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Items: 48


Assessing the relative impact of historical divergence and inter-group transmission on cultural patterns: a method from evolutionary ecology.

von Cramon-Taubadel N, Lycett SJ.

Philos Trans R Soc Lond B Biol Sci. 2018 Apr 5;373(1743). pii: 20170054. doi: 10.1098/rstb.2017.0054.


Using whole genome sequencing to investigate transmission in a multi-host system: bovine tuberculosis in New Zealand.

Crispell J, Zadoks RN, Harris SR, Paterson B, Collins DM, de-Lisle GW, Livingstone P, Neill MA, Biek R, Lycett SJ, Kao RR, Price-Carter M.

BMC Genomics. 2017 Feb 16;18(1):180. doi: 10.1186/s12864-017-3569-x.


Quantifying predictors for the spatial diffusion of avian influenza virus in China.

Lu L, Leigh Brown AJ, Lycett SJ.

BMC Evol Biol. 2017 Jan 13;17(1):16. doi: 10.1186/s12862-016-0845-3.


Modelling the impact of co-circulating low pathogenic avian influenza viruses on epidemics of highly pathogenic avian influenza in poultry.

Nickbakhsh S, Hall MD, Dorigatti I, Lycett SJ, Mulatti P, Monne I, Fusaro A, Woolhouse MEJ, Rambaut A, Kao RR.

Epidemics. 2016 Dec;17:27-34. doi: 10.1016/j.epidem.2016.10.005. Epub 2016 Oct 19.


A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland.

Ragonnet-Cronin ML, Shilaih M, Günthard HF, Hodcroft EB, Böni J, Fearnhill E, Dunn D, Yerly S, Klimkait T, Aubert V, Yang WL, Brown AE, Lycett SJ, Kouyos R, Brown AJ.

Sci Rep. 2016 Sep 19;6:32251. doi: 10.1038/srep32251.


Transmission of biology and culture among post-contact Native Americans on the western Great Plains.

Lycett SJ, von Cramon-Taubadel N.

Sci Rep. 2016 Aug 12;6:25695. doi: 10.1038/srep25695.


Role of the B Allele of Influenza A Virus Segment 8 in Setting Mammalian Host Range and Pathogenicity.

Turnbull ML, Wise HM, Nicol MQ, Smith N, Dunfee RL, Beard PM, Jagger BW, Ligertwood Y, Hardisty GR, Xiao H, Benton DJ, Coburn AM, Paulo JA, Gygi SP, McCauley JW, Taubenberger JK, Lycett SJ, Weekes MP, Dutia BM, Digard P.

J Virol. 2016 Sep 29;90(20):9263-84. doi: 10.1128/JVI.01205-16. Print 2016 Oct 15.


Use of bacterial whole-genome sequencing to investigate local persistence and spread in bovine tuberculosis.

Trewby H, Wright D, Breadon EL, Lycett SJ, Mallon TR, McCormick C, Johnson P, Orton RJ, Allen AR, Galbraith J, Herzyk P, Skuce RA, Biek R, Kao RR.

Epidemics. 2016 Mar;14:26-35. doi: 10.1016/j.epidem.2015.08.003. Epub 2015 Oct 19.


Broadwick: a framework for computational epidemiology.

O'Hare A, Lycett SJ, Doherty T, Salvador LC, Kao RR.

BMC Bioinformatics. 2016 Feb 4;17:65. doi: 10.1186/s12859-016-0903-2.


Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters.

Ragonnet-Cronin M, Lycett SJ, Hodcroft EB, Hué S, Fearnhill E, Brown AE, Delpech V, Dunn D, Leigh Brown AJ; United Kingdom HIV Drug Resistance Database.

J Infect Dis. 2016 May 1;213(9):1410-8. doi: 10.1093/infdis/jiv758. Epub 2015 Dec 23.


Bones hold the key to DNA virus history and epidemiology.

Toppinen M, Perdomo MF, Palo JU, Simmonds P, Lycett SJ, Söderlund-Venermo M, Sajantila A, Hedman K.

Sci Rep. 2015 Nov 27;5:17226. doi: 10.1038/srep17226.


Are human hands and feet affected by climate? A test of Allen's rule.

Betti L, Lycett SJ, von Cramon-Taubadel N, Pearson OM.

Am J Phys Anthropol. 2015 Sep;158(1):132-40. doi: 10.1002/ajpa.22774. Epub 2015 Jun 29.


A comparison of catarrhine genetic distances with pelvic and cranial morphology: implications for determining hominin phylogeny.

von Cramon-Taubadel N, Lycett SJ.

J Hum Evol. 2014 Dec;77:179-86. doi: 10.1016/j.jhevol.2014.06.009. Epub 2014 Nov 4.


Dynamics of cultural transmission in Native Americans of the high Great Plains.

Lycett SJ.

