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Human Accelerated Regions and Other Human-Specific Sequence Variations in the Context of Evolution and Their Relevance for Brain Development.

Levchenko A, Kanapin A, Samsonova A, Gainetdinov RR.

Genome Biol Evol. 2018 Jan 1;10(1):166-188. doi: 10.1093/gbe/evx240.


Sub-MW peak power diffraction-limited chirped-pulse monolithic Yb-doped tapered fiber amplifier.

Bobkov K, Andrianov A, Koptev M, Muravyev S, Levchenko A, Velmiskin V, Aleshkina S, Semjonov S, Lipatov D, Guryanov A, Kim A, Likhachev M.

Opt Express. 2017 Oct 30;25(22):26958-26972. doi: 10.1364/OE.25.026958.


Brachyury-YAP Regulatory Axis Drives Stemness and Growth in Cancer.

Shah SR, David JM, Tippens ND, Mohyeldin A, Martinez-Gutierrez JC, Ganaha S, Schiapparelli P, Hamilton DH, Palena C, Levchenko A, Quiñones-Hinojosa A.

Cell Rep. 2017 Oct 10;21(2):495-507. doi: 10.1016/j.celrep.2017.09.057.


The novel technique of microwave heating of infant formulas and human milk with direct temperature monitoring.

Levchenko A, Lukoyanova O, Borovik T, Levchenko M, Sevostianov D, Sadchikov P.

J Biol Regul Homeost Agents. 2017 Apr-Jun;31(2):353-357.


Mechanochemical feedback underlies coexistence of qualitatively distinct cell polarity patterns within diverse cell populations.

Park J, Holmes WR, Lee SH, Kim HN, Kim DH, Kwak MK, Wang CJ, Edelstein-Keshet L, Levchenko A.

Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):E5750-E5759. doi: 10.1073/pnas.1700054114. Epub 2017 Jun 27.


Combined HMG-COA reductase and prenylation inhibition in treatment of CCM.

Nishimura S, Mishra-Gorur K, Park J, Surovtseva YV, Sebti SM, Levchenko A, Louvi A, Gunel M.

Proc Natl Acad Sci U S A. 2017 May 23;114(21):5503-5508. doi: 10.1073/pnas.1702942114. Epub 2017 May 12.


A mathematical model coupling polarity signaling to cell adhesion explains diverse cell migration patterns.

Holmes WR, Park J, Levchenko A, Edelstein-Keshet L.

PLoS Comput Biol. 2017 May 4;13(5):e1005524. doi: 10.1371/journal.pcbi.1005524. eCollection 2017 May.


Computation and measurement of cell decision making errors using single cell data.

Habibi I, Cheong R, Lipniacki T, Levchenko A, Emamian ES, Abdi A.

PLoS Comput Biol. 2017 Apr 5;13(4):e1005436. doi: 10.1371/journal.pcbi.1005436. eCollection 2017 Apr.


Chiral Second-Sound Collective Modes at the Edge of 2D Systems with a Nontrivial Berry Curvature.

Principi A, Katsnelson MI, Levchenko A.

Phys Rev Lett. 2017 Jan 20;118(3):036802. doi: 10.1103/PhysRevLett.118.036802. Epub 2017 Jan 20.


Kerr Effect from Diffractive Skew Scattering in Chiral p_{x}±ip_{y} Superconductors.

König EJ, Levchenko A.

Phys Rev Lett. 2017 Jan 13;118(2):027001. doi: 10.1103/PhysRevLett.118.027001. Epub 2017 Jan 9.


Brain-on-a-chip model enables analysis of human neuronal differentiation and chemotaxis.

Kilic O, Pamies D, Lavell E, Schiapparelli P, Feng Y, Hartung T, Bal-Price A, Hogberg HT, Quinones-Hinojosa A, Guerrero-Cazares H, Levchenko A.

Lab Chip. 2016 Oct 18;16(21):4152-4162.


Giant superconducting fluctuations in the compensated semimetal FeSe at the BCS-BEC crossover.

Kasahara S, Yamashita T, Shi A, Kobayashi R, Shimoyama Y, Watashige T, Ishida K, Terashima T, Wolf T, Hardy F, Meingast C, Löhneysen HV, Levchenko A, Shibauchi T, Matsuda Y.

Nat Commun. 2016 Sep 30;7:12843. doi: 10.1038/ncomms12843.


Single-cell dynamics and variability of MAPK activity in a yeast differentiation pathway.

