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Items: 1 to 50 of 348

1.

Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.

Holmes DE, Orelana R, Giloteaux L, Wang LY, Shrestha P, Williams K, Lovley DR, Rotaru AE.

Microb Ecol. 2018 Mar 2. doi: 10.1007/s00248-018-1165-5. [Epub ahead of print]

PMID:
29500492
2.

Transcriptomic profiles of Clostridium ljungdahlii during lithotrophic growth with syngas or H2 and CO2 compared to organotrophic growth with fructose.

Aklujkar M, Leang C, Shrestha PM, Shrestha M, Lovley DR.

Sci Rep. 2017 Oct 13;7(1):13135. doi: 10.1038/s41598-017-12712-w.

3.

Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms.

Walker DJ, Adhikari RY, Holmes DE, Ward JE, Woodard TL, Nevin KP, Lovley DR.

ISME J. 2018 Jan;12(1):48-58. doi: 10.1038/ismej.2017.141. Epub 2017 Sep 5.

PMID:
28872631
4.

Syntrophy Goes Electric: Direct Interspecies Electron Transfer.

Lovley DR.

Annu Rev Microbiol. 2017 Sep 8;71:643-664. doi: 10.1146/annurev-micro-030117-020420. Epub 2017 Jul 11. Review.

PMID:
28697668
5.

e-Biologics: Fabrication of Sustainable Electronics with "Green" Biological Materials.

Lovley DR.

MBio. 2017 Jun 27;8(3). pii: e00695-17. doi: 10.1128/mBio.00695-17.

6.

Toward establishing minimum requirements for extracellular electron transfer in Geobacter sulfurreducens.

Ueki T, DiDonato LN, Lovley DR.

FEMS Microbiol Lett. 2017 May 1;364(9). doi: 10.1093/femsle/fnx093.

PMID:
28472266
7.

The electrically conductive pili of Geobacter species are a recently evolved feature for extracellular electron transfer.

Holmes DE, Dang Y, Walker DJ, Lovley DR.

Microb Genom. 2016 Aug 25;2(8):e000072. doi: 10.1099/mgen.0.000072. eCollection 2016 Aug.

8.

Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.

Holmes DE, Shrestha PM, Walker DJF, Dang Y, Nevin KP, Woodard TL, Lovley DR.

Appl Environ Microbiol. 2017 Apr 17;83(9). pii: e00223-17. doi: 10.1128/AEM.00223-17. Print 2017 May 1.

9.

Biofilm Formation by Clostridium ljungdahlii Is Induced by Sodium Chloride Stress: Experimental Evaluation and Transcriptome Analysis.

Philips J, Rabaey K, Lovley DR, Vargas M.

PLoS One. 2017 Jan 24;12(1):e0170406. doi: 10.1371/journal.pone.0170406. eCollection 2017.

10.

Expressing the Geobacter metallireducens PilA in Geobacter sulfurreducens Yields Pili with Exceptional Conductivity.

Tan Y, Adhikari RY, Malvankar NS, Ward JE, Woodard TL, Nevin KP, Lovley DR.

MBio. 2017 Jan 17;8(1). pii: e02203-16. doi: 10.1128/mBio.02203-16.

11.
12.

Reply to 'Measuring conductivity of living Geobacter sulfurreducens biofilms'.

Malvankar NS, Rotello VM, Tuominen MT, Lovley DR.

Nat Nanotechnol. 2016 Nov 8;11(11):913-914. doi: 10.1038/nnano.2016.191. No abstract available.

PMID:
27821844
13.

Happy together: microbial communities that hook up to swap electrons.

Lovley DR.

ISME J. 2017 Feb;11(2):327-336. doi: 10.1038/ismej.2016.136. Epub 2016 Nov 1. Review.

14.

Genetic switches and related tools for controlling gene expression and electrical outputs of Geobacter sulfurreducens.

Ueki T, Nevin KP, Woodard TL, Lovley DR.

J Ind Microbiol Biotechnol. 2016 Nov;43(11):1561-1575. Epub 2016 Sep 22.

