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Surveillance of circulating Bordetella pertussis strains in Europe during 1998-2015.

Barkoff AM, Mertsola J, Pierard D, Dalby T, Vermedal Hoegh S, Guillot S, Stefanelli P, van Gent M, Berbers G, Vestrheim DF, Greve-Isdahl M, Wehlin L, Ljungman M, Fry NK, Markey K, Auranen K, He Q.

J Clin Microbiol. 2018 Feb 28. pii: JCM.01998-17. doi: 10.1128/JCM.01998-17. [Epub ahead of print]


Apropå! Immunitet mot mässling.

Hallander HO, Ljungman M.

Lakartidningen. 2018 Feb 2;115. pii: EZSZ. Swedish. No abstract available.

Free Article

Mutant p53R270H drives altered metabolism and increased invasion in pancreatic ductal adenocarcinoma.

Schofield HK, Zeller J, Espinoza C, Halbrook CJ, Del Vecchio A, Magnuson B, Fabo T, Daylan AEC, Kovalenko I, Lee HJ, Yan W, Feng Y, Karim SA, Kremer DM, Kumar-Sinha C, Lyssiotis CA, Ljungman M, Morton JP, Galbán S, Fearon ER, Pasca di Magliano M.

JCI Insight. 2018 Jan 25;3(2). pii: 97422. doi: 10.1172/jci.insight.97422. [Epub ahead of print]


Design and Synthesis of Novel Reactive Oxygen Species Inducers for the Treatment of Pancreatic Ductal Adenocarcinoma.

Kuang Y, Sechi M, Nurra S, Ljungman M, Neamati N.

J Med Chem. 2018 Feb 22;61(4):1576-1594. doi: 10.1021/acs.jmedchem.7b01463. Epub 2018 Feb 2.


Discovery and Mechanistic Elucidation of a Class of Protein Disulfide Isomerase Inhibitors for the Treatment of Glioblastoma.

Kyani A, Tamura S, Yang S, Shergalis A, Samanta S, Kuang Y, Ljungman M, Neamati N.

ChemMedChem. 2018 Jan 22;13(2):164-177. doi: 10.1002/cmdc.201700629. Epub 2018 Jan 4.


A Bifunctional MAPK/PI3K Antagonist for Inhibition of Tumor Growth and Metastasis.

Galbán S, Apfelbaum AA, Espinoza C, Heist K, Haley H, Bedi K, Ljungman M, Galbán CJ, Luker GD, Dort MV, Ross BD.

Mol Cancer Ther. 2017 Nov;16(11):2340-2350. doi: 10.1158/1535-7163.MCT-17-0207. Epub 2017 Aug 3.


A damaged genome's transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks.

Iannelli F, Galbiati A, Capozzo I, Nguyen Q, Magnuson B, Michelini F, D'Alessandro G, Cabrini M, Roncador M, Francia S, Crosetto N, Ljungman M, Carninci P, d'Adda di Fagagna F.

Nat Commun. 2017 May 31;8:15656. doi: 10.1038/ncomms15656.


Human prostate luminal cell differentiation requires NOTCH3 induction by p38-MAPK and MYC.

Frank SB, Berger PL, Ljungman M, Miranti CK.

J Cell Sci. 2017 Jun 1;130(11):1952-1964. doi: 10.1242/jcs.197152. Epub 2017 Apr 26.


Transcriptional and post-transcriptional regulation of the ionizing radiation response by ATM and p53.

Venkata Narayanan I, Paulsen MT, Bedi K, Berg N, Ljungman EA, Francia S, Veloso A, Magnuson B, di Fagagna FD, Wilson TE, Ljungman M.

Sci Rep. 2017 Mar 3;7:43598. doi: 10.1038/srep43598.


RPA Interacts with HIRA and Regulates H3.3 Deposition at Gene Regulatory Elements in Mammalian Cells.

Zhang H, Gan H, Wang Z, Lee JH, Zhou H, Ordog T, Wold MS, Ljungman M, Zhang Z.

Mol Cell. 2017 Jan 19;65(2):272-284. doi: 10.1016/j.molcel.2016.11.030.


