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Items: 1 to 50 of 80

1.

High-resolution transcription maps reveal the widespread impact of roadblock termination in yeast.

Candelli T, Challal D, Briand JB, Boulay J, Porrua O, Colin J, Libri D.

EMBO J. 2018 Feb 15;37(4). pii: e97490. doi: 10.15252/embj.201797490. Epub 2018 Jan 19.

PMID:
29351914
2.

Binding to RNA regulates Set1 function.

Luciano P, Jeon J, El-Kaoutari A, Challal D, Bonnet A, Barucco M, Candelli T, Jourquin F, Lesage P, Kim J, Libri D, Géli V.

Cell Discov. 2017 Oct 24;3:17040. doi: 10.1038/celldisc.2017.40. eCollection 2017.

3.

Ubiquitination-dependent control of sexual differentiation in fission yeast.

Simonetti F, Candelli T, Leon S, Libri D, Rougemaille M.

Elife. 2017 Aug 25;6. pii: e28046. doi: 10.7554/eLife.28046.

4.

Sen1 has unique structural features grafted on the architecture of the Upf1-like helicase family.

Leonaitė B, Han Z, Basquin J, Bonneau F, Libri D, Porrua O, Conti E.

EMBO J. 2017 Jun 1;36(11):1590-1604. doi: 10.15252/embj.201696174. Epub 2017 Apr 13.

5.

Biochemical characterization of the helicase Sen1 provides new insights into the mechanisms of non-coding transcription termination.

Han Z, Libri D, Porrua O.

Nucleic Acids Res. 2017 Feb 17;45(3):1355-1370. doi: 10.1093/nar/gkw1230.

6.

The Chromatin Remodeler ISW1 Is a Quality Control Factor that Surveys Nuclear mRNP Biogenesis.

Babour A, Shen Q, Dos-Santos J, Murray S, Gay A, Challal D, Fasken M, Palancade B, Corbett A, Libri D, Mellor J, Dargemont C.

Cell. 2016 Nov 17;167(5):1201-1214.e15. doi: 10.1016/j.cell.2016.10.048.

7.

Transcription Termination: Variations on Common Themes.

Porrua O, Boudvillain M, Libri D.

Trends Genet. 2016 Aug;32(8):508-22. doi: 10.1016/j.tig.2016.05.007. Epub 2016 Jun 28. Review.

PMID:
27371117
8.

Endless Quarrels at the End of Genes.

Libri D.

Mol Cell. 2015 Oct 15;60(2):192-4. doi: 10.1016/j.molcel.2015.10.004.

9.

Non-coding transcription by RNA polymerase II in yeast: Hasard or nécessité?

Tudek A, Candelli T, Libri D.

Biochimie. 2015 Oct;117:28-36. doi: 10.1016/j.biochi.2015.04.020. Epub 2015 May 6. Review.

PMID:
25956976
10.

Sleeping Beauty and the Beast (of pervasive transcription).

Libri D.

RNA. 2015 Apr;21(4):678-9. doi: 10.1261/rna.050948.115. No abstract available.

11.

Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.

Zhang W, Collinet B, Graille M, Daugeron MC, Lazar N, Libri D, Durand D, van Tilbeurgh H.

Nucleic Acids Res. 2015 Mar 31;43(6):3358-72. doi: 10.1093/nar/gkv155. Epub 2015 Mar 3.

12.

Transcription termination and the control of the transcriptome: why, where and how to stop.

Porrua O, Libri D.

Nat Rev Mol Cell Biol. 2015 Mar;16(3):190-202. doi: 10.1038/nrm3943. Epub 2015 Feb 4. Review.

PMID:
25650800
13.

Characterization of the mechanisms of transcription termination by the helicase Sen1.

Porrua O, Libri D.

Methods Mol Biol. 2015;1259:313-31. doi: 10.1007/978-1-4939-2214-7_19.

PMID:
25579594
14.

Roadblock termination by reb1p restricts cryptic and readthrough transcription.

