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Items: 1 to 50 of 165

1.

CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients.

Komech EA, Pogorelyy MV, Egorov ES, Britanova OV, Rebrikov DV, Bochkova AG, Shmidt EI, Shostak NA, Shugay M, Lukyanov S, Mamedov IZ, Lebedev YB, Chudakov DM, Zvyagin IV.

Rheumatology (Oxford). 2018 Feb 22. doi: 10.1093/rheumatology/kex517. [Epub ahead of print]

PMID:
29481668
2.

Protein labeling for live cell fluorescence microscopy with a highly photostable renewable signal.

Bozhanova NG, Baranov MS, Klementieva NV, Sarkisyan KS, Gavrikov AS, Yampolsky IV, Zagaynova EV, Lukyanov SA, Lukyanov KA, Mishin AS.

Chem Sci. 2017 Oct 1;8(10):7138-7142. doi: 10.1039/c7sc01628j. Epub 2017 Aug 3.

3.

Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries.

Shagin DA, Turchaninova MA, Shagina IA, Shugay M, Zaretsky AR, Zueva OI, Bolotin DA, Lukyanov S, Chudakov DM.

BMC Genomics. 2017 Jun 5;18(1):440. doi: 10.1186/s12864-017-3815-2.

4.

A high-throughput assay for quantitative measurement of PCR errors.

Shagin DA, Shagina IA, Zaretsky AR, Barsova EV, Kelmanson IV, Lukyanov S, Chudakov DM, Shugay M.

Sci Rep. 2017 Jun 2;7(1):2718. doi: 10.1038/s41598-017-02727-8.

5.

Mechanism and color modulation of fungal bioluminescence.

Kaskova ZM, Dörr FA, Petushkov VN, Purtov KV, Tsarkova AS, Rodionova NS, Mineev KS, Guglya EB, Kotlobay A, Baleeva NS, Baranov MS, Arseniev AS, Gitelson JI, Lukyanov S, Suzuki Y, Kanie S, Pinto E, Di Mascio P, Waldenmaier HE, Pereira TA, Carvalho RP, Oliveira AG, Oba Y, Bastos EL, Stevani CV, Yampolsky IV.

Sci Adv. 2017 Apr 26;3(4):e1602847. doi: 10.1126/sciadv.1602847. eCollection 2017 Apr.

6.

MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.

Shugay M, Zaretsky AR, Shagin DA, Shagina IA, Volchenkov IA, Shelenkov AA, Lebedin MY, Bagaev DV, Lukyanov S, Chudakov DM.

PLoS Comput Biol. 2017 May 5;13(5):e1005480. doi: 10.1371/journal.pcbi.1005480. eCollection 2017 May.

7.

Intrinsic blinking of red fluorescent proteins for super-resolution microscopy.

Klementieva NV, Pavlikov AI, Moiseev AA, Bozhanova NG, Mishina NM, Lukyanov SA, Zagaynova EV, Lukyanov KA, Mishin AS.

Chem Commun (Camb). 2017 Jan 10;53(5):949-951. doi: 10.1039/c6cc09200d.

PMID:
28044165
8.

Green-to-red primed conversion of Dendra2 using blue and red lasers.

Klementieva NV, Lukyanov KA, Markina NM, Lukyanov SA, Zagaynova EV, Mishin AS.

Chem Commun (Camb). 2016 Nov 18;52(89):13144-13146. Epub 2016 Oct 20.

PMID:
27763646
9.

Lysosome-associated miniSOG as a photosensitizer for mammalian cells.

Ryumina AP, Serebrovskaya EO, Staroverov DB, Zlobovskaya OA, Shcheglov AS, Lukyanov SA, Lukyanov KA.

Biotechniques. 2016 Aug 1;61(2):92-4. doi: 10.2144/000114445. eCollection 2016.

10.

Soluble OX40L favors tumor rejection in CT26 colon carcinoma model.

Serebrovskaya EO, Yuzhakova DV, Ryumina AP, Druzhkova IN, Sharonov GV, Kotlobay AA, Zagaynova EV, Lukyanov SA, Shirmanova MV.

Cytokine. 2016 Aug;84:10-6. doi: 10.1016/j.cyto.2016.05.005. Epub 2016 May 17.

