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Items: 1 to 50 of 89

1.

Brain-to-Brain Synchrony during Naturalistic Social Interactions.

Kinreich S, Djalovski A, Kraus L, Louzoun Y, Feldman R.

Sci Rep. 2017 Dec 6;7(1):17060. doi: 10.1038/s41598-017-17339-5.

2.

Modeling coverage gaps in haplotype frequencies via Bayesian inference to improve stem cell donor selection.

Louzoun Y, Alter I, Gragert L, Albrecht M, Maiers M.

Immunogenetics. 2017 Nov 9. doi: 10.1007/s00251-017-1040-4. [Epub ahead of print]

PMID:
29124304
3.

HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes.

Alter I, Gragert L, Fingerson S, Maiers M, Louzoun Y.

PLoS Comput Biol. 2017 Aug 28;13(8):e1005693. doi: 10.1371/journal.pcbi.1005693. eCollection 2017 Aug.

4.

Support vector machine-based differentiation between aggressive and chronic periodontitis using microbial profiles.

Feres M, Louzoun Y, Haber S, Faveri M, Figueiredo LC, Levin L.

Int Dent J. 2018 Feb;68(1):39-46. doi: 10.1111/idj.12326. Epub 2017 Aug 2.

PMID:
28771699
5.

Converging evolution leads to near maximal junction diversity through parallel mechanisms in B and T cell receptors.

Benichou JIC, van Heijst JWJ, Glanville J, Louzoun Y.

Phys Biol. 2017 Jun 15;14(4):045003. doi: 10.1088/1478-3975/aa7366.

PMID:
28510537
6.

Corrigendum to "Unraveling cognitive traits using the Morris water maze unbiased strategy classification (MUST-C) algorithm" [Brain Behav. Immun. 52C (2016) 132-144].

Illouz T, Madar R, Louzoun Y, Griffioen KJ, Okun E.

Brain Behav Immun. 2017 Mar;61:386. doi: 10.1016/j.bbi.2016.02.016. Epub 2016 Feb 26. No abstract available.

PMID:
28213173
7.

Unbiased classification of spatial strategies in the Barnes maze.

Illouz T, Madar R, Clague C, Griffioen KJ, Louzoun Y, Okun E.

Bioinformatics. 2016 Nov 1;32(21):3314-3320. Epub 2016 Jul 4.

PMID:
27378295
8.

Fluctuations-induced coexistence in public goods dynamics.

Behar H, Brenner N, Ariel G, Louzoun Y.

Phys Biol. 2016 Oct 18;13(5):056006.

PMID:
27754974
9.

Self-Antigen-Driven Thymic B Cell Class Switching Promotes T Cell Central Tolerance.

Perera J, Zheng Z, Li S, Gudjonson H, Kalinina O, Benichou JIC, Block KE, Louzoun Y, Yin D, Chong AS, Dinner AR, Weigert M, Huang H.

Cell Rep. 2016 Oct 4;17(2):387-398. doi: 10.1016/j.celrep.2016.09.011.

10.

Effects of distribution of infection rate on epidemic models.

Lachiany M, Louzoun Y.

Phys Rev E. 2016 Aug;94(2-1):022409. doi: 10.1103/PhysRevE.94.022409. Epub 2016 Aug 11.

PMID:
27627337
11.

Population Growth Combined with Wide Offspring Distributions can Increase Fixation Rate and Reduce Genetic Diversity.

Alter I, Louzoun Y.

Bull Math Biol. 2016 Jul;78(7):1477-92. doi: 10.1007/s11538-016-0191-z. Epub 2016 Jul 15.

PMID:
27422387
12.

System-wide Analysis of the T Cell Response.

Covacu R, Philip H, Jaronen M, Almeida J, Kenison JE, Darko S, Chao CC, Yaari G, Louzoun Y, Carmel L, Douek DC, Efroni S, Quintana FJ.

Cell Rep. 2016 Mar 22;14(11):2733-44. doi: 10.1016/j.celrep.2016.02.056. Epub 2016 Mar 10.

13.

Impact of the shedding level on transmission of persistent infections in Mycobacterium avium subspecies paratuberculosis (MAP).