Colin J, Candelli T, Porrua O, Boulay J, Zhu C, Lacroute F, Steinmetz LM, Libri D.

Mol Cell. 2014 Dec 4;56(5):667-80. doi: 10.1016/j.molcel.2014.10.026.

15.

Molecular basis for coordinating transcription termination with noncoding RNA degradation.

Tudek A, Porrua O, Kabzinski T, Lidschreiber M, Kubicek K, Fortova A, Lacroute F, Vanacova S, Cramer P, Stefl R, Libri D.

Mol Cell. 2014 Aug 7;55(3):467-81. doi: 10.1016/j.molcel.2014.05.031. Epub 2014 Jul 24.

16.

The role of Ctk1 kinase in termination of small non-coding RNAs.

Lenstra TL, Tudek A, Clauder S, Xu Z, Pachis ST, van Leenen D, Kemmeren P, Steinmetz LM, Libri D, Holstege FC.

PLoS One. 2013 Dec 4;8(12):e80495. doi: 10.1371/journal.pone.0080495. eCollection 2013.

17.

Germline prokineticin receptor 2 (PROKR2) variants associated with central hypogonadism cause differental modulation of distinct intracellular pathways.

Libri DV, Kleinau G, Vezzoli V, Busnelli M, Guizzardi F, Sinisi AA, Pincelli AI, Mancini A, Russo G, Beck-Peccoz P, Loche S, Crivellaro C, Maghnie M, Krausz C, Persani L, Bonomi M; Italian Study Group on Idiopathic Central Hypogonadism (ICH).

J Clin Endocrinol Metab. 2014 Mar;99(3):E458-63. doi: 10.1210/jc.2013-2431. Epub 2013 Nov 25.

18.

Dealing with pervasive transcription.

Jensen TH, Jacquier A, Libri D.

Mol Cell. 2013 Nov 21;52(4):473-84. doi: 10.1016/j.molcel.2013.10.032. Review.

19.

High-frequency promoter firing links THO complex function to heavy chromatin formation.

Mouaikel J, Causse SZ, Rougemaille M, Daubenton-Carafa Y, Blugeon C, Lemoine S, Devaux F, Darzacq X, Libri D.

Cell Rep. 2013 Nov 27;5(4):1082-94. doi: 10.1016/j.celrep.2013.10.013. Epub 2013 Nov 7.

20.

A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast.

Porrua O, Libri D.

Nat Struct Mol Biol. 2013 Jul;20(7):884-91. doi: 10.1038/nsmb.2592. Epub 2013 Jun 9.

PMID:
23748379
21.

The unusual adequate development of a child with severe central hypothyroidsm negative at neonatal thyrotropin screening.

Libri DV, Trettene A, Bonomi M, Beck-Peccoz P, Persani L, Salvatoni A.

J Endocrinol Invest. 2013 Oct;36(9):788-9. doi: 10.3275/8963. Epub 2013 May 10. No abstract available.

PMID:
23665514
22.

RNA quality control in the nucleus: the Angels' share of RNA.

Porrua O, Libri D.

Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):604-11. doi: 10.1016/j.bbagrm.2013.02.012. Epub 2013 Mar 7. Review.

PMID:
23474120
23.

In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination.

Porrua O, Hobor F, Boulay J, Kubicek K, D'Aubenton-Carafa Y, Gudipati RK, Stefl R, Libri D.

EMBO J. 2012 Oct 3;31(19):3935-48. doi: 10.1038/emboj.2012.237. Epub 2012 Aug 28.

24.

Extensive degradation of RNA precursors by the exosome in wild-type cells.

Gudipati RK, Xu Z, Lebreton A, Séraphin B, Steinmetz LM, Jacquier A, Libri D.

Mol Cell. 2012 Nov 9;48(3):409-21. doi: 10.1016/j.molcel.2012.08.018. Epub 2012 Sep 20.

25.

Ers1 links HP1 to RNAi.