Conlon P, Gelin-Licht R, Ganesan A, Zhang J, Levchenko A.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):E5896-E5905. Epub 2016 Sep 20.


Negative Coulomb Drag in Double Bilayer Graphene.

Li JI, Taniguchi T, Watanabe K, Hone J, Levchenko A, Dean CR.

Phys Rev Lett. 2016 Jul 22;117(4):046802. doi: 10.1103/PhysRevLett.117.046802. Epub 2016 Jul 18.


Two interferon-independent double-stranded RNA-induced host defense strategies suppress the common cold virus at warm temperature.

Foxman EF, Storer JA, Vanaja K, Levchenko A, Iwasaki A.

Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):8496-501. doi: 10.1073/pnas.1601942113. Epub 2016 Jul 11.


217 YAP Is Ready to Rac and Rho: Elucidation of a Novel YAP-Driven Network That Potentiates Brain Cancer Cell Dispersal and Confers Poor Survival in Patients.

Shah SR, Tippens N, Park J, Mohyeldin A, Vela G, Martinez-Gutierrez JC, Margolis SS, Schmidt S, Levchenko A, Quinones-Hinojosa A.

Neurosurgery. 2016 Aug;63 Suppl 1:185. doi: 10.1227/01.neu.0000489786.22041.2d.


Migration Phenotype of Brain-Cancer Cells Predicts Patient Outcomes.

Smith CL, Kilic O, Schiapparelli P, Guerrero-Cazares H, Kim DH, Sedora-Roman NI, Gupta S, O'Donnell T, Chaichana KL, Rodriguez FJ, Abbadi S, Park J, Quiñones-Hinojosa A, Levchenko A.

Cell Rep. 2016 Jun 21;15(12):2616-24. doi: 10.1016/j.celrep.2016.05.042. Epub 2016 Jun 9.


Role of spatial averaging in multicellular gradient sensing.

Smith T, Fancher S, Levchenko A, Nemenman I, Mugler A.

Phys Biol. 2016 May 20;13(3):035004. doi: 10.1088/1478-3975/13/3/035004.


Directed migration of cancer cells guided by the graded texture of the underlying matrix.

Park J, Kim DH, Kim HN, Wang CJ, Kwak MK, Hur E, Suh KY, An SS, Levchenko A.

Nat Mater. 2016 Jul;15(7):792-801. doi: 10.1038/nmat4586. Epub 2016 Mar 14.


Endothelial cells decode VEGF-mediated Ca2+ signaling patterns to produce distinct functional responses.

Noren DP, Chou WH, Lee SH, Qutub AA, Warmflash A, Wagner DS, Popel AS, Levchenko A.

Sci Signal. 2016 Feb 23;9(416):ra20. doi: 10.1126/scisignal.aad3188.


Nonlinear Generation of Vorticity by Surface Waves.

Filatov SV, Parfenyev VM, Vergeles SS, Brazhnikov MY, Levchenko AA, Lebedev VV.

Phys Rev Lett. 2016 Feb 5;116(5):054501. doi: 10.1103/PhysRevLett.116.054501. Epub 2016 Feb 5.


Precisely parameterized experimental and computational models of tissue organization.

Molitoris JM, Paliwal S, Sekar RB, Blake R, Park J, Trayanova NA, Tung L, Levchenko A.

Integr Biol (Camb). 2016 Feb;8(2):230-242. doi: 10.1039/c5ib00270b. Epub 2016 Jan 29.


Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis.

Ellison D, Mugler A, Brennan MD, Lee SH, Huebner RJ, Shamir ER, Woo LA, Kim J, Amar P, Nemenman I, Ewald AJ, Levchenko A.

Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):E679-88. doi: 10.1073/pnas.1516503113. Epub 2016 Jan 20.


Limits to the precision of gradient sensing with spatial communication and temporal integration.

Mugler A, Levchenko A, Nemenman I.

Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):E689-95. doi: 10.1073/pnas.1509597112. Epub 2016 Jan 20.


Helical Quantum Edge Gears in 2D Topological Insulators.

Chou YZ, Levchenko A, Foster MS.

Phys Rev Lett. 2015 Oct 30;115(18):186404. doi: 10.1103/PhysRevLett.115.186404. Epub 2015 Oct 29.


Real-time relationship between PKA biochemical signal network dynamics and increased action potential firing rate in heart pacemaker cells: Kinetics of PKA activation in heart pacemaker cells.

Yaniv Y, Ganesan A, Yang D, Ziman BD, Lyashkov AE, Levchenko A, Zhang J, Lakatta EG.