Slater N, Mitchell RM, Whitlock RH, Fyock T, Pradhan AK, Knupfer E, Schukken YH, Louzoun Y.

Vet Res. 2016 Feb 29;47:38. doi: 10.1186/s13567-016-0323-3.

14.

DUSTER: dynamic contrast enhance up-sampled temporal resolution analysis method.

Liberman G, Louzoun Y, Artzi M, Nadav G, Ewing JR, Ben Bashat D.

Magn Reson Imaging. 2016 May;34(4):442-50. doi: 10.1016/j.mri.2015.12.014. Epub 2015 Dec 18.

PMID:
26708030
15.

Estimate of within population incremental selection through branch imbalance in lineage trees.

Liberman G, Benichou JI, Maman Y, Glanville J, Alter I, Louzoun Y.

Nucleic Acids Res. 2016 Mar 18;44(5):e46. doi: 10.1093/nar/gkv1198. Epub 2015 Nov 19.

16.

The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales.

Yaari G, Benichou JI, Vander Heiden JA, Kleinstein SH, Louzoun Y.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 5;370(1676). pii: 20140242. doi: 10.1098/rstb.2014.0242.

17.

Adaptive shut-down of EEG activity predicts critical acidemia in the near-term ovine fetus.

Frasch MG, Durosier LD, Gold N, Cao M, Matushewski B, Keenliside L, Louzoun Y, Ross MG, Richardson BS.

Physiol Rep. 2015 Jul;3(7). pii: e12435. doi: 10.14814/phy2.12435.

18.

Two state model for a constant disease hazard in paratuberculosis (and other bovine diseases).

Louzoun Y, Mitchell R, Behar H, Schukken Y.

Vet Res. 2015 Jun 19;46:67. doi: 10.1186/s13567-015-0189-9.

19.

Differences in intermittent and continuous fecal shedding patterns between natural and experimental Mycobacterium avium subspecies paratuberculosis infections in cattle.

Mitchell RM, Schukken Y, Koets A, Weber M, Bakker D, Stabel J, Whitlock RH, Louzoun Y.

Vet Res. 2015 Jun 19;46:66. doi: 10.1186/s13567-015-0188-x.

20.

Power laws for heavy-tailed distributions: modeling allele and haplotype diversity for the national marrow donor program.

Slater N, Louzoun Y, Gragert L, Maiers M, Chatterjee A, Albrecht M.

PLoS Comput Biol. 2015 Apr 22;11(4):e1004204. doi: 10.1371/journal.pcbi.1004204. eCollection 2015 Apr.

21.

Commensal pathogens as a source of a coexistence mechanism.

Behar H, Louzoun Y.

J Theor Biol. 2015 Apr 7;370:45-52. doi: 10.1016/j.jtbi.2015.01.030. Epub 2015 Feb 4.

PMID:
25660058
22.

Hepatitis B surface antigen genetic elements critical for immune escape correlate with hepatitis B virus reactivation upon immunosuppression.

Salpini R, Colagrossi L, Bellocchi MC, Surdo M, Becker C, Alteri C, Aragri M, Ricciardi A, Armenia D, Pollicita M, Di Santo F, Carioti L, Louzoun Y, Mastroianni CM, Lichtner M, Paoloni M, Esposito M, D'Amore C, Marrone A, Marignani M, Sarrecchia C, Sarmati L, Andreoni M, Angelico M, Verheyen J, Perno CF, Svicher V.

Hepatology. 2015 Mar;61(3):823-33. doi: 10.1002/hep.27604. Epub 2015 Jan 28.

PMID:
25418031
23.

Viral CD8 T cell epitope nucleotide composition shows evidence of short- and long-term evolutionary strategies.

Maman Y, Hershberg U, Louzoun Y.

Immunogenetics. 2015 Jan;67(1):15-24. doi: 10.1007/s00251-014-0811-4. Epub 2014 Nov 8.

PMID:
25376343
24.

Coexistence of productive and non-productive populations by fluctuation-driven spatio-temporal patterns.

Behar H, Brenner N, Louzoun Y.

Theor Popul Biol. 2014 Sep;96:20-9. doi: 10.1016/j.tpb.2014.06.002. Epub 2014 Jul 21.

PMID:
25058368
25.