PDX1 dynamically regulates pancreatic ductal adenocarcinoma initiation and maintenance.

Roy N, Takeuchi KK, Ruggeri JM, Bailey P, Chang D, Li J, Leonhardt L, Puri S, Hoffman MT, Gao S, Halbrook CJ, Song Y, Ljungman M, Malik S, Wright CV, Dawson DW, Biankin AV, Hebrok M, Crawford HC.

Genes Dev. 2016 Dec 15;30(24):2669-2683. doi: 10.1101/gad.291021.116.


Gene length as a biological timer to establish temporal transcriptional regulation.

Kirkconnell KS, Magnuson B, Paulsen MT, Lu B, Bedi K, Ljungman M.

Cell Cycle. 2017 Feb;16(3):259-270. doi: 10.1080/15384101.2016.1234550. Epub 2017 Jan 5.


Mechanistic evaluation and transcriptional signature of a glutathione S-transferase omega 1 inhibitor.

Ramkumar K, Samanta S, Kyani A, Yang S, Tamura S, Ziemke E, Stuckey JA, Li S, Chinnaswamy K, Otake H, Debnath B, Yarovenko V, Sebolt-Leopold JS, Ljungman M, Neamati N.

Nat Commun. 2016 Oct 5;7:13084. doi: 10.1038/ncomms13084.


Genome stability versus transcript diversity.

Magnuson B, Bedi K, Ljungman M.

DNA Repair (Amst). 2016 Aug;44:81-86. doi: 10.1016/j.dnarep.2016.05.010. Epub 2016 May 16. Review.


Capturing the dynamic nascent transcriptome during acute cellular responses: The serum response.

Kirkconnell KS, Paulsen MT, Magnuson B, Bedi K, Ljungman M.

Biol Open. 2016 Jun 15;5(6):837-47. doi: 10.1242/bio.019323.


Identifying transcription start sites and active enhancer elements using BruUV-seq.

Magnuson B, Veloso A, Kirkconnell KS, de Andrade Lima LC, Paulsen MT, Ljungman EA, Bedi K, Prasad J, Wilson TE, Ljungman M.

Sci Rep. 2015 Dec 11;5:17978. doi: 10.1038/srep17978.


ATDC/TRIM29 Drives Invasive Bladder Cancer Formation through miRNA-Mediated and Epigenetic Mechanisms.

Palmbos PL, Wang L, Yang H, Wang Y, Leflein J, Ahmet ML, Wilkinson JE, Kumar-Sinha C, Ney GM, Tomlins SA, Daignault S, Kunju LP, Wu XR, Lotan Y, Liebert M, Ljungman ME, Simeone DM.

Cancer Res. 2015 Dec 1;75(23):5155-66. doi: 10.1158/0008-5472.CAN-15-0603. Epub 2015 Oct 15.


Arsenic Disruption of DNA Damage Responses-Potential Role in Carcinogenesis and Chemotherapy.

Muenyi CS, Ljungman M, States JC.

Biomolecules. 2015 Sep 24;5(4):2184-93. doi: 10.3390/biom5042184. Review.


ATDC (Ataxia Telangiectasia Group D Complementing) Promotes Radioresistance through an Interaction with the RNF8 Ubiquitin Ligase.

Yang H, Palmbos PL, Wang L, Kim EH, Ney GM, Liu C, Prasad J, Misek DE, Yu X, Ljungman M, Simeone DM.

J Biol Chem. 2015 Nov 6;290(45):27146-57. doi: 10.1074/jbc.M115.665489. Epub 2015 Sep 17.


Transcriptional and post-transcriptional regulation of nucleotide excision repair genes in human cells.

Lefkofsky HB, Veloso A, Ljungman M.

Mutat Res. 2015 Jun;776:9-15. doi: 10.1016/j.mrfmmm.2014.11.008. Epub 2014 Dec 3.


Transcription Blockage Leads to New Beginnings.

Andrade-Lima LC, Veloso A, Ljungman M.