PMID:
27203665
11.

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians.

Britanova OV, Shugay M, Merzlyak EM, Staroverov DB, Putintseva EV, Turchaninova MA, Mamedov IZ, Pogorelyy MV, Bolotin DA, Izraelson M, Davydov AN, Egorov ES, Kasatskaya SA, Rebrikov DV, Lukyanov S, Chudakov DM.

J Immunol. 2016 Jun 15;196(12):5005-13. doi: 10.4049/jimmunol.1600005. Epub 2016 May 13.

12.

Towards PDT with Genetically Encoded Photosensitizer KillerRed: A Comparison of Continuous and Pulsed Laser Regimens in an Animal Tumor Model.

Shirmanova M, Yuzhakova D, Snopova L, Perelman G, Serebrovskaya E, Lukyanov K, Turchin I, Subochev P, Lukyanov S, Kamensky V, Zagaynova E.

PLoS One. 2015 Dec 11;10(12):e0144617. doi: 10.1371/journal.pone.0144617. eCollection 2015.

13.

[Main Cellular Redox Couples].

Bilan DS, Shokhina AG, Lukyanov SA, Belousov VV.

Bioorg Khim. 2015 Jul-Aug;41(4):385-402. Review. Russian.

PMID:
26615634
14.

Sequencing rare T-cell populations.

Shugay M, Lukyanov S, Chudakov DM.

Oncotarget. 2015 Nov 24;6(37):39393-4. doi: 10.18632/oncotarget.6349. No abstract available.

15.

[Genetically Encoded Fluorescent Redox Sensors].

Bilan DS, Lukyanov SA, Belousov VV.

Bioorg Khim. 2015 May-Jun;41(3):259-74. Review. Russian.

PMID:
26502603
16.

CT26 murine colon carcinoma expressing the red fluorescent protein KillerRed as a highly immunogenic tumor model.

Yuzhakova DV, Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Druzhkova IN, Shakhov BE, Lukyanov SA, Zagaynova EV.

J Biomed Opt. 2015 Aug;20(8):88002. doi: 10.1117/1.JBO.20.8.088002.

PMID:
26277828
17.

Fluorescent ratiometric pH indicator SypHer2: Applications in neuroscience and regenerative biology.

Matlashov ME, Bogdanova YA, Ermakova GV, Mishina NM, Ermakova YG, Nikitin ES, Balaban PM, Okabe S, Lukyanov S, Enikolopov G, Zaraisky AG, Belousov VV.

Biochim Biophys Acta. 2015 Nov;1850(11):2318-28. doi: 10.1016/j.bbagen.2015.08.002. Epub 2015 Aug 8.

18.

The Chemical Basis of Fungal Bioluminescence.

Purtov KV, Petushkov VN, Baranov MS, Mineev KS, Rodionova NS, Kaskova ZM, Tsarkova AS, Petunin AI, Bondar VS, Rodicheva EK, Medvedeva SE, Oba Y, Oba Y, Arseniev AS, Lukyanov S, Gitelson JI, Yampolsky IV.

Angew Chem Int Ed Engl. 2015 Jul 6;54(28):8124-8. doi: 10.1002/anie.201501779. Epub 2015 Jun 11.

PMID:
26094784
19.

Intracellular pH imaging in cancer cells in vitro and tumors in vivo using the new genetically encoded sensor SypHer2.

Shirmanova MV, Druzhkova IN, Lukina MM, Matlashov ME, Belousov VV, Snopova LB, Prodanetz NN, Dudenkova VV, Lukyanov SA, Zagaynova EV.

Biochim Biophys Acta. 2015 Sep;1850(9):1905-11. doi: 10.1016/j.bbagen.2015.05.001. Epub 2015 May 8.

PMID:
25964069
20.

Live-Cell STED Microscopy with Genetically Encoded Biosensor.

Mishina NM, Mishin AS, Belyaev Y, Bogdanova EA, Lukyanov S, Schultz C, Belousov VV.

Nano Lett. 2015 May 13;15(5):2928-32. doi: 10.1021/nl504710z. Epub 2015 Apr 17.

PMID:
25871892
21.