J Mol Cell Cardiol. 2015 Sep;86:168-78. doi: 10.1016/j.yjmcc.2015.07.024. Epub 2015 Aug 1.


Hypoxia-cultured human adipose-derived mesenchymal stem cells are non-oncogenic and have enhanced viability, motility, and tropism to brain cancer.

Feng Y, Zhu M, Dangelmajer S, Lee YM, Wijesekera O, Castellanos CX, Denduluri A, Chaichana KL, Li Q, Zhang H, Levchenko A, Guerrero-Cazares H, Quiñones-Hinojosa A.

Cell Death Dis. 2015 Jun 25;6:e1797. doi: 10.1038/cddis.2015.176. No abstract available.


Beta-catenin in schizophrenia: Possibly deleterious novel mutation.

Levchenko A, Davtian S, Freylichman O, Zagrivnaya M, Kostareva A, Malashichev Y.

Psychiatry Res. 2015 Aug 30;228(3):843-8. doi: 10.1016/j.psychres.2015.05.014. Epub 2015 May 19.


[The up-to-date methods of management of NSAIDs-induced injuries of small intestine].

Tkach SM, Balabantseva HP, Levchenko AR.

Lik Sprava. 2014 May-Jun;(5-6):38-47. Review. Ukrainian.


Spatial manipulation with microfluidics.

Lin B, Levchenko A.

Front Bioeng Biotechnol. 2015 Apr 8;3:39. doi: 10.3389/fbioe.2015.00039. eCollection 2015. Review.


Interplay between chemotaxis and contact inhibition of locomotion determines exploratory cell migration.

Lin B, Yin T, Wu YI, Inoue T, Levchenko A.

Nat Commun. 2015 Apr 8;6:6619. doi: 10.1038/ncomms7619.


Control of the interface between heterotypic cell populations reveals the mechanism of intercellular transfer of signaling proteins.

Kshitiz, Afzal J, Suhail Y, Ahn EH, Goyal R, Hubbi ME, Hussaini Q, Ellison DD, Goyal J, Nacev B, Kim DH, Lee JH, Frankel S, Gray K, Bankoti R, Chien AJ, Levchenko A.

Integr Biol (Camb). 2015 Mar;7(3):364-72.


Bidirectional energy cascade in surface capillary waves.

Abdurakhimov LV, Arefin M, Kolmakov GV, Levchenko AA, Lvov YV, Remizov IA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Feb;91(2):023021. Epub 2015 Feb 27.


Pre-exposure of human adipose mesenchymal stem cells to soluble factors enhances their homing to brain cancer.

Smith CL, Chaichana KL, Lee YM, Lin B, Stanko KM, O'Donnell T, Gupta S, Shah SR, Wang J, Wijesekera O, Delannoy M, Levchenko A, Quiñones-Hinojosa A.

Stem Cells Transl Med. 2015 Mar;4(3):239-51. doi: 10.5966/sctm.2014-0149. Epub 2015 Feb 2.


Fiber-optic magnetic-field imaging.

Fedotov IV, Doronina-Amitonova LV, Sidorov-Biryukov DA, Safronov NA, Blakley S, Levchenko AO, Zibrov SA, Fedotov AB, Kilin SY, Scully MO, Velichansky VL, Zheltikov AM.

Opt Lett. 2014 Dec 15;39(24):6954-7. doi: 10.1364/OL.39.006954.


Hypoxia-cultured human adipose-derived mesenchymal stem cells are non-oncogenic and have enhanced viability, motility, and tropism to brain cancer.

Feng Y, Zhu M, Dangelmajer S, Lee YM, Wijesekera O, Castellanos CX, Denduluri A, Chaichana KL, Li Q, Zhang H, Levchenko A, Guerrero-Cazares H, Quiñones-Hinojosa A.

Cell Death Dis. 2014 Dec 11;5:e1567. doi: 10.1038/cddis.2014.521. Erratum in: Cell Death Dis. 2015;6:e1797.


Fiber-optic magnetometry with randomly oriented spins.

Fedotov IV, Doronina-Amitonova LV, Sidorov-Biryukov DA, Safronov NA, Levchenko AO, Zibrov SA, Blakley S, Perez H, Akimov AV, Fedotov AB, Hemmer P, Sakoda K, Velichansky VL, Scully MO, Zheltikov AM.

Opt Lett. 2014 Dec 1;39(23):6755-8. doi: 10.1364/OL.39.006755.