Rougemaille M, Braun S, Coyle S, Dumesic PA, Garcia JF, Isaac RS, Libri D, Narlikar GJ, Madhani HD.

Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11258-63. doi: 10.1073/pnas.1204947109. Epub 2012 Jun 25.

26.

New understandings of the genetic basis of isolated idiopathic central hypogonadism.

Bonomi M, Libri DV, Guizzardi F, Guarducci E, Maiolo E, Pignatti E, Asci R, Persani L; Idiopathic Central Hypogonadism Study Group of the Italian Societies of Endocrinology and Pediatric Endocrinology and Diabetes.

Asian J Androl. 2012 Jan;14(1):49-56. doi: 10.1038/aja.2011.68. Epub 2011 Dec 5. Review.

27.

Frequent TSH receptor genetic alterations with variable signaling impairment in a large series of children with nonautoimmune isolated hyperthyrotropinemia.

Calebiro D, Gelmini G, Cordella D, Bonomi M, Winkler F, Biebermann H, de Marco A, Marelli F, Libri DV, Antonica F, Vigone MC, Cappa M, Mian C, Sartorio A, Beck-Peccoz P, Radetti G, Weber G, Persani L.

J Clin Endocrinol Metab. 2012 Jan;97(1):E156-60. doi: 10.1210/jc.2011-1938. Epub 2011 Nov 2.

PMID:
22049173
28.

Implication of Ccr4-Not complex function in mRNA quality control in Saccharomyces cerevisiae.

Assenholt J, Mouaikel J, Saguez C, Rougemaille M, Libri D, Jensen TH.

RNA. 2011 Oct;17(10):1788-94. doi: 10.1261/rna.2919911. Epub 2011 Aug 23.

29.

Control of cryptic transcription in eukaryotes.

Rougemaille M, Libri D.

Adv Exp Med Biol. 2011;702:122-31. doi: 10.1007/978-1-4419-7841-7_10.

PMID:
21713682
30.

Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t6A modification of tRNAs.

Daugeron MC, Lenstra TL, Frizzarin M, El Yacoubi B, Liu X, Baudin-Baillieu A, Lijnzaad P, Decourty L, Saveanu C, Jacquier A, Holstege FC, de Crécy-Lagard V, van Tilbeurgh H, Libri D.

Nucleic Acids Res. 2011 Aug;39(14):6148-60. doi: 10.1093/nar/gkr178. Epub 2011 Apr 1.

31.

Cryptic transcription and early termination in the control of gene expression.

Colin J, Libri D, Porrua O.

Genet Res Int. 2011;2011:653494. doi: 10.4061/2011/653494. Epub 2011 Nov 24.

32.

Nuclear mRNA quality control in yeast is mediated by Nrd1 co-transcriptional recruitment, as revealed by the targeting of Rho-induced aberrant transcripts.

Honorine R, Mosrin-Huaman C, Hervouet-Coste N, Libri D, Rahmouni AR.

Nucleic Acids Res. 2011 Apr;39(7):2809-20. doi: 10.1093/nar/gkq1192. Epub 2010 Nov 26.

33.

Sex matters in the birth of genes.

Colin J, Libri D, Villa T.

Cell Res. 2010 May;20(5):499-501. doi: 10.1038/cr.2010.58. No abstract available.

PMID:
20436507
34.

Nuclear poly(a)-binding proteins and nuclear degradation: take the mRNA and run?

Libri D.

Mol Cell. 2010 Jan 15;37(1):3-5. doi: 10.1016/j.molcel.2009.12.029.

35.

Genetics and phenomics of hypothyroidism due to TSH resistance.

Persani L, Calebiro D, Cordella D, Weber G, Gelmini G, Libri D, de Filippis T, Bonomi M.

Mol Cell Endocrinol. 2010 Jun 30;322(1-2):72-82. doi: 10.1016/j.mce.2010.01.008. Epub 2010 Jan 18. Review.

PMID:
20083154
36.

Control of cryptic transcription in eukaryotes.

Rougemaille M, Libri D.