Exact overlaps in the Kondo problem.

Lukyanov SL, Saleur H, Jacobsen JL, Vasseur R.

Phys Rev Lett. 2015 Feb 27;114(8):080601. Epub 2015 Feb 24.

PMID:
25768744
22.

Photobleaching and phototoxicity of KillerRed in tumor spheroids induced by continuous wave and pulsed laser illumination.

Kuznetsova DS, Shirmanova MV, Dudenkova VV, Subochev PV, Turchin IV, Zagaynova EV, Lukyanov SA, Shakhov BE, Kamensky VA.

J Biophotonics. 2015 Nov;8(11-12):952-60. doi: 10.1002/jbio.201400130. Epub 2015 Feb 3.

PMID:
25648724
23.

Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level.

Pereverzev AP, Gurskaya NG, Ermakova GV, Kudryavtseva EI, Markina NM, Kotlobay AA, Lukyanov SA, Zaraisky AG, Lukyanov KA.

Sci Rep. 2015 Jan 12;5:7729. doi: 10.1038/srep07729.

24.

Red-shifted fluorescent aminated derivatives of a conformationally locked GFP chromophore.

Baranov MS, Solntsev KM, Baleeva NS, Mishin AS, Lukyanov SA, Lukyanov KA, Yampolsky IV.

Chemistry. 2014 Oct 6;20(41):13234-41. doi: 10.1002/chem.201403678. Epub 2014 Aug 29.

PMID:
25171432
25.

Structure reconstruction of TiO2-based multi-wall nanotubes: first-principles calculations.

Bandura AV, Evarestov RA, Lukyanov SI.

Phys Chem Chem Phys. 2014 Jul 28;16(28):14781-91. doi: 10.1039/c4cp00903g.

PMID:
24922363
26.

Towards error-free profiling of immune repertoires.

Shugay M, Britanova OV, Merzlyak EM, Turchaninova MA, Mamedov IZ, Tuganbaev TR, Bolotin DA, Staroverov DB, Putintseva EV, Plevova K, Linnemann C, Shagin D, Pospisilova S, Lukyanov S, Schumacher TN, Chudakov DM.

Nat Methods. 2014 Jun;11(6):653-5. doi: 10.1038/nmeth.2960. Epub 2014 May 4.

PMID:
24793455
27.

Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling.

Britanova OV, Putintseva EV, Shugay M, Merzlyak EM, Turchaninova MA, Staroverov DB, Bolotin DA, Lukyanov S, Bogdanova EA, Mamedov IZ, Lebedev YB, Chudakov DM.

J Immunol. 2014 Mar 15;192(6):2689-98. doi: 10.4049/jimmunol.1302064. Epub 2014 Feb 7.

28.

Phototoxic effects of lysosome-associated genetically encoded photosensitizer KillerRed.

Serebrovskaya EO, Ryumina AP, Boulina ME, Shirmanova MV, Zagaynova EV, Bogdanova EA, Lukyanov SA, Lukyanov KA.

J Biomed Opt. 2014 Jul;19(7):071403. doi: 10.1117/1.JBO.19.7.071403.

PMID:
24365992
29.

Genetically encoded immunophotosensitizer 4D5scFv-miniSOG is a highly selective agent for targeted photokilling of tumor cells in vitro.

Mironova KE, Proshkina GM, Ryabova AV, Stremovskiy OA, Lukyanov SA, Petrov RV, Deyev SM.

Theranostics. 2013 Oct 12;3(11):831-40. doi: 10.7150/thno.6715. eCollection 2013.

30.

Flavoprotein miniSOG as a genetically encoded photosensitizer for cancer cells.

Ryumina AP, Serebrovskaya EO, Shirmanova MV, Snopova LB, Kuznetsova MM, Turchin IV, Ignatova NI, Klementieva NV, Fradkov AF, Shakhov BE, Zagaynova EV, Lukyanov KA, Lukyanov SA.

Biochim Biophys Acta. 2013 Nov;1830(11):5059-67. doi: 10.1016/j.bbagen.2013.07.015. Epub 2013 Jul 20.

PMID:
23876295
31.

Imaging H2O2 microdomains in receptor tyrosine kinases signaling.

