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Items: 31

1.

The DNA Methyltransferase 1 (DNMT1) Controls the Shape and Dynamics of Migrating POA-Derived Interneurons Fated for the Murine Cerebral Cortex.

Pensold D, Symmank J, Hahn A, Lingner T, Salinas-Riester G, Downie BR, Ludewig F, Rotzsch A, Haag N, Andreas N, Schubert K, Hübner CA, Pieler T, Zimmer G.

Cereb Cortex. 2017 Dec 1;27(12):5696-5714. doi: 10.1093/cercor/bhw341.

PMID:
29117290
2.

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC.

Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2.

PMID:
28967888
3.

Hepatic gene therapy rescues high-fat diet responses in circadian Clock mutant mice.

Meyer-Kovac J, Kolbe I, Ehrhardt L, Leliavski A, Husse J, Salinas G, Lingner T, Tsang AH, Barclay JL, Oster H.

Mol Metab. 2017 Mar 29;6(6):512-523. doi: 10.1016/j.molmet.2017.03.008. eCollection 2017 Jun.

4.

mRNA quality control is bypassed for immediate export of stress-responsive transcripts.

Zander G, Hackmann A, Bender L, Becker D, Lingner T, Salinas G, Krebber H.

Nature. 2016 Dec 12. doi: 10.1038/nature20572. [Epub ahead of print]

PMID:
27951587
5.

The functional readthrough extension of malate dehydrogenase reveals a modification of the genetic code.

Hofhuis J, Schueren F, Nötzel C, Lingner T, Gärtner J, Jahn O, Thoms S.

Open Biol. 2016 Nov;6(11). pii: 160246.

6.

The SCN Clock Governs Circadian Transcription Rhythms in Murine Epididymal White Adipose Tissue.

Kolbe I, Husse J, Salinas G, Lingner T, Astiz M, Oster H.

J Biol Rhythms. 2016 Dec;31(6):577-587. doi: 10.1177/0748730416666170. Epub 2016 Sep 21.

PMID:
27650461
7.

Identification of New Fungal Peroxisomal Matrix Proteins and Revision of the PTS1 Consensus.

Nötzel C, Lingner T, Klingenberg H, Thoms S.

Traffic. 2016 Oct;17(10):1110-24. doi: 10.1111/tra.12426. Epub 2016 Aug 22.

8.

The transcriptomes of novel marmoset monkey embryonic stem cell lines reflect distinct genomic features.

Debowski K, Drummer C, Lentes J, Cors M, Dressel R, Lingner T, Salinas-Riester G, Fuchs S, Sasaki E, Behr R.

Sci Rep. 2016 Jul 7;6:29122. doi: 10.1038/srep29122.

9.

MiR144/451 Expression Is Repressed by RUNX1 During Megakaryopoiesis and Disturbed by RUNX1/ETO.

Kohrs N, Kolodziej S, Kuvardina ON, Herglotz J, Yillah J, Herkt S, Piechatzek A, Salinas Riester G, Lingner T, Wichmann C, Bonig H, Seifried E, Platzbecker U, Medyouf H, Grez M, Lausen J.

PLoS Genet. 2016 Mar 18;12(3):e1005946. doi: 10.1371/journal.pgen.1005946. eCollection 2016 Mar.

10.

Characterization, prediction and evolution of plant peroxisomal targeting signals type 1 (PTS1s).

Reumann S, Chowdhary G, Lingner T.

Biochim Biophys Acta. 2016 May;1863(5):790-803. doi: 10.1016/j.bbamcr.2016.01.001. Epub 2016 Jan 6. Review.

11.

Modulation of CNS autoimmune responses by CD8(+) T cells coincides with their oligoclonal expansion.

Fischer HJ, van den Brandt J, Lingner T, Odoardi F, Flügel A, Weishaupt A, Reichardt HM.

J Neuroimmunol. 2016 Jan 15;290:26-32. doi: 10.1016/j.jneuroim.2015.10.020. Epub 2015 Oct 29.

PMID:
26711565
12.

SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs.

Zautner AE, Goldschmidt AM, Thürmer A, Schuldes J, Bader O, Lugert R, Groß U, Stingl K, Salinas G, Lingner T.

BMC Genomics. 2015 Dec 21;16:1088. doi: 10.1186/s12864-015-2317-3.

13.

Global analysis of asymmetric RNA enrichment in oocytes reveals low conservation between closely related Xenopus species.

Claußen M, Lingner T, Pommerenke C, Opitz L, Salinas G, Pieler T.

Mol Biol Cell. 2015 Nov 1;26(21):3777-87. doi: 10.1091/mbc.E15-02-0115. Epub 2015 Sep 2.

14.

Thymocyte-derived BDNF influences T-cell maturation at the DN3/DN4 transition stage.

