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Items: 14

1.

RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases.

Battaglia S, Lidschreiber M, Baejen C, Torkler P, Vos SM, Cramer P.

Elife. 2017 May 24;6. pii: e25637. doi: 10.7554/eLife.25637.

2.

Genome-wide Analysis of RNA Polymerase II Termination at Protein-Coding Genes.

Baejen C, Andreani J, Torkler P, Battaglia S, Schwalb B, Lidschreiber M, Maier KC, Boltendahl A, Rus P, Esslinger S, Söding J, Cramer P.

Mol Cell. 2017 Apr 6;66(1):38-49.e6. doi: 10.1016/j.molcel.2017.02.009. Epub 2017 Mar 16.

3.

Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle.

Zacher B, Lidschreiber M, Cramer P, Gagneur J, Tresch A.

Mol Syst Biol. 2014 Dec 19;10:768. doi: 10.15252/msb.20145654.

4.

Molecular basis for coordinating transcription termination with noncoding RNA degradation.

Tudek A, Porrua O, Kabzinski T, Lidschreiber M, Kubicek K, Fortova A, Lacroute F, Vanacova S, Cramer P, Stefl R, Libri D.

Mol Cell. 2014 Aug 7;55(3):467-81. doi: 10.1016/j.molcel.2014.05.031. Epub 2014 Jul 24.

5.

RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7.

Schreieck A, Easter AD, Etzold S, Wiederhold K, Lidschreiber M, Cramer P, Passmore LA.

Nat Struct Mol Biol. 2014 Feb;21(2):175-179. doi: 10.1038/nsmb.2753. Epub 2014 Jan 12.

6.

The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the nuclear exosome.

Heo DH, Yoo I, Kong J, Lidschreiber M, Mayer A, Choi BY, Hahn Y, Cramer P, Buratowski S, Kim M.

J Biol Chem. 2013 Dec 20;288(51):36676-90. doi: 10.1074/jbc.M113.508267. Epub 2013 Nov 6.

7.

Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue.

Kinkelin K, Wozniak GG, Rothbart SB, Lidschreiber M, Strahl BD, Cramer P.

Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15277-82. doi: 10.1073/pnas.1311010110. Epub 2013 Sep 3.

8.

Cap completion and C-terminal repeat domain kinase recruitment underlie the initiation-elongation transition of RNA polymerase II.

Lidschreiber M, Leike K, Cramer P.

Mol Cell Biol. 2013 Oct;33(19):3805-16. doi: 10.1128/MCB.00361-13. Epub 2013 Jul 22.

9.

Reciprocal regulation of protein synthesis and carbon metabolism for thylakoid membrane biogenesis.

Bohne AV, Schwarz C, Schottkowski M, Lidschreiber M, Piotrowski M, Zerges W, Nickelsen J.

PLoS Biol. 2013;11(2):e1001482. doi: 10.1371/journal.pbio.1001482. Epub 2013 Feb 12.

10.

Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection.

Marcinowski L, Lidschreiber M, Windhager L, Rieder M, Bosse JB, Rädle B, Bonfert T, Györy I, de Graaf M, Prazeres da Costa O, Rosenstiel P, Friedel CC, Zimmer R, Ruzsics Z, Dölken L.

PLoS Pathog. 2012 Sep;8(9):e1002908. doi: 10.1371/journal.ppat.1002908. Epub 2012 Sep 6.

11.

CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II.

Mayer A, Heidemann M, Lidschreiber M, Schreieck A, Sun M, Hintermair C, Kremmer E, Eick D, Cramer P.

Science. 2012 Jun 29;336(6089):1723-5. doi: 10.1126/science.1219651.

12.

MC EMiNEM maps the interaction landscape of the Mediator.

Niederberger T, Etzold S, Lidschreiber M, Maier KC, Martin DE, Fröhlich H, Cramer P, Tresch A.

PLoS Comput Biol. 2012;8(6):e1002568. doi: 10.1371/journal.pcbi.1002568. Epub 2012 Jun 21.

13.

The spt5 C-terminal region recruits yeast 3' RNA cleavage factor I.

Mayer A, Schreieck A, Lidschreiber M, Leike K, Martin DE, Cramer P.

Mol Cell Biol. 2012 Apr;32(7):1321-31. doi: 10.1128/MCB.06310-11. Epub 2012 Jan 30.

14.

Uniform transitions of the general RNA polymerase II transcription complex.

Mayer A, Lidschreiber M, Siebert M, Leike K, Söding J, Cramer P.

Nat Struct Mol Biol. 2010 Oct;17(10):1272-8. doi: 10.1038/nsmb.1903. Epub 2010 Sep 5.

PMID:
20818391

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