Mishina NM, Markvicheva KN, Fradkov AF, Zagaynova EV, Schultz C, Lukyanov S, Belousov VV.

Methods Enzymol. 2013;526:175-87. doi: 10.1016/B978-0-12-405883-5.00011-9.

PMID:
23791101
32.

Visualization of intracellular hydrogen peroxide with HyPer, a genetically encoded fluorescent probe.

Mishina NM, Markvicheva KN, Bilan DS, Matlashov ME, Shirmanova MV, Liebl D, Schultz C, Lukyanov S, Belousov VV.

Methods Enzymol. 2013;526:45-59. doi: 10.1016/B978-0-12-405883-5.00003-X.

PMID:
23791093
33.

Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis.

Pletneva NV, Pletnev VZ, Souslova E, Chudakov DM, Lukyanov S, Martynov VI, Arhipova S, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.

Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1005-12. doi: 10.1107/S0907444913004034. Epub 2013 May 11.

34.

HyPer-3: a genetically encoded H(2)O(2) probe with improved performance for ratiometric and fluorescence lifetime imaging.

Bilan DS, Pase L, Joosen L, Gorokhovatsky AY, Ermakova YG, Gadella TW, Grabher C, Schultz C, Lukyanov S, Belousov VV.

ACS Chem Biol. 2013 Mar 15;8(3):535-42. doi: 10.1021/cb300625g. Epub 2013 Jan 7.

PMID:
23256573
35.

A monomeric red fluorescent protein with low cytotoxicity.

Shemiakina II, Ermakova GV, Cranfill PJ, Baird MA, Evans RA, Souslova EA, Staroverov DB, Gorokhovatsky AY, Putintseva EV, Gorodnicheva TV, Chepurnykh TV, Strukova L, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM, Shcherbo D.

Nat Commun. 2012;3:1204. doi: 10.1038/ncomms2208.

PMID:
23149748
36.

Unveiling the intruder deformed 02(+) state in 34Si.

Rotaru F, Negoita F, Grévy S, Mrazek J, Lukyanov S, Nowacki F, Poves A, Sorlin O, Borcea C, Borcea R, Buta A, Cáceres L, Calinescu S, Chevrier R, Dombrádi Z, Daugas JM, Lebhertz D, Penionzhkevich Y, Petrone C, Sohler D, Stanoiu M, Thomas JC.

Phys Rev Lett. 2012 Aug 31;109(9):092503. Epub 2012 Aug 29.

PMID:
23002828
37.

Structural basis for bathochromic shift of fluorescence in far-red fluorescent proteins eqFP650 and eqFP670.

Pletnev S, Pletneva NV, Souslova EA, Chudakov DM, Lukyanov S, Wlodawer A, Dauter Z, Pletnev V.

Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1088-97. doi: 10.1107/S0907444912020598. Epub 2012 Aug 18.

38.

Tryptophan-based chromophore in fluorescent proteins can be anionic.

Sarkisyan KS, Yampolsky IV, Solntsev KM, Lukyanov SA, Lukyanov KA, Mishin AS.

Sci Rep. 2012;2:608. doi: 10.1038/srep00608. Epub 2012 Aug 29.

39.

Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

Bolotin DA, Mamedov IZ, Britanova OV, Zvyagin IV, Shagin D, Ustyugova SV, Turchaninova MA, Lukyanov S, Lebedev YB, Chudakov DM.

Eur J Immunol. 2012 Nov;42(11):3073-83. doi: 10.1002/eji.201242517. Epub 2012 Sep 24.

40.

Phototoxic effects of fluorescent protein KillerRed on tumor cells in mice.

Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Snopova LB, Sirotkina MA, Prodanetz NN, Bugrova ML, Minakova EA, Turchin IV, Kamensky VA, Lukyanov SA, Zagaynova EV.

J Biophotonics. 2013 Mar;6(3):283-90. doi: 10.1002/jbio.201200056. Epub 2012 Jun 13.

PMID:
22696211
41.

First autologous hematopoietic SCT for ankylosing spondylitis: a case report and clues to understanding the therapy.