PLoS One. 2014 Nov 5;9(11):e112244. doi: 10.1371/journal.pone.0112244. eCollection 2014.


Determining the phylogenetic and phylogeographic origin of highly pathogenic avian influenza (H7N3) in Mexico.

Lu L, Lycett SJ, Leigh Brown AJ.

PLoS One. 2014 Sep 16;9(9):e107330. doi: 10.1371/journal.pone.0107330. eCollection 2014.


Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions.

Hué S, Brown AE, Ragonnet-Cronin M, Lycett SJ, Dunn DT, Fearnhill E, Dolling DI, Pozniak A, Pillay D, Delpech VC, Leigh Brown AJ; UK Collaboration on HIV Drug Resistance and the Collaborative HIV, Anti-HIV Drug Resistance Network (CHAIN).

AIDS. 2014 Aug 24;28(13):1967-75. doi: 10.1097/QAD.0000000000000383.


The interaction of neutral evolutionary processes with climatically-driven adaptive changes in the 3D shape of the human os coxae.

Betti L, von Cramon-Taubadel N, Manica A, Lycett SJ.

J Hum Evol. 2014 Aug;73:64-74. doi: 10.1016/j.jhevol.2014.02.021. Epub 2014 Jun 13.


From cultural traditions to cumulative culture: parameterizing the differences between human and nonhuman culture.

Kempe M, Lycett SJ, Mesoudi A.

J Theor Biol. 2014 Oct 21;359:29-36. doi: 10.1016/j.jtbi.2014.05.046. Epub 2014 Jun 10.


Considering the role of time budgets on copy-error rates in material culture traditions: an experimental assessment.

Schillinger K, Mesoudi A, Lycett SJ.

PLoS One. 2014 May 8;9(5):e97157. doi: 10.1371/journal.pone.0097157. eCollection 2014.


Supersize me: how whole-genome sequencing and big data are transforming epidemiology.

Kao RR, Haydon DT, Lycett SJ, Murcia PR.

Trends Microbiol. 2014 May;22(5):282-91. doi: 10.1016/j.tim.2014.02.011. Epub 2014 Mar 22. Review.


Reassortment patterns of avian influenza virus internal segments among different subtypes.

Lu L, Lycett SJ, Leigh Brown AJ.

BMC Evol Biol. 2014 Jan 24;14:16. doi: 10.1186/1471-2148-14-16.


Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza.

Ward MJ, Lycett SJ, Avila D, Bollback JP, Leigh Brown AJ.

BMC Evol Biol. 2013 Oct 9;13:222. doi: 10.1186/1471-2148-13-222.


The genesis and source of the H7N9 influenza viruses causing human infections in China.

Lam TT, Wang J, Shen Y, Zhou B, Duan L, Cheung CL, Ma C, Lycett SJ, Leung CY, Chen X, Li L, Hong W, Chai Y, Zhou L, Liang H, Ou Z, Liu Y, Farooqui A, Kelvin DJ, Poon LL, Smith DK, Pybus OG, Leung GM, Shu Y, Webster RG, Webby RJ, Peiris JS, Rambaut A, Zhu H, Guan Y.

Nature. 2013 Oct 10;502(7470):241-4. doi: 10.1038/nature12515. Epub 2013 Aug 21.


Real-time characterization of the molecular epidemiology of an influenza pandemic.

Hedge J, Lycett SJ, Rambaut A.

Biol Lett. 2013 Jul 24;9(5):20130331. doi: 10.1098/rsbl.2013.0331. Print 2013 Oct 23.


Understanding the comparative catarrhine context of human pelvic form: a 3D geometric morphometric analysis.

Lycett SJ, von Cramon-Taubadel N.

J Hum Evol. 2013 Apr;64(4):300-10. doi: 10.1016/j.jhevol.2013.01.011. Epub 2013 Feb 26.


Global geometric morphometric analyses of the human pelvis reveal substantial neutral population history effects, even across sexes.

Betti L, von Cramon-Taubadel N, Manica A, Lycett SJ.

PLoS One. 2013;8(2):e55909. doi: 10.1371/journal.pone.0055909. Epub 2013 Feb 7.


The evolutionary dynamics of influenza A virus adaptation to mammalian hosts.

Bhatt S, Lam TT, Lycett SJ, Leigh Brown AJ, Bowden TA, Holmes EC, Guan Y, Wood JL, Brown IH, Kellam P; Combating Swine Influenza Consortium, Pybus OG.

Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120382. doi: 10.1098/rstb.2012.0382. Print 2013 Mar 19.


Estimating the rate of intersubtype recombination in early HIV-1 group M strains.

Ward MJ, Lycett SJ, Kalish ML, Rambaut A, Leigh Brown AJ.

J Virol. 2013 Feb;87(4):1967-73. doi: 10.1128/JVI.02478-12. Epub 2012 Dec 12.


Investigation of influenza virus polymerase activity in pig cells.