Adv Exp Med Biol. 2010;702:122-31. Review.

PMID:
21618879
37.

Chapter 10. Estimating nuclear mRNA decay in Saccharomyces cerevisiae.

Schmid M, Rougemaille M, Libri D, Jensen TH.

Methods Enzymol. 2008;449:205-19. doi: 10.1016/S0076-6879(08)02410-5.

PMID:
19215760
38.

Structure of the archaeal Kae1/Bud32 fusion protein MJ1130: a model for the eukaryotic EKC/KEOPS subcomplex.

Hecker A, Lopreiato R, Graille M, Collinet B, Forterre P, Libri D, van Tilbeurgh H.

EMBO J. 2008 Sep 3;27(17):2340-51. doi: 10.1038/emboj.2008.157.

39.

THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.

Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RK, Lemoine S, Blugeon C, Boulay J, Jensen TH, Stutz F, Devaux F, Libri D.

Cell. 2008 Oct 17;135(2):308-21. doi: 10.1016/j.cell.2008.08.005.

40.

Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants.

Assenholt J, Mouaikel J, Andersen KR, Brodersen DE, Libri D, Jensen TH.

RNA. 2008 Nov;14(11):2305-13. doi: 10.1261/rna.1108008. Epub 2008 Sep 29.

41.

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae.

Thiebaut M, Colin J, Neil H, Jacquier A, Séraphin B, Lacroute F, Libri D.

Mol Cell. 2008 Sep 5;31(5):671-82. doi: 10.1016/j.molcel.2008.08.010.

42.

Quality control: Cell and the city.

Libri D.

Biochim Biophys Acta. 2008 Sep;1779(9):523. doi: 10.1016/j.bbagrm.2008.08.008. No abstract available.

PMID:
18774537
43.

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice.

Gudipati RK, Villa T, Boulay J, Libri D.

Nat Struct Mol Biol. 2008 Aug;15(8):786-94. doi: 10.1038/nsmb.1460. Epub 2008 Jul 27.

PMID:
18660821
44.

Nuclear quality control of RNA polymerase II ribonucleoproteins in yeast: tilting the balance to shape the transcriptome.

Villa T, Rougemaille M, Libri D.

Biochim Biophys Acta. 2008 Sep;1779(9):524-31. doi: 10.1016/j.bbagrm.2008.06.009. Epub 2008 Jul 1. Review.

PMID:
18644474
45.

mRNA journey to the cytoplasm: attire required.

Rougemaille M, Villa T, Gudipati RK, Libri D.

Biol Cell. 2008 Jun;100(6):327-42. doi: 10.1042/BC20070143. Review.

PMID:
18479253
46.

Binding of an aptamer to the N-terminal fragment of VCAM-1.

Chauveau F, Aissouni Y, Hamm J, Boutin H, Libri D, Ducongé F, Tavitian B.

Bioorg Med Chem Lett. 2007 Nov 15;17(22):6119-22. Epub 2007 Sep 15.

PMID:
17905582
47.

Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants.

Rougemaille M, Gudipati RK, Olesen JR, Thomsen R, Seraphin B, Libri D, Jensen TH.

EMBO J. 2007 May 2;26(9):2317-26. Epub 2007 Apr 5.

48.

Comparison of different strategies to select aptamers against a transmembrane protein target.

Pestourie C, Cerchia L, Gombert K, Aissouni Y, Boulay J, De Franciscis V, Libri D, Tavitian B, Ducongé F.

Oligonucleotides. 2006 Winter;16(4):323-35.

PMID:
17155908
49.

A link between transcription and mRNP quality in Saccharomyces cerevisiae.

Olesen JR, Libri D, Jensen TH.

RNA Biol. 2005 Apr;2(2):45-8. Epub 2005 Apr 18. Review.

PMID:
17132939
50.

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance.

Thiebaut M, Kisseleva-Romanova E, Rougemaille M, Boulay J, Libri D.

Mol Cell. 2006 Sep 15;23(6):853-64.

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