PubMed

Najm FJ, Strand C, Donovan KF, Hegde M, Sanson KR, Vaimberg EW, Sullender ME, Hartenian E, Kalani Z, Fusi N, Listgarten J, Younger ST, Bernstein BE, Root DE, Doench JG.

Nat Biotechnol. 2018 Feb;36(2):179-189. doi: 10.1038/nbt.4048. Epub 2017 Dec 18.

Fusi N, Listgarten J.

J Comput Biol. 2017 Jun;24(6):524-535. doi: 10.1089/cmb.2016.0174. Epub 2017 Jan 5.

Germanguz I, Listgarten J, Cinkornpumin J, Solomon A, Gaeta X, Lowry WE.

Stem Cell Res. 2016 May;16(3):712-24. doi: 10.1016/j.scr.2016.04.008. Epub 2016 Apr 13.

Doench JG, Fusi N, Sullender M, Hegde M, Vaimberg EW, Donovan KF, Smith I, Tothova Z, Wilen C, Orchard R, Virgin HW, Listgarten J, Root DE.

Nat Biotechnol. 2016 Feb;34(2):184-191. doi: 10.1038/nbt.3437. Epub 2016 Jan 18.

Dudley JT, Listgarten J, Stegle O, Brenner SE, Parts L.

Pac Symp Biocomput. 2015:342-6.

Widmer C, Lippert C, Weissbrod O, Fusi N, Kadie C, Davidson R, Listgarten J, Heckerman D.

Sci Rep. 2014 Nov 12;4:6874. doi: 10.1038/srep06874.

Patterson M, Gaeta X, Loo K, Edwards M, Smale S, Cinkornpumin J, Xie Y, Listgarten J, Azghadi S, Douglass SM, Pellegrini M, Lowry WE.

Stem Cell Reports. 2014 Nov 11;3(5):758-73. doi: 10.1016/j.stemcr.2014.08.015. Epub 2014 Oct 3.

Lippert C, Xiang J, Horta D, Widmer C, Kadie C, Heckerman D, Listgarten J.

Bioinformatics. 2014 Nov 15;30(22):3206-14. doi: 10.1093/bioinformatics/btu504. Epub 2014 Jul 29.

Zou J, Lippert C, Heckerman D, Aryee M, Listgarten J.

Nat Methods. 2014 Mar;11(3):309-11. doi: 10.1038/nmeth.2815. Epub 2014 Jan 26.

Listgarten J, Stegle O, Morris Q, Brenner SE, Parts L.

Pac Symp Biocomput. 2014;19:224-8. doi: 10.1142/9789814583220_0022. No abstract available.

Bartha I, Carlson JM, Brumme CJ, McLaren PJ, Brumme ZL, John M, Haas DW, Martinez-Picado J, Dalmau J, López-Galíndez C, Casado C, Rauch A, Günthard HF, Bernasconi E, Vernazza P, Klimkait T, Yerly S, O'Brien SJ, Listgarten J, Pfeifer N, Lippert C, Fusi N, Kutalik Z, Allen TM, Müller V, Harrigan PR, Heckerman D, Telenti A, Fellay J.

Elife. 2013 Oct 29;2:e01123. doi: 10.7554/eLife.01123.

Lippert C, Quon G, Kang EY, Kadie CM, Listgarten J, Heckerman D.

Sci Rep. 2013;3:1815. doi: 10.1038/srep01815.

Listgarten J, Lippert C, Heckerman D.

Nat Genet. 2013 May;45(5):470-1. doi: 10.1038/ng.2620. No abstract available.

Listgarten J, Lippert C, Kang EY, Xiang J, Kadie CM, Heckerman D.

Bioinformatics. 2013 Jun 15;29(12):1526-33. doi: 10.1093/bioinformatics/btt177. Epub 2013 Apr 18.

Morris Q, Brenner SE, Listgarten J, Stegle O.

Pac Symp Biocomput. 2013:456-8. No abstract available.

Stegle O, Brenner SE, Morris Q, Listgarten J.

Pac Symp Biocomput. 2013;18:171-174. No abstract available.

Lippert C, Listgarten J, Davidson RI, Baxter S, Poon H, Kadie CM, Heckerman D.

Sci Rep. 2013;3:1099. doi: 10.1038/srep01099. Epub 2013 Jan 22. Erratum in: Sci Rep. 2013 Feb 18;3:1321. Poong, Hoifung [corrected to Poon, Hoifung].

Quon G, Lippert C, Heckerman D, Listgarten J.

Nucleic Acids Res. 2013 Feb 1;41(4):2095-104. doi: 10.1093/nar/gks1449. Epub 2013 Jan 8.

Matthews PC, Listgarten J, Carlson JM, Payne R, Huang KH, Frater J, Goedhals D, Steyn D, van Vuuren C, Paioni P, Jooste P, Ogwu A, Shapiro R, Mncube Z, Ndung'u T, Walker BD, Heckerman D, Goulder PJ.

PLoS One. 2012;7(10):e47799. doi: 10.1371/journal.pone.0047799. Epub 2012 Oct 19.

Carlson JM, Brumme CJ, Martin E, Listgarten J, Brockman MA, Le AQ, Chui CK, Cotton LA, Knapp DJ, Riddler SA, Haubrich R, Nelson G, Pfeifer N, Deziel CE, Heckerman D, Apps R, Carrington M, Mallal S, Harrigan PR, John M, Brumme ZL; International HIV Adaptation Collaborative.

