacCallum RM.

Bioinformatics. 2007 May 1;23(9):1159-60. Epub 2007 Mar 1.

PMID:
17332022
16.
17.

The proteome: structure, function and evolution.

Fleming K, Kelley LA, Islam SA, MacCallum RM, Muller A, Pazos F, Sternberg MJ.

Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):441-51. Review.

18.

Automatic discovery of cross-family sequence features associated with protein function.

Brameier M, Haan J, Krings A, MacCallum RM.

BMC Bioinformatics. 2006 Jan 12;7:16.

19.

CASP6 assessment of contact prediction.

Graña O, Baker D, MacCallum RM, Meiler J, Punta M, Rost B, Tress ML, Valencia A.

Proteins. 2005;61 Suppl 7:214-24.

PMID:
16187364
20.

Cerebral microdialysis of patients with severe traumatic brain injury exhibits highly individualistic patterns as visualized by cluster analysis with self-organizing maps.

Nelson DW, Bellander BM, Maccallum RM, Axelsson J, Alm M, Wallin M, Weitzberg E, Rudehill A.

Crit Care Med. 2004 Dec;32(12):2428-36.

PMID:
15599147
21.

Striped sheets and protein contact prediction.

MacCallum RM.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i224-31.

PMID:
15262803
22.

3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.

Fleming K, Müller A, MacCallum RM, Sternberg MJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D245-50.

23.

Towards optimal views of proteins.

Sverud O, MacCallum RM.

Bioinformatics. 2003 May 1;19(7):882-8.

PMID:
12724299
24.

Structural characterization of the human proteome.

Müller A, MacCallum RM, Sternberg MJ.

Genome Res. 2002 Nov;12(11):1625-41.

25.

Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM.

Bates PA, Kelley LA, MacCallum RM, Sternberg MJ.

Proteins. 2001;Suppl 5:39-46.

PMID:
11835480
26.

Enhanced genome annotation using structural profiles in the program 3D-PSSM.

Kelley LA, MacCallum RM, Sternberg MJ.

J Mol Biol. 2000 Jun 2;299(2):499-520.

PMID:
10860755
27.
28.

Benchmarking PSI-BLAST in genome annotation.

Müller A, MacCallum RM, Sternberg MJ.

J Mol Biol. 1999 Nov 12;293(5):1257-71.

PMID:
10547299
29.

CAFASP-1: critical assessment of fully automated structure prediction methods.

Fischer D, Barret C, Bryson K, Elofsson A, Godzik A, Jones D, Karplus KJ, Kelley LA, MacCallum RM, Pawowski K, Rost B, Rychlewski L, Sternberg M.

Proteins. 1999;Suppl 3:209-17.

PMID:
10526371
30.

Progress in protein structure prediction: assessment of CASP3.

Sternberg MJ, Bates PA, Kelley LA, MacCallum RM.

Curr Opin Struct Biol. 1999 Jun;9(3):368-73. Review.

PMID:
10361096
31.

Antibody-antigen interactions: contact analysis and binding site topography.

MacCallum RM, Martin AC, Thornton JM.

J Mol Biol. 1996 Oct 11;262(5):732-45.

PMID:
8876650

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