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Items: 16


Erratum to: Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.).

Lu M, Krutovsky KV, Nelson CD, Koralewski TE, Byram TD, Loopstra CA.

BMC Genomics. 2016 Nov 4;17(1):869. No abstract available.


Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana).

Gonzalez-Ibeas D, Martinez-Garcia PJ, Famula RA, Delfino-Mix A, Stevens KA, Loopstra CA, Langley CH, Neale DB, Wegrzyn JL.

G3 (Bethesda). 2016 Dec 7;6(12):3787-3802. doi: 10.1534/g3.116.032805.


Sequence of the Sugar Pine Megagenome.

Stevens KA, Wegrzyn JL, Zimin A, Puiu D, Crepeau M, Cardeno C, Paul R, Gonzalez-Ibeas D, Koriabine M, Holtz-Morris AE, Martínez-García PJ, Sezen UU, Marçais G, Jermstad K, McGuire PE, Loopstra CA, Davis JM, Eckert A, de Jong P, Yorke JA, Salzberg SL, Neale DB, Langley CH.

Genetics. 2016 Dec;204(4):1613-1626. Epub 2016 Oct 28.


Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.).

Lu M, Krutovsky KV, Nelson CD, Koralewski TE, Byram TD, Loopstra CA.

BMC Genomics. 2016 Sep 13;17(1):730. doi: 10.1186/s12864-016-3081-8. Erratum in: BMC Genomics. 2016 Nov 4;17 (1):869.


Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.

Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, Puiu D, Salzberg SL, Dejong PJ, Mockaitis K, Main D, Langley CH, Neale DB.

Genetics. 2014 Mar;196(3):891-909. doi: 10.1534/genetics.113.159996.


Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, deJong PJ, Yorke JA, Salzberg SL, Langley CH.

Genome Biol. 2014 Mar 4;15(3):R59. doi: 10.1186/gb-2014-15-3-r59.


The evolutionary genetics of the genes underlying phenotypic associations for loblolly pine (Pinus taeda, Pinaceae).

Eckert AJ, Wegrzyn JL, Liechty JD, Lee JM, Cumbie WP, Davis JM, Goldfarb B, Loopstra CA, Palle SR, Quesada T, Langley CH, Neale DB.

Genetics. 2013 Dec;195(4):1353-72. doi: 10.1534/genetics.113.157198. Epub 2013 Oct 11.


Association of loblolly pine xylem development gene expression with single-nucleotide polymorphisms.

Palle SR, Seeve CM, Eckert AJ, Wegrzyn JL, Neale DB, Loopstra CA.

Tree Physiol. 2013 Jul;33(7):763-74. doi: 10.1093/treephys/tpt054.


The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences.

Kovach A, Wegrzyn JL, Parra G, Holt C, Bruening GE, Loopstra CA, Hartigan J, Yandell M, Langley CH, Korf I, Neale DB.

BMC Genomics. 2010 Jul 7;11:420. doi: 10.1186/1471-2164-11-420.


An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine.

Zhang Y, Brown G, Whetten R, Loopstra CA, Neale D, Kieliszewski MJ, Sederoff RR.

Plant Mol Biol. 2003 May;52(1):91-102.


Sequences upstream and downstream of two xylem-specific pine genes influence their expression.

No E, Zhou Y, Loopstra CA.

Plant Sci. 2000 Dec 7;160(1):77-86.


Purification and cloning of an arabinogalactan-protein from xylem of loblolly pine.

Loopstra CA, Puryear JD, No EG.

Planta. 2000 Mar;210(4):686-9.


Two pine endo-beta-1,4-glucanases are associated with rapidly growing reproductive structures.

Loopstra CA, Mouradov A, Vivian-Smith A, Glassick TV, Gale BV, Southerton SG, Marshall H, Teasdale RD.

Plant Physiol. 1998 Mar;116(3):959-67.


Xylem-specific gene expression in loblolly pine.

Loopstra CA, Sederoff RR.

Plant Mol Biol. 1995 Jan;27(2):277-91.


Agrobacterium-mediated DNA transfer in sugar pine.

Loopstra CA, Stomp AM, Sederoff RR.

Plant Mol Biol. 1990 Jul;15(1):1-9.


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