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Items: 44

1.

Profiles of enzyme activities, production of oxalic acid, and Fe3+-reducing metabolites secreted by the Polyporales brown-rot species Fomitopsis pinicola.

Shah F, Mali T, Lundell TK.

Appl Environ Microbiol. 2018 Feb 9. pii: AEM.02662-17. doi: 10.1128/AEM.02662-17. [Epub ahead of print]

PMID:
29439983
2.

Interactions affect hyphal growth and enzyme profiles in combinations of coniferous wood-decaying fungi of Agaricomycetes.

Mali T, Kuuskeri J, Shah F, Lundell TK.

PLoS One. 2017 Sep 27;12(9):e0185171. doi: 10.1371/journal.pone.0185171. eCollection 2017.

3.

Single-step, single-organism bioethanol production and bioconversion of lignocellulose waste materials by phlebioid fungal species.

Mattila H, Kuuskeri J, Lundell T.

Bioresour Technol. 2017 Feb;225:254-261. doi: 10.1016/j.biortech.2016.11.082. Epub 2016 Nov 22.

PMID:
27898315
4.

Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose.

Kuuskeri J, Häkkinen M, Laine P, Smolander OP, Tamene F, Miettinen S, Nousiainen P, Kemell M, Auvinen P, Lundell T.

Biotechnol Biofuels. 2016 Sep 5;9(1):192. doi: 10.1186/s13068-016-0608-9. eCollection 2016.

5.

Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota).

Kuuskeri J, Mäkelä MR, Isotalo J, Oksanen I, Lundell T.

BMC Microbiol. 2015 Oct 19;15:217. doi: 10.1186/s12866-015-0538-x.

6.

Neurog1 Genetic Inducible Fate Mapping (GIFM) Reveals the Existence of Complex Spatiotemporal Cyto-Architectures in the Developing Cerebellum.

Obana EA, Lundell TG, Yi KJ, Radomski KL, Zhou Q, Doughty ML.

Cerebellum. 2015 Jun;14(3):247-63. doi: 10.1007/s12311-014-0641-9.

PMID:
25592069
7.

Mitochondrial genome of Phlebia radiata is the second largest (156 kbp) among fungi and features signs of genome flexibility and recent recombination events.

Salavirta H, Oksanen I, Kuuskeri J, Mäkelä M, Laine P, Paulin L, Lundell T.

PLoS One. 2014 May 13;9(5):e97141. doi: 10.1371/journal.pone.0097141. eCollection 2014.

8.

Biochemical and molecular characterization of an atypical manganese peroxidase of the litter-decomposing fungus Agrocybe praecox.

Hildén K, Mäkelä MR, Steffen KT, Hofrichter M, Hatakka A, Archer DB, Lundell TK.

Fungal Genet Biol. 2014 Nov;72:131-136. doi: 10.1016/j.fgb.2014.03.002. Epub 2014 Mar 20.

PMID:
24657475
9.

Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes.

Ruiz-Dueñas FJ, Lundell T, Floudas D, Nagy LG, Barrasa JM, Hibbett DS, Martínez AT.

Mycologia. 2013 Nov-Dec;105(6):1428-44. doi: 10.3852/13-059. Epub 2013 Aug 6.

PMID:
23921235
10.

Genes associated with lignin degradation in the polyphagous white-rot pathogen Heterobasidion irregulare show substrate-specific regulation.

Yakovlev IA, Hietala AM, Courty PE, Lundell T, Solheim H, Fossdal CG.

Fungal Genet Biol. 2013 Jul;56:17-24. doi: 10.1016/j.fgb.2013.04.011. Epub 2013 May 9.

PMID:
23665189
11.

Agaricus bisporus and related Agaricus species on lignocellulose: production of manganese peroxidase and multicopper oxidases.

Hildén K, Mäkelä MR, Lankinen P, Lundell T.

Fungal Genet Biol. 2013 Jun;55:32-41. doi: 10.1016/j.fgb.2013.02.002. Epub 2013 Feb 21.

PMID:
23454218
12.

Effect of copper, nutrient nitrogen, and wood-supplement on the production of lignin-modifying enzymes by the white-rot fungus Phlebia radiata.

Mäkelä MR, Lundell T, Hatakka A, Hildén K.

Fungal Biol. 2013 Jan;117(1):62-70. doi: 10.1016/j.funbio.2012.11.006. Epub 2012 Dec 13.

PMID:
23332834
13.

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.

Morin E, Kohler A, Baker AR, Foulongne-Oriol M, Lombard V, Nagy LG, Ohm RA, Patyshakuliyeva A, Brun A, Aerts AL, Bailey AM, Billette C, Coutinho PM, Deakin G, Doddapaneni H, Floudas D, Grimwood J, Hildén K, Kües U, Labutti KM, Lapidus A, Lindquist EA, Lucas SM, Murat C, Riley RW, Salamov AA, Schmutz J, Subramanian V, Wösten HA, Xu J, Eastwood DC, Foster GD, Sonnenberg AS, Cullen D, de Vries RP, Lundell T, Hibbett DS, Henrissat B, Burton KS, Kerrigan RW, Challen MP, Grigoriev IV, Martin F.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17501-6. doi: 10.1073/pnas.1206847109. Epub 2012 Oct 8. Erratum in: Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):4146.