Moncorgé O, Long JS, Cauldwell AV, Zhou H, Lycett SJ, Barclay WS.

J Virol. 2013 Jan;87(1):384-94. doi: 10.1128/JVI.01633-12. Epub 2012 Oct 17.


Late Pleistocene climate change and the global expansion of anatomically modern humans.

Eriksson A, Betti L, Friend AD, Lycett SJ, Singarayer JS, von Cramon-Taubadel N, Valdes PJ, Balloux F, Manica A.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16089-94. doi: 10.1073/pnas.1209494109. Epub 2012 Sep 17.


Estimating reassortment rates in co-circulating Eurasian swine influenza viruses.

Lycett SJ, Baillie G, Coulter E, Bhatt S, Kellam P, McCauley JW, Wood JL, Brown IH, Pybus OG, Leigh Brown AJ; Combating Swine Influenza Initiative-COSI Consortium.

J Gen Virol. 2012 Nov;93(Pt 11):2326-36. doi: 10.1099/vir.0.044503-0. Epub 2012 Sep 12.


Human pelvis and long bones reveal differential preservation of ancient population history and migration out of Africa.

Betti L, Cramon-Taubadel NV, Lycett SJ.

Hum Biol. 2012 Apr;84(2):139-52. doi: 10.3378/027.084.0203.


Comparison of handaxes from Bose Basin (China) and the western Acheulean indicates convergence of form, not cognitive differences.

Wang W, Lycett SJ, von Cramon-Taubadel N, Jin JJ, Bae CJ.

PLoS One. 2012;7(4):e35804. doi: 10.1371/journal.pone.0035804. Epub 2012 Apr 19.


Why Levallois? A morphometric comparison of experimental 'preferential' Levallois flakes versus debitage flakes.

Eren MI, Lycett SJ.

PLoS One. 2012;7(1):e29273. doi: 10.1371/journal.pone.0029273. Epub 2012 Jan 23.


Transmission network parameters estimated from HIV sequences for a nationwide epidemic.

Leigh Brown AJ, Lycett SJ, Weinert L, Hughes GJ, Fearnhill E, Dunn DT; UK HIV Drug Resistance Collaboration.

J Infect Dis. 2011 Nov;204(9):1463-9. doi: 10.1093/infdis/jir550. Epub 2011 Sep 15.


Correlations between genetic and behavioural dissimilarities in wild chimpanzees (Pan troglodytes) do not undermine the case for culture.

Lycett SJ, Collard M, McGrew WC.

Proc Biol Sci. 2011 Jul 22;278(1715):2091-3; discussion 2094-5. doi: 10.1098/rspb.2010.2599. Epub 2011 Apr 13. No abstract available.


Are behavioral differences among wild chimpanzee communities genetic or cultural? An assessment using tool-use data and phylogenetic methods.

Lycett SJ, Collard M, McGrew WC.

Am J Phys Anthropol. 2010 Jul;142(3):461-7. doi: 10.1002/ajpa.21249.


Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom.

Hughes GJ, Fearnhill E, Dunn D, Lycett SJ, Rambaut A, Leigh Brown AJ; UK HIV Drug Resistance Collaboration.

PLoS Pathog. 2009 Sep;5(9):e1000590. doi: 10.1371/journal.ppat.1000590. Epub 2009 Sep 25.


Cladistic analyses of behavioural variation in wild Pan troglodytes: exploring the chimpanzee culture hypothesis.

Lycett SJ, Collard M, McGrew WC.

J Hum Evol. 2009 Oct;57(4):337-49. doi: 10.1016/j.jhevol.2009.05.015. Epub 2009 Sep 17.


Detection of mammalian virulence determinants in highly pathogenic avian influenza H5N1 viruses: multivariate analysis of published data.

Lycett SJ, Ward MJ, Lewis FI, Poon AF, Kosakovsky Pond SL, Brown AJ.

J Virol. 2009 Oct;83(19):9901-10. doi: 10.1128/JVI.00608-09. Epub 2009 Jul 22.


Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.

Smith GJ, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JS, Guan Y, Rambaut A.

Nature. 2009 Jun 25;459(7250):1122-5. doi: 10.1038/nature08182.


Are Victoria West cores "proto-Levallois"? A phylogenetic assessment.

Lycett SJ.

J Hum Evol. 2009 Feb;56(2):175-91. doi: 10.1016/j.jhevol.2008.10.001. Epub 2008 Dec 4.


Brief communication: human cranial variation fits iterative founder effect model with African origin.

von Cramon-Taubadel N, Lycett SJ.

Am J Phys Anthropol. 2008 May;136(1):108-13.


Phylogenetic analyses of behavior support existence of culture among wild chimpanzees.

Lycett SJ, Collard M, McGrew WC.

Proc Natl Acad Sci U S A. 2007 Nov 6;104(45):17588-92. Epub 2007 Oct 29.


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