Biomolecules. 2015 Jul 21;5(3):1600-17. doi: 10.3390/biom5031600. Review.


Guadecitabine (SGI-110) priming sensitizes hepatocellular carcinoma cells to oxaliplatin.

Kuang Y, El-Khoueiry A, Taverna P, Ljungman M, Neamati N.

Mol Oncol. 2015 Nov;9(9):1799-814. doi: 10.1016/j.molonc.2015.06.002. Epub 2015 Jun 16.


Functional organization of the human 4D Nucleome.

Chen H, Chen J, Muir LA, Ronquist S, Meixner W, Ljungman M, Ried T, Smale S, Rajapakse I.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8002-7. doi: 10.1073/pnas.1505822112. Epub 2015 Jun 15.


Two consecutive randomized controlled pertussis booster trials in children initially vaccinated in infancy with an acellular vaccine: The first with a five-component Tdap vaccine to 5-year olds and the second with five- or monocomponent Tdap vaccines at age 14-15 years.

Carlsson RM, Gustafsson L, Hallander HO, Ljungman M, Olin P, Gothefors L, Nilsson L, Netterlid E.

Vaccine. 2015 Jul 17;33(31):3717-25. doi: 10.1016/j.vaccine.2015.05.079. Epub 2015 Jun 7.


Oncogenic fusion protein EWS-FLI1 is a network hub that regulates alternative splicing.

Selvanathan SP, Graham GT, Erkizan HV, Dirksen U, Natarajan TG, Dakic A, Yu S, Liu X, Paulsen MT, Ljungman ME, Wu CH, Lawlor ER, Üren A, Toretsky JA.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1307-16. doi: 10.1073/pnas.1500536112. Epub 2015 Mar 3.


DNA repair and recovery of RNA synthesis following exposure to ultraviolet light are delayed in long genes.

Andrade-Lima LC, Veloso A, Paulsen MT, Menck CF, Ljungman M.

Nucleic Acids Res. 2015 Mar 11;43(5):2744-56. doi: 10.1093/nar/gkv148. Epub 2015 Feb 26.


Effects of physiological and synthetic IAP antagonism on c-IAP-dependent signaling.

Kocab AJ, Veloso A, Paulsen MT, Ljungman M, Duckett CS.

Oncogene. 2015 Oct;34(43):5472-81. doi: 10.1038/onc.2015.3. Epub 2015 Feb 9.


Overexpression of HOX genes is prevalent in Ewing sarcoma and is associated with altered epigenetic regulation of developmental transcription programs.

Svoboda LK, Harris A, Bailey NJ, Schwentner R, Tomazou E, von Levetzow C, Magnuson B, Ljungman M, Kovar H, Lawlor ER.

Epigenetics. 2014 Dec;9(12):1613-25. doi: 10.4161/15592294.2014.988048.


Zinc finger protein 407 (ZFP407) regulates insulin-stimulated glucose uptake and glucose transporter 4 (Glut4) mRNA.

Buchner DA, Charrier A, Srinivasan E, Wang L, Paulsen MT, Ljungman M, Bridges D, Saltiel AR.

J Biol Chem. 2015 Mar 6;290(10):6376-86. doi: 10.1074/jbc.M114.623736. Epub 2015 Jan 16.


ATDC induces an invasive switch in KRAS-induced pancreatic tumorigenesis.

Wang L, Yang H, Abel EV, Ney GM, Palmbos PL, Bednar F, Zhang Y, Leflein J, Waghray M, Owens S, Wilkinson JE, Prasad J, Ljungman M, Rhim AD, Pasca di Magliano M, Simeone DM.

Genes Dev. 2015 Jan 15;29(2):171-83. doi: 10.1101/gad.253591.114.


Benchmarking of gastric cancer sensitivity to anti-cancer drugs ex vivo as a basis for drug selection in systemic and intraperitoneal therapy.

Hultman B, Mahteme H, Sundbom M, Ljungman M, Larsson R, Nygren P.

J Exp Clin Cancer Res. 2014 Dec 21;33:110. doi: 10.1186/s13046-014-0110-9.