Britanova OV, Bochkova AG, Staroverov DB, Fedorenko DA, Bolotin DA, Mamedov IZ, Turchaninova MA, Putintseva EV, Kotlobay AA, Lukyanov S, Novik AA, Lebedev YB, Chudakov DM.

Bone Marrow Transplant. 2012 Nov;47(11):1479-81. doi: 10.1038/bmt.2012.44. Epub 2012 Mar 12. No abstract available.

PMID:
22410749
42.

Can we see PIP(3) and hydrogen peroxide with a single probe?

Mishina NM, Bogeski I, Bolotin DA, Hoth M, Niemeyer BA, Schultz C, Zagaynova EV, Lukyanov S, Belousov VV.

Antioxid Redox Signal. 2012 Aug 1;17(3):505-12. doi: 10.1089/ars.2012.4574. Epub 2012 Apr 10.

PMID:
22369174
43.

Molecular mechanism of a green-shifted, pH-dependent red fluorescent protein mKate variant.

Wang Q, Byrnes LJ, Shui B, Röhrig UF, Singh A, Chudakov DM, Lukyanov S, Zipfel WR, Kotlikoff MI, Sondermann H.

PLoS One. 2011;6(8):e23513. doi: 10.1371/journal.pone.0023513. Epub 2011 Aug 22.

44.

Ground-state proton decay of 69Br and implications for the 68Se astrophysical rapid proton-capture process waiting point.

Rogers AM, Famiano MA, Lynch WG, Wallace MS, Amorini F, Bazin D, Charity RJ, Delaunay F, de Souza RT, Elson J, Gade A, Galaviz D, van Goethem MJ, Hudan S, Lee J, Lobastov S, Lukyanov S, Matoš M, Mocko M, Schatz H, Shapira D, Sobotka LG, Tsang MB, Verde G.

Phys Rev Lett. 2011 Jun 24;106(25):252503. Epub 2011 Jun 24.

PMID:
21770637
45.

Circular permutation of red fluorescent proteins.

Shui B, Wang Q, Lee F, Byrnes LJ, Chudakov DM, Lukyanov SA, Sondermann H, Kotlikoff MI.

PLoS One. 2011;6(5):e20505. doi: 10.1371/journal.pone.0020505. Epub 2011 May 27.

46.

A synthetic GFP-like chromophore undergoes base-catalyzed autoxidation into acylimine red form.

Ivashkin PE, Lukyanov KA, Lukyanov S, Yampolsky IV.

J Org Chem. 2011 Apr 15;76(8):2782-91. doi: 10.1021/jo200150b. Epub 2011 Mar 22.

PMID:
21391723
47.

Quantitative tracking of T cell clones after haematopoietic stem cell transplantation.

Mamedov IZ, Britanova OV, Bolotin DA, Chkalina AV, Staroverov DB, Zvyagin IV, Kotlobay AA, Turchaninova MA, Fedorenko DA, Novik AA, Sharonov GV, Lukyanov S, Chudakov DM, Lebedev YB.

EMBO Mol Med. 2011 Apr;3(4):201-7. doi: 10.1002/emmm.201100129. Epub 2011 Mar 4.

48.

Normalization of full-length-enriched cDNA.

Bogdanova EA, Barsova EV, Shagina IA, Scheglov A, Anisimova V, Vagner LL, Lukyanov SA, Shagin DA.

Methods Mol Biol. 2011;729:85-98. doi: 10.1007/978-1-61779-065-2_6.

PMID:
21365485
49.

Visualizing compound transgenic zebrafish in development: a tale of green fluorescent protein and KillerRed.

Korzh V, Teh C, Kondrychyn I, Chudakov DM, Lukyanov S.

Zebrafish. 2011 Mar;8(1):23-9. doi: 10.1089/zeb.2011.0689. Epub 2011 Feb 24. Review.

PMID:
21348774
50.

Light-induced blockage of cell division with a chromatin-targeted phototoxic fluorescent protein.

Serebrovskaya EO, Gorodnicheva TV, Ermakova GV, Solovieva EA, Sharonov GV, Zagaynova EV, Chudakov DM, Lukyanov S, Zaraisky AG, Lukyanov KA.

Biochem J. 2011 Apr 1;435(1):65-71. doi: 10.1042/BJ20101217.

PMID:
21214518

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