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Items: 37

1.

Corrigendum: The 4D nucleome project.

Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network.

Nature. 2017 Dec 14;552(7684):278. doi: 10.1038/nature24667. Epub 2017 Nov 22.

PMID:
29168505
2.

Cooperative interactions enable singular olfactory receptor expression in mouse olfactory neurons.

Monahan K, Schieren I, Cheung J, Mumbey-Wafula A, Monuki ES, Lomvardas S.

Elife. 2017 Sep 21;6. pii: e28620. doi: 10.7554/eLife.28620.

3.

The 4D nucleome project.

Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network.

Nature. 2017 Sep 13;549(7671):219-226. doi: 10.1038/nature23884. Erratum in: Nature. 2017 Nov 22;:.

4.

Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo.

Le Gros MA, Clowney EJ, Magklara A, Yen A, Markenscoff-Papadimitriou E, Colquitt B, Myllys M, Kellis M, Lomvardas S, Larabell CA.

Cell Rep. 2016 Nov 15;17(8):2125-2136. doi: 10.1016/j.celrep.2016.10.060.

5.

Histone and DNA Modifications as Regulators of Neuronal Development and Function.

Lomvardas S, Maniatis T.

Cold Spring Harb Perspect Biol. 2016 Jul 1;8(7). pii: a024208. doi: 10.1101/cshperspect.a024208. Review.

PMID:
27371659
6.

A Guide to Packing Your DNA.

Dekker J, Guttman M, Lomvardas S.

Cell. 2016 Apr 7;165(2):259-61. doi: 10.1016/j.cell.2016.03.039.

7.

Injured sensory neuron-derived CSF1 induces microglial proliferation and DAP12-dependent pain.

Guan Z, Kuhn JA, Wang X, Colquitt B, Solorzano C, Vaman S, Guan AK, Evans-Reinsch Z, Braz J, Devor M, Abboud-Werner SL, Lanier LL, Lomvardas S, Basbaum AI.

Nat Neurosci. 2016 Jan;19(1):94-101. doi: 10.1038/nn.4189. Epub 2015 Dec 7.

8.

Genomic Views of Transcriptional Enhancers: Essential Determinants of Cellular Identity and Activity-Dependent Responses in the CNS.

Gray JM, Kim TK, West AE, Nord AS, Markenscoff-Papadimitriou E, Lomvardas S.

J Neurosci. 2015 Oct 14;35(41):13819-26. doi: 10.1523/JNEUROSCI.2622-15.2015. Review.

9.

Monoallelic expression of olfactory receptors.

Monahan K, Lomvardas S.

Annu Rev Cell Dev Biol. 2015;31:721-40. doi: 10.1146/annurev-cellbio-100814-125308. Epub 2015 Sep 10. Review.

10.

Chemosensory receptor specificity and regulation.

Dalton RP, Lomvardas S.

Annu Rev Neurosci. 2015 Jul 8;38:331-49. doi: 10.1146/annurev-neuro-071714-034145. Epub 2015 Apr 22. Review.

11.

Heterochromatin-mediated gene silencing facilitates the diversification of olfactory neurons.

Lyons DB, Magklara A, Goh T, Sampath SC, Schaefer A, Schotta G, Lomvardas S.

Cell Rep. 2014 Nov 6;9(3):884-92. doi: 10.1016/j.celrep.2014.10.001. Epub 2014 Oct 30.

12.

Enhancer interaction networks as a means for singular olfactory receptor expression.

Markenscoff-Papadimitriou E, Allen WE, Colquitt BM, Goh T, Murphy KK, Monahan K, Mosley CP, Ahituv N, Lomvardas S.

Cell. 2014 Oct 23;159(3):543-57. doi: 10.1016/j.cell.2014.09.033.

13.

Dnmt3a regulates global gene expression in olfactory sensory neurons and enables odorant-induced transcription.

Colquitt BM, Markenscoff-Papadimitriou E, Duffié R, Lomvardas S.

Neuron. 2014 Aug 20;83(4):823-38. doi: 10.1016/j.neuron.2014.07.013. Epub 2014 Aug 7.

14.

Repressive histone methylation: a case study in deterministic versus stochastic gene regulation.

Lyons DB, Lomvardas S.

Biochim Biophys Acta. 2014 Dec;1839(12):1373-84. doi: 10.1016/j.bbagrm.2014.05.010. Epub 2014 May 21. Review.

PMID:
24859457
15.

Parallel states of pathological Wnt signaling in neonatal brain injury and colon cancer.

Fancy SP, Harrington EP, Baranzini SE, Silbereis JC, Shiow LR, Yuen TJ, Huang EJ, Lomvardas S, Rowitch DH.

Nat Neurosci. 2014 Apr;17(4):506-12. doi: 10.1038/nn.3676. Epub 2014 Mar 9. Erratum in: Nat Neurosci. 2014 Dec;17(12):1841.

16.

Nuclear architecture as an epigenetic regulator of neural development and function.

Alexander JM, Lomvardas S.

Neuroscience. 2014 Apr 4;264:39-50. doi: 10.1016/j.neuroscience.2014.01.044. Epub 2014 Jan 31. Review.

17.

Co-opting the unfolded protein response to elicit olfactory receptor feedback.

Dalton RP, Lyons DB, Lomvardas S.

Cell. 2013 Oct 10;155(2):321-32. doi: 10.1016/j.cell.2013.09.033.

18.

Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity.