PMID:
27659960
15.

Enhancing anaerobic digestion of complex organic waste with carbon-based conductive materials.

Dang Y, Holmes DE, Zhao Z, Woodard TL, Zhang Y, Sun D, Wang LY, Nevin KP, Lovley DR.

Bioresour Technol. 2016 Nov;220:516-522. doi: 10.1016/j.biortech.2016.08.114. Epub 2016 Sep 1.

PMID:
27611035
16.

The Low Conductivity of Geobacter uraniireducens Pili Suggests a Diversity of Extracellular Electron Transfer Mechanisms in the Genus Geobacter.

Tan Y, Adhikari RY, Malvankar NS, Ward JE, Nevin KP, Woodard TL, Smith JA, Snoeyenbos-West OL, Franks AE, Tuominen MT, Lovley DR.

Front Microbiol. 2016 Jun 28;7:980. doi: 10.3389/fmicb.2016.00980. eCollection 2016.

17.

Synthetic Biological Protein Nanowires with High Conductivity.

Tan Y, Adhikari RY, Malvankar NS, Pi S, Ward JE, Woodard TL, Nevin KP, Xia Q, Tuominen MT, Lovley DR.

Small. 2016 Sep;12(33):4481-5. doi: 10.1002/smll.201601112. Epub 2016 Jul 13.

PMID:
27409066
18.

Low Energy Atomic Models Suggesting a Pilus Structure that could Account for Electrical Conductivity of Geobacter sulfurreducens Pili.

Xiao K, Malvankar NS, Shu C, Martz E, Lovley DR, Sun X.

Sci Rep. 2016 Mar 22;6:23385. doi: 10.1038/srep23385.

19.

Expanding the Diet for DIET: Electron Donors Supporting Direct Interspecies Electron Transfer (DIET) in Defined Co-Cultures.

Wang LY, Nevin KP, Woodard TL, Mu BZ, Lovley DR.

Front Microbiol. 2016 Mar 1;7:236. doi: 10.3389/fmicb.2016.00236. eCollection 2016.

20.

Potential enhancement of direct interspecies electron transfer for syntrophic metabolism of propionate and butyrate with biochar in up-flow anaerobic sludge blanket reactors.

Zhao Z, Zhang Y, Holmes DE, Dang Y, Woodard TL, Nevin KP, Lovley DR.

Bioresour Technol. 2016 Jun;209:148-56. doi: 10.1016/j.biortech.2016.03.005. Epub 2016 Mar 5.

PMID:
26967338
21.

Link between capacity for current production and syntrophic growth in Geobacter species.

Rotaru AE, Woodard TL, Nevin KP, Lovley DR.

Front Microbiol. 2015 Jul 21;6:744. doi: 10.3389/fmicb.2015.00744. eCollection 2015.

22.

Functional environmental proteomics: elucidating the role of a c-type cytochrome abundant during uranium bioremediation.

Yun J, Malvankar NS, Ueki T, Lovley DR.

ISME J. 2016 Feb;10(2):310-20. doi: 10.1038/ismej.2015.113. Epub 2015 Jul 3.

23.

Protozoan grazing reduces the current output of microbial fuel cells.

Holmes DE, Nevin KP, Snoeyenbos-West OL, Woodard TL, Strickland JN, Lovley DR.

Bioresour Technol. 2015 Oct;193:8-14. doi: 10.1016/j.biortech.2015.06.056. Epub 2015 Jun 17.

24.

Simplifying microbial electrosynthesis reactor design.

Giddings CG, Nevin KP, Woodward T, Lovley DR, Butler CS.

Front Microbiol. 2015 May 15;6:468. doi: 10.3389/fmicb.2015.00468. eCollection 2015.

25.

Enhancing syntrophic metabolism in up-flow anaerobic sludge blanket reactors with conductive carbon materials.

Zhao Z, Zhang Y, Woodard TL, Nevin KP, Lovley DR.

Bioresour Technol. 2015 Sep;191:140-5. doi: 10.1016/j.biortech.2015.05.007. Epub 2015 May 12.