14.

The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.

Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Kohler A, Kües U, Kumar TK, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lombard V, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nagy LG, Nolan M, Ohm RA, Patyshakuliyeva A, Rokas A, Ruiz-Dueñas FJ, Sabat G, Salamov A, Samejima M, Schmutz J, Slot JC, St John F, Stenlid J, Sun H, Sun S, Syed K, Tsang A, Wiebenga A, Young D, Pisabarro A, Eastwood DC, Martin F, Cullen D, Grigoriev IV, Hibbett DS.

Science. 2012 Jun 29;336(6089):1715-9. doi: 10.1126/science.1221748.

15.

Heterologous expression and structural characterization of two low pH laccases from a biopulping white-rot fungus Physisporinus rivulosus.

Hildén K, Mäkelä MR, Lundell T, Kuuskeri J, Chernykh A, Golovleva L, Archer DB, Hatakka A.

Appl Microbiol Biotechnol. 2013 Feb;97(4):1589-99. doi: 10.1007/s00253-012-4011-6. Epub 2012 Apr 12.

PMID:
22526780
16.

Altered gene expression in the emerging cerebellar primordium of Neurog1-/- mice.

Dalgard CL, Zhou Q, Lundell TG, Doughty ML.

Brain Res. 2011 May 4;1388:12-21. doi: 10.1016/j.brainres.2011.02.087. Epub 2011 Mar 5.

PMID:
21382351
17.

New and classic families of secreted fungal heme peroxidases.

Hofrichter M, Ullrich R, Pecyna MJ, Liers C, Lundell T.

Appl Microbiol Biotechnol. 2010 Jul;87(3):871-97. doi: 10.1007/s00253-010-2633-0. Epub 2010 May 22. Review.

PMID:
20495915
18.

Oxalate decarboxylase: biotechnological update and prevalence of the enzyme in filamentous fungi.

Mäkelä MR, Hildén K, Lundell TK.

Appl Microbiol Biotechnol. 2010 Jul;87(3):801-14. doi: 10.1007/s00253-010-2650-z. Epub 2010 May 13. Review.

PMID:
20464388
19.

Lignin-modifying enzymes in filamentous basidiomycetes--ecological, functional and phylogenetic review.

Lundell TK, Mäkelä MR, Hildén K.

J Basic Microbiol. 2010 Feb;50(1):5-20. doi: 10.1002/jobm.200900338. Review.

PMID:
20175122
20.

Neurogenin1 expression in cell lineages of the cerebellar cortex in embryonic and postnatal mice.

Lundell TG, Zhou Q, Doughty ML.

Dev Dyn. 2009 Dec;238(12):3310-25. doi: 10.1002/dvdy.22165.

21.

Oxalate decarboxylase of the white-rot fungus Dichomitus squalens demonstrates a novel enzyme primary structure and non-induced expression on wood and in liquid cultures.

Mäkelä MR, Hildén K, Hatakka A, Lundell TK.

Microbiology. 2009 Aug;155(Pt 8):2726-38. doi: 10.1099/mic.0.028860-0. Epub 2009 Apr 23.

PMID:
19389757
22.

Thermotolerant and thermostable laccases.

Hildén K, Hakala TK, Lundell T.

Biotechnol Lett. 2009 Aug;31(8):1117-28. doi: 10.1007/s10529-009-9998-0. Epub 2009 Apr 10. Review.

PMID:
19360388
23.

Molecular characterization of the basidiomycete isolate Nematoloma frowardii b19 and its manganese peroxidase places the fungus in the corticioid genus Phlebia.

Hildén KS, Bortfeldt R, Hofrichter M, Hatakka A, Lundell TK.

Microbiology. 2008 Aug;154(Pt 8):2371-9. doi: 10.1099/mic.0.2008/018747-0.

PMID:
18667569
24.

Novel thermotolerant laccases produced by the white-rot fungus Physisporinus rivulosus.

Hildén K, Hakala TK, Maijala P, Lundell TK, Hatakka A.

Appl Microbiol Biotechnol. 2007 Nov;77(2):301-9. Epub 2007 Sep 6.

PMID:
17805527
25.

Mineral variability among 177 commercial noni juices.

West BJ, Tolson CB, Vest RG, Jensen S, Lundell TG.

Int J Food Sci Nutr. 2006 Nov-Dec;57(7-8):556-8.

PMID:
17162334
26.

Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning.

Soeria-Atmadja D, Lundell T, Gustafsson MG, Hammerling U.

Nucleic Acids Res. 2006;34(13):3779-93. Epub 2006 Aug 23.

27.