J Virol. 2012 Dec;86(24):13202-16. doi: 10.1128/JVI.01998-12. Epub 2012 Oct 10.

Listgarten J, Lippert C, Kadie CM, Davidson RI, Eskin E, Heckerman D.

Nat Methods. 2012 May 30;9(6):525-6. doi: 10.1038/nmeth.2037. No abstract available.

Zhang X, Cheng W, Listgarten J, Kadie C, Huang S, Wang W, Heckerman D.

PLoS One. 2012;7(5):e35762. doi: 10.1371/journal.pone.0035762. Epub 2012 May 7.

Carlson JM, Listgarten J, Pfeifer N, Tan V, Kadie C, Walker BD, Ndung'u T, Shapiro R, Frater J, Brumme ZL, Goulder PJ, Heckerman D.

J Virol. 2012 May;86(9):5230-43. doi: 10.1128/JVI.06728-11. Epub 2012 Feb 29.

Lippert C, Listgarten J, Liu Y, Kadie CM, Davidson RI, Heckerman D.

Nat Methods. 2011 Sep 4;8(10):833-5. doi: 10.1038/nmeth.1681.

Matthews PC, Adland E, Listgarten J, Leslie A, Mkhwanazi N, Carlson JM, Harndahl M, Stryhn A, Payne RP, Ogwu A, Huang KH, Frater J, Paioni P, Kloverpris H, Jooste P, Goedhals D, van Vuuren C, Steyn D, Riddell L, Chen F, Luzzi G, Balachandran T, Ndung'u T, Buus S, Carrington M, Shapiro R, Heckerman D, Goulder PJ.

J Immunol. 2011 May 15;186(10):5675-86. doi: 10.4049/jimmunol.1003711. Epub 2011 Apr 15.

Listgarten J, Kadie C, Schadt EE, Heckerman D.

Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16465-70. doi: 10.1073/pnas.1002425107. Epub 2010 Sep 1.

Leslie A, Matthews PC, Listgarten J, Carlson JM, Kadie C, Ndung'u T, Brander C, Coovadia H, Walker BD, Heckerman D, Goulder PJ.

J Virol. 2010 Oct;84(19):9879-88. doi: 10.1128/JVI.00320-10. Epub 2010 Jul 21.

Rousseau CM, Lockhart DW, Listgarten J, Maley SN, Kadie C, Learn GH, Nickle DC, Heckerman DE, Deng W, Brander C, Ndung'u T, Coovadia H, Goulder PJ, Korber BT, Walker BD, Mullins JI.

AIDS Res Hum Retroviruses. 2009 Mar;25(3):297-303. doi: 10.1089/aid.2008.0208.

Listgarten J, Brumme Z, Kadie C, Xiaojiang G, Walker B, Carrington M, Goulder P, Heckerman D.

PLoS Comput Biol. 2008 Feb 29;4(2):e1000016. doi: 10.1371/journal.pcbi.1000016.

Young LC, Listgarten J, Trotter MJ, Andrew SE, Tron VA.

Br J Dermatol. 2008 Jan;158(1):59-69. Epub 2007 Oct 26.

Listgarten J, Frahm N, Kadie C, Brander C, Heckerman D.

PLoS Comput Biol. 2007 Oct;3(10):1879-86.

Frahm N, Yusim K, Suscovich TJ, Adams S, Sidney J, Hraber P, Hewitt HS, Linde CH, Kavanagh DG, Woodberry T, Henry LM, Faircloth K, Listgarten J, Kadie C, Jojic N, Sango K, Brown NV, Pae E, Zaman MT, Bihl F, Khatri A, John M, Mallal S, Marincola FM, Walker BD, Sette A, Heckerman D, Korber BT, Brander C.

Eur J Immunol. 2007 Sep;37(9):2419-33.

Heckerman D, Kadie C, Listgarten J.

J Comput Biol. 2007 Jul-Aug;14(6):736-46.

Listgarten J, Neal RM, Roweis ST, Wong P, Emili A.

Bioinformatics. 2007 Jan 15;23(2):e198-204.

Listgarten J, Emili A.

Drug Discov Today. 2005 Dec;10(23-24):1697-702.

Dicken BJ, Graham K, Hamilton SM, Andrews S, Lai R, Listgarten J, Jhangri GS, Saunders LD, Damaraju S, Cass C.

Ann Surg. 2006 Jan;243(1):64-73.

Listgarten J, Emili A.

Mol Cell Proteomics. 2005 Apr;4(4):419-34. Epub 2005 Mar 1. Review.

Listgarten J, Graham K, Damaraju S, Cass C, Mackey J, Zanke B.

Appl Bioinformatics. 2003;2(4):219-28.

Listgarten J, Damaraju S, Poulin B, Cook L, Dufour J, Driga A, Mackey J, Wishart D, Greiner R, Zanke B.

Clin Cancer Res. 2004 Apr 15;10(8):2725-37.

Listgarten JN, Maes D, Wyns L, Aguilar CF, Palmer RA.

Acta Crystallogr D Biol Crystallogr. 1995 Sep 1;51(Pt 5):767-71.