Linker RA, Lee DH, Flach AC, Litke T, van den Brandt J, Reichardt HM, Lingner T, Bommhardt U, Sendtner M, Gold R, Flügel A, Lühder F.

Eur J Immunol. 2015 May;45(5):1326-38. doi: 10.1002/eji.201444985. Epub 2015 Feb 19.

15.

Peroxisomal lactate dehydrogenase is generated by translational readthrough in mammals.

Schueren F, Lingner T, George R, Hofhuis J, Dickel C, Gärtner J, Thoms S.

Elife. 2014 Sep 23;3:e03640. doi: 10.7554/eLife.03640.

16.

Exploring neighborhoods in the metagenome universe.

Aßhauer KP, Klingenberg H, Lingner T, Meinicke P.

Int J Mol Sci. 2014 Jul 14;15(7):12364-78. doi: 10.3390/ijms150712364.

17.

Protein signature-based estimation of metagenomic abundances including all domains of life and viruses.

Klingenberg H, Aßhauer KP, Lingner T, Meinicke P.

Bioinformatics. 2013 Apr 15;29(8):973-80. doi: 10.1093/bioinformatics/btt077. Epub 2013 Feb 15.

18.

PredPlantPTS1: A Web Server for the Prediction of Plant Peroxisomal Proteins.

Reumann S, Buchwald D, Lingner T.

Front Plant Sci. 2012 Aug 27;3:194. doi: 10.3389/fpls.2012.00194. eCollection 2012.

19.
20.

Experimental and statistical post-validation of positive example EST sequences carrying peroxisome targeting signals type 1 (PTS1).

Lingner T, Kataya AR, Reumann S.

Plant Signal Behav. 2012 Feb;7(2):263-8. doi: 10.4161/psb.18720. Epub 2012 Feb 1.

21.

CoMet--a web server for comparative functional profiling of metagenomes.

Lingner T, Asshauer KP, Schreiber F, Meinicke P.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W518-23. doi: 10.1093/nar/gkr388. Epub 2011 May 26.

22.

Mixture models for analysis of the taxonomic composition of metagenomes.

Meinicke P, Asshauer KP, Lingner T.

Bioinformatics. 2011 Jun 15;27(12):1618-24. doi: 10.1093/bioinformatics/btr266. Epub 2011 May 5.

23.

Identification of novel plant peroxisomal targeting signals by a combination of machine learning methods and in vivo subcellular targeting analyses.

Lingner T, Kataya AR, Antonicelli GE, Benichou A, Nilssen K, Chen XY, Siemsen T, Morgenstern B, Meinicke P, Reumann S.

Plant Cell. 2011 Apr;23(4):1556-72. doi: 10.1105/tpc.111.084095. Epub 2011 Apr 12.

24.

Predicting phenotypic traits of prokaryotes from protein domain frequencies.

Lingner T, Mühlhausen S, Gabaldón T, Notredame C, Meinicke P.

BMC Bioinformatics. 2010 Sep 24;11:481. doi: 10.1186/1471-2105-11-481.

25.

Orphelia: predicting genes in metagenomic sequencing reads.

Hoff KJ, Lingner T, Meinicke P, Tech M.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W101-5. doi: 10.1093/nar/gkp327. Epub 2009 May 8.

26.

MarVis: a tool for clustering and visualization of metabolic biomarkers.

Kaever A, Lingner T, Feussner K, Göbel C, Feussner I, Meinicke P.

BMC Bioinformatics. 2009 Mar 20;10:92. doi: 10.1186/1471-2105-10-92.

27.

Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps.

Meinicke P, Lingner T, Kaever A, Feussner K, Göbel C, Feussner I, Karlovsky P, Morgenstern B.

Algorithms Mol Biol. 2008 Jun 26;3:9. doi: 10.1186/1748-7188-3-9.

28.

Word correlation matrices for protein sequence analysis and remote homology detection.

Lingner T, Meinicke P.

BMC Bioinformatics. 2008 Jun 3;9:259. doi: 10.1186/1471-2105-9-259.

29.

Gene prediction in metagenomic fragments: a large scale machine learning approach.

Hoff KJ, Tech M, Lingner T, Daniel R, Morgenstern B, Meinicke P.

BMC Bioinformatics. 2008 Apr 28;9:217. doi: 10.1186/1471-2105-9-217.

30.

Remote homology detection based on oligomer distances.

Lingner T, Meinicke P.

Bioinformatics. 2006 Sep 15;22(18):2224-31. Epub 2006 Jul 12.

PMID:
16837522
31.

BCI Competition 2003--Data set IIb: support vector machines for the P300 speller paradigm.

Kaper M, Meinicke P, Grossekathoefer U, Lingner T, Ritter H.

IEEE Trans Biomed Eng. 2004 Jun;51(6):1073-6.

PMID:
15188881

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