Expression and molecular properties of a new laccase of the white rot fungus Phlebia radiata grown on wood.

Mäkelä MR, Hildén KS, Hakala TK, Hatakka A, Lundell TK.

Curr Genet. 2006 Nov;50(5):323-33. Epub 2006 Aug 23.

PMID:
16927090
28.

Cloning, characterization and localization of three novel class III peroxidases in lignifying xylem of Norway spruce (Picea abies).

Marjamaa K, Hildén K, Kukkola E, Lehtonen M, Holkeri H, Haapaniemi P, Koutaniemi S, Teeri TH, Fagerstedt K, Lundell T.

Plant Mol Biol. 2006 Jul;61(4-5):719-32.

PMID:
16897487
29.

Monolignol oxidation by xylem peroxidase isoforms of Norway spruce (Picea abies) and silver birch (Betula pendula).

Marjamaa K, Kukkola E, Lundell T, Karhunen P, Saranpää P, Fagerstedt KV.

Tree Physiol. 2006 May;26(5):605-11.

PMID:
16452074
30.

Expression on wood, molecular cloning and characterization of three lignin peroxidase (LiP) encoding genes of the white rot fungus Phlebia radiata.

Hildén KS, Mäkelä MR, Hakala TK, Hatakka A, Lundell T.

Curr Genet. 2006 Feb;49(2):97-105. Epub 2005 Dec 7.

PMID:
16333658
31.

Characterization of basic p-coumaryl and coniferyl alcohol oxidizing peroxidases from a lignin-forming Picea abies suspension culture.

Koutaniemi S, Toikka MM, Kärkönen A, Mustonen M, Lundell T, Simola LK, Kilpeläinen IA, Teeri TH.

Plant Mol Biol. 2005 May;58(2):141-57.

PMID:
16027971
32.
33.

A rapid method to quantify pro-oxidant activity in cultures of wood-decaying white-rot fungi.

Kapich AN, Prior BA, Lundell T, Hatakka A.

J Microbiol Methods. 2005 May;61(2):261-71. Epub 2005 Jan 11.

PMID:
15722153
34.

Mutagenicity and DNA repair of glycidamide-induced adducts in mammalian cells.

Johansson F, Lundell T, Rydberg P, Erixon K, Jenssen D.

Mutat Res. 2005 Feb 7;580(1-2):81-9.

PMID:
15668110
35.

The dibenzodioxocin lignin substructure is abundant in the inner part of the secondary wall in Norway spruce and silver birch xylem.

Kukkola EM, Koutaniemi S, Pöllänen E, Gustafsson M, Karhunen P, Lundell TK, Saranpää P, Kilpeläinen I, Teeri TH, Fagerstedt KV.

Planta. 2004 Jan;218(3):497-500. Epub 2003 Sep 12.

PMID:
13680231
36.

Developmental lignification and seasonal variation in beta-glucosidase and peroxidase activities in xylem of Scots pine, Norway spruce and silver birch.

Marjamaa K, Lehtonen M, Lundell T, Toikka M, Saranpää P, Fagerstedt KV.

Tree Physiol. 2003 Oct;23(14):977-86.

PMID:
12952784
37.

Localization of dibenzodioxocin substructures in lignifying Norway spruce xylem by transmission electron microscopy-immunogold labeling.

Kukkola EM, Koutaniemi S, Gustafsson M, Karhunen P, Ruel K, Lundell TK, Saranpää P, Brunow G, Teeri TH, Fagerstedt KV.

Planta. 2003 Jun;217(2):229-37. Epub 2003 Mar 19.

PMID:
12783330
38.

Conversion of milled pine wood by manganese peroxidase from Phlebia radiata.

Hofrichter M, Lundell T, Hatakka A.

Appl Environ Microbiol. 2001 Oct;67(10):4588-93.

39.

The manganese binding site of manganese peroxidase: characterization of an Asp179Asn site-directed mutant protein.

Kusters-van Someren M, Kishi K, Lundell T, Gold MH.

Biochemistry. 1995 Aug 22;34(33):10620-7.

PMID:
7654716
41.

Do carbohydrates play a role in the lignin peroxidase cycle? Redox catalysis in the endergonic region of the driving force.

Schoemaker HE, Lundell TK, Floris R, Glumoff T, Winterhalter KH, Piontek K.

Bioorg Med Chem. 1994 Jun;2(6):509-19.

PMID:
8000874
43.

Catalytic mechanisms and regulation of lignin peroxidase.

Harvey PJ, Floris R, Lundell T, Palmer JM, Schoemaker HE, Wever R.

Biochem Soc Trans. 1992 May;20(2):345-9. Review.

PMID:
1397627
44.

Formation and Action of Lignin-Modifying Enzymes in Cultures of Phlebia radiata Supplemented with Veratric Acid.

Lundell T, Leonowicz A, Rogalski J, Hatakka A.

Appl Environ Microbiol. 1990 Sep;56(9):2623-9.

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