The long non-coding RNA PCAT-1 promotes prostate cancer cell proliferation through cMyc.

Prensner JR, Chen W, Han S, Iyer MK, Cao Q, Kothari V, Evans JR, Knudsen KE, Paulsen MT, Ljungman M, Lawrence TS, Chinnaiyan AM, Feng FY.

Neoplasia. 2014 Nov 20;16(11):900-8. doi: 10.1016/j.neo.2014.09.001. eCollection 2014 Nov.


Large transcription units unify copy number variants and common fragile sites arising under replication stress.

Wilson TE, Arlt MF, Park SH, Rajendran S, Paulsen M, Ljungman M, Glover TW.

Genome Res. 2015 Feb;25(2):189-200. doi: 10.1101/gr.177121.114. Epub 2014 Nov 4.


Nitinol versus steel partially covered self-expandable metal stent for malignant distal biliary obstruction: a randomized trial.

Soderlund C, Linder S, Bergenzaun PE, Grape T, Hakansson HO, Kilander A, Lindell G, Ljungman M, Ohlin B, Nielsen J, Rudberg C, Stotzer PO, Svartholm E, Toth E, Frozanpor F.

Endoscopy. 2014 Nov;46(11):941-8. doi: 10.1055/s-0034-1377936. Epub 2014 Oct 16.


Pertussis-specific memory B-cell and humoral IgG responses in adolescents after a fifth consecutive dose of acellular pertussis vaccine.

Jahnmatz M, Ljungman M, Netterlid E, Jenmalm MC, Nilsson L, Thorstensson R.

Clin Vaccine Immunol. 2014 Sep;21(9):1301-8. doi: 10.1128/CVI.00280-14. Epub 2014 Jul 9.


B-cell responses after intranasal vaccination with the novel attenuated Bordetella pertussis vaccine strain BPZE1 in a randomized phase I clinical trial.

Jahnmatz M, Amu S, Ljungman M, Wehlin L, Chiodi F, Mielcarek N, Locht C, Thorstensson R.

Vaccine. 2014 Jun 5;32(27):3350-6. doi: 10.1016/j.vaccine.2014.04.048. Epub 2014 Apr 29.


Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications.

Veloso A, Kirkconnell KS, Magnuson B, Biewen B, Paulsen MT, Wilson TE, Ljungman M.

Genome Res. 2014 Jun;24(6):896-905. doi: 10.1101/gr.171405.113. Epub 2014 Apr 8.


ATDC/TRIM29 phosphorylation by ATM/MAPKAP kinase 2 mediates radioresistance in pancreatic cancer cells.

Wang L, Yang H, Palmbos PL, Ney G, Detzler TA, Coleman D, Leflein J, Davis M, Zhang M, Tang W, Hicks JK, Helchowski CM, Prasad J, Lawrence TS, Xu L, Yu X, Canman CE, Ljungman M, Simeone DM.

Cancer Res. 2014 Mar 15;74(6):1778-88. doi: 10.1158/0008-5472.CAN-13-2289. Epub 2014 Jan 27.


A phase I clinical study of a live attenuated Bordetella pertussis vaccine--BPZE1; a single centre, double-blind, placebo-controlled, dose-escalating study of BPZE1 given intranasally to healthy adult male volunteers.

Thorstensson R, Trollfors B, Al-Tawil N, Jahnmatz M, Bergström J, Ljungman M, Törner A, Wehlin L, Van Broekhoven A, Bosman F, Debrie AS, Mielcarek N, Locht C.

PLoS One. 2014 Jan 8;9(1):e83449. doi: 10.1371/journal.pone.0083449. eCollection 2014.


Antibody responses to Bordetella pertussis Fim2 or Fim3 following immunization with a whole-cell, two-component, or five-component acellular pertussis vaccine and following pertussis disease in children in Sweden in 1997 and 2007.

Hallander H, Advani A, Alexander F, Gustafsson L, Ljungman M, Pratt C, Hall I, Gorringe AR.

Clin Vaccine Immunol. 2014 Feb;21(2):165-73. doi: 10.1128/CVI.00641-13. Epub 2013 Dec 4.