T₁ mapping using variable flip angle SPGR data with flip angle correction.

Liberman G, Louzoun Y, Ben Bashat D.

J Magn Reson Imaging. 2014 Jul;40(1):171-80. doi: 10.1002/jmri.24373. Epub 2013 Nov 25.

PMID:
24990618
26.

A mathematical model for pancreatic cancer growth and treatments.

Louzoun Y, Xue C, Lesinski GB, Friedman A.

J Theor Biol. 2014 Jun 21;351:74-82. doi: 10.1016/j.jtbi.2014.02.028. Epub 2014 Mar 1.

27.

Genes related to differentiation are correlated with the gene regulatory network structure.

Bodaker M, Meshorer E, Mitrani E, Louzoun Y.

Bioinformatics. 2014 Feb 1;30(3):406-13. doi: 10.1093/bioinformatics/btt685. Epub 2013 Dec 12.

PMID:
24336647
28.

Edge removal balances preferential attachment and triad closing.

Brot H, Honig M, Muchnik L, Goldenberg J, Louzoun Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Oct;88(4):042815. Epub 2013 Oct 22.

PMID:
24229233
29.

Multi Step Selection in Ig H Chains is Initially Focused on CDR3 and Then on Other CDR Regions.

Liberman G, Benichou J, Tsaban L, Glanville J, Louzoun Y.

Front Immunol. 2013 Sep 17;4:274. doi: 10.3389/fimmu.2013.00274. eCollection 2013.

30.

Viral proteome size and CD8+ T cell epitope density are correlated: the effect of complexity on selection.

Agranovich A, Maman Y, Louzoun Y.

Infect Genet Evol. 2013 Dec;20:71-7. doi: 10.1016/j.meegid.2013.07.030. Epub 2013 Aug 15.

PMID:
23954420
31.

Diffusion rate determines balance between extinction and proliferation in birth-death processes.

Behar H, Agranovich A, Louzoun Y.

Math Biosci Eng. 2013 Jun;10(3):523-50. doi: 10.3934/mbe.2013.10.523.

PMID:
23906134
32.

The restricted DH gene reading frame usage in the expressed human antibody repertoire is selected based upon its amino acid content.

Benichou J, Glanville J, Prak ET, Azran R, Kuo TC, Pons J, Desmarais C, Tsaban L, Louzoun Y.

J Immunol. 2013 Jun 1;190(11):5567-77. doi: 10.4049/jimmunol.1201929. Epub 2013 Apr 29.

33.

Mathematical conditions for induced cell differentiation and trans-differentiation in adult cells.

Bodaker M, Louzoun Y, Mitrani E.

Bull Math Biol. 2013 May;75(5):819-44. doi: 10.1007/s11538-013-9837-2. Epub 2013 Apr 11.

PMID:
23576207
34.

Predictor for the effect of amino acid composition on CD4+ T cell epitopes preprocessing.

Hoze E, Tsaban L, Maman Y, Louzoun Y.

J Immunol Methods. 2013 May 31;391(1-2):163-73. doi: 10.1016/j.jim.2013.02.006. Epub 2013 Feb 26.

35.

Brain activation and heart rate during script-driven traumatic imagery in PTSD: preliminary findings.

Barkay G, Freedman N, Lester H, Louzoun Y, Sapoznikov D, Luckenbaugh D, Shalev AY, Chisin RG, Bonne O.

Psychiatry Res. 2012 Nov 30;204(2-3):155-60. doi: 10.1016/j.pscychresns.2012.08.007. Epub 2012 Nov 6.

PMID:
23137802
36.

Balance between absorbing and positive fixed points in resource consumption models.

Behar H, Shnerb N, Louzoun Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Sep;86(3 Pt 1):031146. Epub 2012 Sep 28.

PMID:
23030905
37.

Automatic multi-modal MR tissue classification for the assessment of response to bevacizumab in patients with glioblastoma.

Liberman G, Louzoun Y, Aizenstein O, Blumenthal DT, Bokstein F, Palmon M, Corn BW, Ben Bashat D.

Eur J Radiol. 2013 Feb;82(2):e87-94. doi: 10.1016/j.ejrad.2012.09.001. Epub 2012 Sep 25.

PMID:
23017192
38.