Plasmon decay and thermal transport from spin-charge coupling in generic Luttinger liquids.

Levchenko A.

Phys Rev Lett. 2014 Nov 7;113(19):196401. Epub 2014 Nov 4.


Noise decomposition of intracellular biochemical signaling networks using nonequivalent reporters.

Rhee A, Cheong R, Levchenko A.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17330-5. doi: 10.1073/pnas.1411932111. Epub 2014 Nov 17.


Directed transfer of microwave radiation in sliding-mode plasma waveguides produced by ultraviolet laser in atmospheric air.

Zvorykin VD, Ionin AA, Levchenko AO, Seleznev LV, Sinitsyn DV, Smetanin IV, Ustinovskii NN, Shutov AV.

Appl Opt. 2014 Nov 1;53(31):I31-I40. doi: 10.1364/AO.53.000I31.


Hybrid mode-locked erbium-doped all-fiber soliton laser with a distributed polarizer.

Chernykh DS, Krylov AA, Levchenko AE, Grebenyukov VV, Arutunyan NR, Pozharov AS, Obraztsova ED, Dianov EM.

Appl Opt. 2014 Oct 10;53(29):6654-62. doi: 10.1364/AO.53.006654.


Human cerebrospinal fluid regulates proliferation and migration of stem cells through insulin-like growth factor-1.

Zhu M, Feng Y, Dangelmajer S, Guerrero-Cázares H, Chaichana KL, Smith CL, Levchenko A, Lei T, Quiñones-Hinojosa A.

Stem Cells Dev. 2015 Jan 15;24(2):160-71. doi: 10.1089/scd.2014.0076.


Electronic monitoring of individual healthcare workers' hand hygiene event rate.

Muller MP, Levchenko AI, Ing S, Pong SM, Fernie GR.

Infect Control Hosp Epidemiol. 2014 Sep;35(9):1189-92. doi: 10.1086/677631. Epub 2014 Jul 29. No abstract available.


PHD3-mediated prolyl hydroxylation of nonmuscle actin impairs polymerization and cell motility.

Luo W, Lin B, Wang Y, Zhong J, O'Meally R, Cole RN, Pandey A, Levchenko A, Semenza GL.

Mol Biol Cell. 2014 Sep 15;25(18):2788-96. doi: 10.1091/mbc.E14-02-0775. Epub 2014 Jul 30.


Electron spin manipulation and readout through an optical fiber.

Fedotov IV, Doronina-Amitonova LV, Voronin AA, Levchenko AO, Zibrov SA, Sidorov-Biryukov DA, Fedotov AB, Velichansky VL, Zheltikov AM.

Sci Rep. 2014 Jul 16;4:5362. doi: 10.1038/srep05362.


Glucose-6-phosphatase is a key metabolic regulator of glioblastoma invasion.

Abbadi S, Rodarte JJ, Abutaleb A, Lavell E, Smith CL, Ruff W, Schiller J, Olivi A, Levchenko A, Guerrero-Cazares H, Quinones-Hinojosa A.

Mol Cancer Res. 2014 Nov;12(11):1547-59. doi: 10.1158/1541-7786.MCR-14-0106-T. Epub 2014 Jul 7.


Cellular noise and information transmission.

Levchenko A, Nemenman I.

Curr Opin Biotechnol. 2014 Aug;28:156-64. doi: 10.1016/j.copbio.2014.05.002. Epub 2014 Jun 9. Review.


Automated monitoring: a potential solution for achieving sustainable improvement in hand hygiene practices.

Levchenko AI, Boscart VM, Fernie GR.

Comput Inform Nurs. 2014 Aug;32(8):397-403. doi: 10.1097/CIN.0000000000000067.


Mesenchymal stem cells from human fat engineered to secrete BMP4 are nononcogenic, suppress brain cancer, and prolong survival.

Li Q, Wijesekera O, Salas SJ, Wang JY, Zhu M, Aprhys C, Chaichana KL, Chesler DA, Zhang H, Smith CL, Guerrero-Cazares H, Levchenko A, Quinones-Hinojosa A.

Clin Cancer Res. 2014 May 1;20(9):2375-87. doi: 10.1158/1078-0432.CCR-13-1415.


Concise review: Mechanotransduction via p190RhoGAP regulates a switch between cardiomyogenic and endothelial lineages in adult cardiac progenitors.

Kshitiz, Afzal J, Kim DH, Levchenko A.

Stem Cells. 2014 Aug;32(8):1999-2007. doi: 10.1002/stem.1700. Review.

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