Genome-wide transcriptional effects of the anti-cancer agent camptothecin.

Veloso A, Biewen B, Paulsen MT, Berg N, Carmo de Andrade Lima L, Prasad J, Bedi K, Magnuson B, Wilson TE, Ljungman M.

PLoS One. 2013 Oct 23;8(10):e78190. doi: 10.1371/journal.pone.0078190. eCollection 2013.


Use of Bru-Seq and BruChase-Seq for genome-wide assessment of the synthesis and stability of RNA.

Paulsen MT, Veloso A, Prasad J, Bedi K, Ljungman EA, Magnuson B, Wilson TE, Ljungman M.

Methods. 2014 May 1;67(1):45-54. doi: 10.1016/j.ymeth.2013.08.015. Epub 2013 Aug 21.


Tristetraprolin mediates radiation-induced TNF-α production in lung macrophages.

Ray D, Shukla S, Allam US, Helman A, Ramanand SG, Tran L, Bassetti M, Krishnamurthy PM, Rumschlag M, Paulsen M, Sun L, Shanley TP, Ljungman M, Nyati MK, Zhang M, Lawrence TS.

PLoS One. 2013;8(2):e57290. doi: 10.1371/journal.pone.0057290. Epub 2013 Feb 28.


Building on the past, shaping the future: the Environmental Mutagenesis and Genomics Society.

Wilson TE, DeMarini DM, Dertinger SD, Engelward BP, Hanawalt PC, MacGregor JT, Smith-Roe SL, Witt KL, Yauk CL, Ljungman M, Schwartz JL, Klein CB.

Environ Mol Mutagen. 2013 Apr;54(3):153-7. doi: 10.1002/em.21765. Epub 2013 Feb 26.


Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response.

Paulsen MT, Veloso A, Prasad J, Bedi K, Ljungman EA, Tsan YC, Chang CW, Tarrier B, Washburn JG, Lyons R, Robinson DR, Kumar-Sinha C, Wilson TE, Ljungman M.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2240-5. doi: 10.1073/pnas.1219192110. Epub 2013 Jan 23.


Pandemic influenza A(H1N1)pdm09 seroprevalence in Sweden before and after the pandemic and the vaccination campaign in 2009.

Mörner A, Bråve A, Kling AM, Kühlmann-Berenzon S, Krook K, Hedenskog M, Silhammar I, Ljungman M, Ortqvist A, Andersson S, Brytting M, Thorstensson R, Linde A.

PLoS One. 2012;7(12):e53511. doi: 10.1371/journal.pone.0053511. Epub 2012 Dec 28.


[The Swedish child vaccination program also reaches the children born abroad. Serologic samples show good protection compared to Swedish-born].

Andersson MA, Hallander H, Ljungman M, Norder H, Brytting M, Thorstensson R, Netterlid E.

Lakartidningen. 2012 Jan 18-24;109(3):94-8. Swedish. No abstract available.


Regulation of estrogen sulfotransferase expression by confluence of MCF10A breast epithelial cells: role of the aryl hydrocarbon receptor.

Fu J, Fang H, Paulsen M, Ljungman M, Kocarek TA, Runge-Morris M.

J Pharmacol Exp Ther. 2011 Nov;339(2):597-606. doi: 10.1124/jpet.111.185173. Epub 2011 Aug 9.


Chfr and RNF8 synergistically regulate ATM activation.

Wu J, Chen Y, Lu LY, Wu Y, Paulsen MT, Ljungman M, Ferguson DO, Yu X.

Nat Struct Mol Biol. 2011 Jun 26;18(7):761-8. doi: 10.1038/nsmb.2078.


p21CIP-1/WAF-1 induction is required to inhibit prostate cancer growth elicited by deficient expression of the Wnt inhibitor Dickkopf-1.

Hall CL, Zhang H, Baile S, Ljungman M, Kuhstoss S, Keller ET.

Cancer Res. 2010 Dec 1;70(23):9916-26. doi: 10.1158/0008-5472.CAN-10-0440. Epub 2010 Nov 23.

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