PMID:
25989089
26.

Syntrophic growth via quinone-mediated interspecies electron transfer.

Smith JA, Nevin KP, Lovley DR.

Front Microbiol. 2015 Feb 17;6:121. doi: 10.3389/fmicb.2015.00121. eCollection 2015.

27.

Structural basis for metallic-like conductivity in microbial nanowires.

Malvankar NS, Vargas M, Nevin K, Tremblay PL, Evans-Lutterodt K, Nykypanchuk D, Martz E, Tuominen MT, Lovley DR.

MBio. 2015 Mar 3;6(2):e00084. doi: 10.1128/mBio.00084-15.

28.

Real-time monitoring of subsurface microbial metabolism with graphite electrodes.

Wardman C, Nevin KP, Lovley DR.

Front Microbiol. 2014 Nov 21;5:621. doi: 10.3389/fmicb.2014.00621. eCollection 2014.

29.

Correlation between microbial community and granule conductivity in anaerobic bioreactors for brewery wastewater treatment.

Shrestha PM, Malvankar NS, Werner JJ, Franks AE, Elena-Rotaru A, Shrestha M, Liu F, Nevin KP, Angenent LT, Lovley DR.

Bioresour Technol. 2014 Dec;174:306-10. doi: 10.1016/j.biortech.2014.10.004. Epub 2014 Oct 8.

PMID:
25443621
30.

Seeing is believing: novel imaging techniques help clarify microbial nanowire structure and function.

Lovley DR, Malvankar NS.

Environ Microbiol. 2015 Jul;17(7):2209-15. doi: 10.1111/1462-2920.12708. Epub 2015 Jan 27. Review.

PMID:
25384844
31.

Converting carbon dioxide to butyrate with an engineered strain of Clostridium ljungdahlii.

Ueki T, Nevin KP, Woodard TL, Lovley DR.

MBio. 2014 Oct 21;5(5):e01636-14. doi: 10.1128/mBio.01636-14.

32.

Visualization of charge propagation along individual pili proteins using ambient electrostatic force microscopy.

Malvankar NS, Yalcin SE, Tuominen MT, Lovley DR.

Nat Nanotechnol. 2014 Dec;9(12):1012-7. doi: 10.1038/nnano.2014.236. Epub 2014 Oct 19.

PMID:
25326694
33.

Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures.

Chen S, Rotaru AE, Liu F, Philips J, Woodard TL, Nevin KP, Lovley DR.

Bioresour Technol. 2014 Dec;173:82-86. doi: 10.1016/j.biortech.2014.09.009. Epub 2014 Sep 22.

PMID:
25285763
34.

Proteome of Geobacter sulfurreducens in the presence of U(VI).

Orellana R, Hixson KK, Murphy S, Mester T, Sharma ML, Lipton MS, Lovley DR.

Microbiology. 2014 Dec;160(Pt 12):2607-17. doi: 10.1099/mic.0.081398-0. Epub 2014 Oct 1.

PMID:
25273002
35.

Methane production from protozoan endosymbionts following stimulation of microbial metabolism within subsurface sediments.

Holmes DE, Giloteaux L, Orellana R, Williams KH, Robbins MJ, Lovley DR.

Front Microbiol. 2014 Aug 6;5:366. doi: 10.3389/fmicb.2014.00366. eCollection 2014.

36.

Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.

Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.

ISME J. 2015 Feb;9(2):333-46. doi: 10.1038/ismej.2014.128. Epub 2014 Aug 1.

37.

Centimeter-long electron transport in marine sediments via conductive minerals.

Malvankar NS, King GM, Lovley DR.

ISME J. 2015 Feb;9(2):527-31. doi: 10.1038/ismej.2014.131. Epub 2014 Jul 22.

38.

Identification of genes specifically required for the anaerobic metabolism of benzene in Geobacter metallireducens.

Zhang T, Tremblay PL, Chaurasia AK, Smith JA, Bain TS, Lovley DR.