Colquitt BM, Allen WE, Barnea G, Lomvardas S.

Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14682-7. doi: 10.1073/pnas.1302759110. Epub 2013 Aug 22.

19.

An epigenetic trap stabilizes singular olfactory receptor expression.

Lyons DB, Allen WE, Goh T, Tsai L, Barnea G, Lomvardas S.

Cell. 2013 Jul 18;154(2):325-36. doi: 10.1016/j.cell.2013.06.039.

20.

Stochastic gene expression in mammals: lessons from olfaction.

Magklara A, Lomvardas S.

Trends Cell Biol. 2013 Sep;23(9):449-56. doi: 10.1016/j.tcb.2013.04.005. Epub 2013 May 18. Review.

21.

How keeping active pays off in the olfactory system.

Monahan K, Lomvardas S.

Elife. 2012 Dec 13;1:e00326. doi: 10.7554/eLife.00326.

22.

Nuclear aggregation of olfactory receptor genes governs their monogenic expression.

Clowney EJ, LeGros MA, Mosley CP, Clowney FG, Markenskoff-Papadimitriou EC, Myllys M, Barnea G, Larabell CA, Lomvardas S.

Cell. 2012 Nov 9;151(4):724-37. doi: 10.1016/j.cell.2012.09.043.

23.

Neurons expressing trace amine-associated receptors project to discrete glomeruli and constitute an olfactory subsystem.

Johnson MA, Tsai L, Roy DS, Valenzuela DH, Mosley C, Magklara A, Lomvardas S, Liberles SD, Barnea G.

Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13410-5. doi: 10.1073/pnas.1206724109. Epub 2012 Jul 26.

24.

Coding exons function as tissue-specific enhancers of nearby genes.

Birnbaum RY, Clowney EJ, Agamy O, Kim MJ, Zhao J, Yamanaka T, Pappalardo Z, Clarke SL, Wenger AM, Nguyen L, Gurrieri F, Everman DB, Schwartz CE, Birk OS, Bejerano G, Lomvardas S, Ahituv N.

Genome Res. 2012 Jun;22(6):1059-68. doi: 10.1101/gr.133546.111. Epub 2012 Mar 22.

25.

High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation.

Clowney EJ, Magklara A, Colquitt BM, Pathak N, Lane RP, Lomvardas S.

Genome Res. 2011 Aug;21(8):1249-59. doi: 10.1101/gr.120162.110. Epub 2011 Jun 24.

26.

An epigenetic signature for monoallelic olfactory receptor expression.

Magklara A, Yen A, Colquitt BM, Clowney EJ, Allen W, Markenscoff-Papadimitriou E, Evans ZA, Kheradpour P, Mountoufaris G, Carey C, Barnea G, Kellis M, Lomvardas S.

Cell. 2011 May 13;145(4):555-70. doi: 10.1016/j.cell.2011.03.040. Epub 2011 Apr 28.

27.

Transcription factors mediate long-range enhancer-promoter interactions.

Nolis IK, McKay DJ, Mantouvalou E, Lomvardas S, Merika M, Thanos D.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20222-7. doi: 10.1073/pnas.0902454106. Epub 2009 Nov 18.

28.

Interchromosomal interactions and olfactory receptor choice.

Lomvardas S, Barnea G, Pisapia DJ, Mendelsohn M, Kirkland J, Axel R.

Cell. 2006 Jul 28;126(2):403-13.

29.

p38 MAP kinase mediates both short-term and long-term synaptic depression in aplysia.

Guan Z, Kim JH, Lomvardas S, Holick K, Xu S, Kandel ER, Schwartz JH.

J Neurosci. 2003 Aug 13;23(19):7317-25.

30.

Integration of long-term-memory-related synaptic plasticity involves bidirectional regulation of gene expression and chromatin structure.

Guan Z, Giustetto M, Lomvardas S, Kim JH, Miniaci MC, Schwartz JH, Thanos D, Kandel ER.

Cell. 2002 Nov 15;111(4):483-93.

31.

Modifying gene expression programs by altering core promoter chromatin architecture.

Lomvardas S, Thanos D.

Cell. 2002 Jul 26;110(2):261-71.

PMID:
12150933
32.

Opening chromatin.

Lomvardas S, Thanos D.

Mol Cell. 2002 Feb;9(2):209-11. Review.

33.

Nucleosome sliding via TBP DNA binding in vivo.

Lomvardas S, Thanos D.

Cell. 2001 Sep 21;106(6):685-96.

34.

Coordination of a transcriptional switch by HMGI(Y) acetylation.

Munshi N, Agalioti T, Lomvardas S, Merika M, Chen G, Thanos D.

Science. 2001 Aug 10;293(5532):1133-6.

35.

The IFN-beta enhancer: a paradigm for understanding activation and repression of inducible gene expression.

Munshi N, Yie Y, Merika M, Senger K, Lomvardas S, Agalioti T, Thanos D.

Cold Spring Harb Symp Quant Biol. 1999;64:149-59. Review. No abstract available.

PMID:
11232280
36.

Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter.

Agalioti T, Lomvardas S, Parekh B, Yie J, Maniatis T, Thanos D.

Cell. 2000 Nov 10;103(4):667-78.

37.

A GSK3beta phosphorylation site in axin modulates interaction with beta-catenin and Tcf-mediated gene expression.

Jho Eh, Lomvardas S, Costantini F.

Biochem Biophys Res Commun. 1999 Dec 9;266(1):28-35.

PMID:
10581160

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