Evolution of viral life-cycle in response to cytotoxic T lymphocyte-mediated immunity.

Louzoun Y, Ganusov VV.

J Theor Biol. 2012 Oct 7;310:3-13. doi: 10.1016/j.jtbi.2012.06.020. Epub 2012 Jun 23.

PMID:
22735670
39.

Predator-prey dynamics in a uniform medium lead to directed percolation and wave-train propagation.

Agranovich A, Louzoun Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Mar;85(3 Pt 1):031911. Epub 2012 Mar 21.

PMID:
22587127
40.

Mathematical modelling and evaluation of the different routes of transmission of lumpy skin disease virus.

Magori-Cohen R, Louzoun Y, Herziger Y, Oron E, Arazi A, Tuppurainen E, Shpigel NY, Klement E.

Vet Res. 2012 Jan 11;43:1. doi: 10.1186/1297-9716-43-1.

41.

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

Benichou J, Ben-Hamo R, Louzoun Y, Efroni S.

Immunology. 2012 Mar;135(3):183-91. doi: 10.1111/j.1365-2567.2011.03527.x. Review.

42.

Bacteria modulate the CD8+ T cell epitope repertoire of host cytosol-exposed proteins to manipulate the host immune response.

Maman Y, Nir-Paz R, Louzoun Y.

PLoS Comput Biol. 2011 Oct;7(10):e1002220. doi: 10.1371/journal.pcbi.1002220. Epub 2011 Oct 13.

43.

Optimal viral immune surveillance evasion strategies.

Agranovich A, Vider-Shalit T, Louzoun Y.

Theor Popul Biol. 2011 Dec;80(4):233-43. doi: 10.1016/j.tpb.2011.08.005. Epub 2011 Sep 2.

44.

Sleep-wake transitions in premature neonates predict early development.

Weisman O, Magori-Cohen R, Louzoun Y, Eidelman AI, Feldman R.

Pediatrics. 2011 Oct;128(4):706-14. doi: 10.1542/peds.2011-0047. Epub 2011 Sep 12.

PMID:
21911350
45.

Universal peptide vaccines - optimal peptide vaccine design based on viral sequence conservation.

Toussaint NC, Maman Y, Kohlbacher O, Louzoun Y.

Vaccine. 2011 Nov 3;29(47):8745-53. doi: 10.1016/j.vaccine.2011.07.132. Epub 2011 Aug 27.

PMID:
21875632
46.

Mother and infant coordinate heart rhythms through episodes of interaction synchrony.

Feldman R, Magori-Cohen R, Galili G, Singer M, Louzoun Y.

Infant Behav Dev. 2011 Dec;34(4):569-77. doi: 10.1016/j.infbeh.2011.06.008. Epub 2011 Jul 20.

PMID:
21767879
47.

Regulation of modular Cyclin and CDK feedback loops by an E2F transcription oscillator in the mammalian cell cycle.

Lavi O, Ginsberg D, Louzoun Y.

Math Biosci Eng. 2011 Apr;8(2):445-61. doi: 10.3934/mbe.2011.8.445.

PMID:
21631139
48.

Somatic hypermutation targeting is influenced by location within the immunoglobulin V region.

Cohen RM, Kleinstein SH, Louzoun Y.

Mol Immunol. 2011 Jul;48(12-13):1477-83. doi: 10.1016/j.molimm.2011.04.002. Epub 2011 May 18.

49.

Circulating lymphocyte subsets in normal adults are variable and can be clustered into subgroups.

Sekiguchi DR, Smith SB, Sutter JA, Goodman NG, Propert K, Louzoun Y, Rogers W, Luning Prak ET.

Cytometry B Clin Cytom. 2011 Sep;80(5):291-9. doi: 10.1002/cyto.b.20594. Epub 2011 Apr 6.

50.

Signal peptides and trans-membrane regions are broadly immunogenic and have high CD8+ T cell epitope densities: Implications for vaccine development.

Kovjazin R, Volovitz I, Daon Y, Vider-Shalit T, Azran R, Tsaban L, Carmon L, Louzoun Y.

Mol Immunol. 2011 Apr;48(8):1009-18. doi: 10.1016/j.molimm.2011.01.006. Epub 2011 Feb 12.

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