Front Microbiol. 2014 May 22;5:245. doi: 10.3389/fmicb.2014.00245. eCollection 2014.

39.

Microbial nanowires for bioenergy applications.

Malvankar NS, Lovley DR.

Curr Opin Biotechnol. 2014 Jun;27:88-95. doi: 10.1016/j.copbio.2013.12.003. Epub 2013 Dec 31. Review.

PMID:
24863901
40.

Promoting interspecies electron transfer with biochar.

Chen S, Rotaru AE, Shrestha PM, Malvankar NS, Liu F, Fan W, Nevin KP, Lovley DR.

Sci Rep. 2014 May 21;4:5019. doi: 10.1038/srep05019.

41.

Direct interspecies electron transfer between Geobacter metallireducens and Methanosarcina barkeri.

Rotaru AE, Shrestha PM, Liu F, Markovaite B, Chen S, Nevin KP, Lovley DR.

Appl Environ Microbiol. 2014 Aug;80(15):4599-605.

42.

Going wireless: Fe(III) oxide reduction without pili by Geobacter sulfurreducens strain JS-1.

Smith JA, Tremblay PL, Shrestha PM, Snoeyenbos-West OL, Franks AE, Nevin KP, Lovley DR.

Appl Environ Microbiol. 2014 Jul;80(14):4331-40. doi: 10.1128/AEM.01122-14. Epub 2014 May 9.

43.

Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens.

Feist AM, Nagarajan H, Rotaru AE, Tremblay PL, Zhang T, Nevin KP, Lovley DR, Zengler K.

PLoS Comput Biol. 2014 Apr 24;10(4):e1003575. doi: 10.1371/journal.pcbi.1003575. eCollection 2014 Apr.

44.

Magnetite compensates for the lack of a pilin-associated c-type cytochrome in extracellular electron exchange.

Liu F, Rotaru AE, Shrestha PM, Malvankar NS, Nevin KP, Lovley DR.

Environ Microbiol. 2015 Mar;17(3):648-55. doi: 10.1111/1462-2920.12485. Epub 2014 May 5.

PMID:
24725505
45.

The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu.

Shanmugam R, Aklujkar M, Schäfer M, Reinhardt R, Nickel O, Reuter G, Lovley DR, Ehrenhofer-Murray A, Nellen W, Ankri S, Helm M, Jurkowski TP, Jeltsch A.

Nucleic Acids Res. 2014 Jun;42(10):6487-96. doi: 10.1093/nar/gku256. Epub 2014 Apr 7.

46.

Lactose-inducible system for metabolic engineering of Clostridium ljungdahlii.

Banerjee A, Leang C, Ueki T, Nevin KP, Lovley DR.

Appl Environ Microbiol. 2014 Apr;80(8):2410-6. doi: 10.1128/AEM.03666-13. Epub 2014 Feb 7.

47.

A Geobacter sulfurreducens strain expressing pseudomonas aeruginosa type IV pili localizes OmcS on pili but is deficient in Fe(III) oxide reduction and current production.

Liu X, Tremblay PL, Malvankar NS, Nevin KP, Lovley DR, Vargas M.

Appl Environ Microbiol. 2014 Feb;80(3):1219-24. doi: 10.1128/AEM.02938-13. Epub 2013 Dec 2.

48.

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.

Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.

Microb Cell Fact. 2013 Nov 25;12:118. doi: 10.1186/1475-2859-12-118.

49.

Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association.

Nagarajan H, Embree M, Rotaru AE, Shrestha PM, Feist AM, Palsson BØ, Lovley DR, Zengler K.

Nat Commun. 2013;4:2809. doi: 10.1038/ncomms3809.

PMID:
24264237
50.

Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange.

Shrestha PM, Rotaru AE, Aklujkar M, Liu F, Shrestha M, Summers ZM, Malvankar N, Flores DC, Lovley DR.

Environ Microbiol Rep. 2013 Dec;5(6):904-10. doi: 10.1111/1758-2229.12093. Epub 2013 Sep 12.

PMID:
24249299

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