Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 34

1.

RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit.

Milligan L, Sayou C, Tuck A, Auchynnikava T, Reid JE, Alexander R, Alves FL, Allshire R, Spanos C, Rappsilber J, Beggs JD, Kudla G, Tollervey D.

Elife. 2017 Oct 13;6. pii: e27082. doi: 10.7554/eLife.27082.

2.

N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3'-end processing.

Bartosovic M, Molares HC, Gregorova P, Hrossova D, Kudla G, Vanacova S.

Nucleic Acids Res. 2017 Nov 2;45(19):11356-11370. doi: 10.1093/nar/gkx778.

3.

Mutually Exclusive CBC-Containing Complexes Contribute to RNA Fate.

Giacometti S, Benbahouche NEH, Domanski M, Robert MC, Meola N, Lubas M, Bukenborg J, Andersen JS, Schulze WM, Verheggen C, Kudla G, Jensen TH, Bertrand E.

Cell Rep. 2017 Mar 14;18(11):2635-2650. doi: 10.1016/j.celrep.2017.02.046.

4.

Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E.

Waters SA, McAteer SP, Kudla G, Pang I, Deshpande NP, Amos TG, Leong KW, Wilkins MR, Strugnell R, Gally DL, Tollervey D, Tree JJ.

EMBO J. 2017 Feb 1;36(3):374-387. doi: 10.15252/embj.201694639. Epub 2016 Nov 11.

5.

Maf1-mediated regulation of yeast RNA polymerase III is correlated with CCA addition at the 3' end of tRNA precursors.

Foretek D, Nuc P, Żywicki M, Karlowski WM, Kudla G, Boguta M.

Gene. 2017 May 15;612:12-18. doi: 10.1016/j.gene.2016.08.033. Epub 2016 Aug 27.

6.

Codon optimization of antigen coding sequences improves the immune potential of DNA vaccines against avian influenza virus H5N1 in mice and chickens.

Stachyra A, Redkiewicz P, Kosson P, Protasiuk A, Góra-Sochacka A, Kudla G, Sirko A.

Virol J. 2016 Aug 26;13(1):143. doi: 10.1186/s12985-016-0599-y.

7.

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.

Wells GR, Weichmann F, Colvin D, Sloan KE, Kudla G, Tollervey D, Watkins NJ, Schneider C.

Nucleic Acids Res. 2016 Oct 14;44(18):9016. Epub 2016 Jul 14. No abstract available.

8.

Strand-specific, high-resolution mapping of modified RNA polymerase II.

Milligan L, Huynh-Thu VA, Delan-Forino C, Tuck A, Petfalski E, Lombraña R, Sanguinetti G, Kudla G, Tollervey D.

Mol Syst Biol. 2016 Jun 10;12(6):874. doi: 10.15252/msb.20166869.

9.

Network of epistatic interactions within a yeast snoRNA.

Puchta O, Cseke B, Czaja H, Tollervey D, Sanguinetti G, Kudla G.

Science. 2016 May 13;352(6287):840-4. doi: 10.1126/science.aaf0965. Epub 2016 Apr 14. Erratum in: Science. 2016 May 6;352(6286). pii: aaf9112. doi: 10.1126/science.aaf9112.

10.

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.

Wells GR, Weichmann F, Colvin D, Sloan KE, Kudla G, Tollervey D, Watkins NJ, Schneider C.

Nucleic Acids Res. 2016 Jun 20;44(11):5399-409. doi: 10.1093/nar/gkw213. Epub 2016 Mar 31. Erratum in: Nucleic Acids Res. 2016 Oct 14;44(18):9016.

11.

Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough.

Holmes RK, Tuck AC, Zhu C, Dunn-Davies HR, Kudla G, Clauder-Munster S, Granneman S, Steinmetz LM, Guthrie C, Tollervey D.

PLoS Genet. 2015 Dec 22;11(12):e1005735. doi: 10.1371/journal.pgen.1005735. eCollection 2015 Dec.

12.

The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis.

Lubas M, Andersen PR, Schein A, Dziembowski A, Kudla G, Jensen TH.

Cell Rep. 2015 Jan 13;10(2):178-92. doi: 10.1016/j.celrep.2014.12.026. Epub 2015 Jan 8.

13.

Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery.

Leung E, Schneider C, Yan F, Mohi-El-Din H, Kudla G, Tuck A, Wlotzka W, Doronina VA, Bartley R, Watkins NJ, Tollervey D, Brown JD.

Nucleic Acids Res. 2014;42(16):10698-710. doi: 10.1093/nar/gku761. Epub 2014 Aug 26.

14.

A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase.

Martin R, Hackert P, Ruprecht M, Simm S, Brüning L, Mirus O, Sloan KE, Kudla G, Schleiff E, Bohnsack MT.

RNA. 2014 Aug;20(8):1173-82. doi: 10.1261/rna.044669.114. Epub 2014 Jun 19.

15.

Evidence for the biogenesis of more than 1,000 novel human microRNAs.

Friedländer MR, Lizano E, Houben AJ, Bezdan D, Báñez-Coronel M, Kudla G, Mateu-Huertas E, Kagerbauer B, González J, Chen KC, LeProust EM, Martí E, Estivill X.

Genome Biol. 2014 Apr 7;15(4):R57. doi: 10.1186/gb-2014-15-4-r57.

16.

PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast.

Webb S, Hector RD, Kudla G, Granneman S.

Genome Biol. 2014 Jan 7;15(1):R8. doi: 10.1186/gb-2014-15-1-r8.

17.

Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data.

Travis AJ, Moody J, Helwak A, Tollervey D, Kudla G.

Methods. 2014 Feb;65(3):263-73. doi: 10.1016/j.ymeth.2013.10.015. Epub 2013 Nov 6.

18.

Rate-limiting steps in yeast protein translation.

Shah P, Ding Y, Niemczyk M, Kudla G, Plotkin JB.

Cell. 2013 Jun 20;153(7):1589-601. doi: 10.1016/j.cell.2013.05.049.

19.

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.

Helwak A, Kudla G, Dudnakova T, Tollervey D.

Cell. 2013 Apr 25;153(3):654-65. doi: 10.1016/j.cell.2013.03.043.

20.

Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning.

Hahn D, Kudla G, Tollervey D, Beggs JD.

Genes Dev. 2012 Nov 1;26(21):2408-21. doi: 10.1101/gad.199307.112.

21.

Transcriptome-wide analysis of exosome targets.

Schneider C, Kudla G, Wlotzka W, Tuck A, Tollervey D.

Mol Cell. 2012 Nov 9;48(3):422-33. doi: 10.1016/j.molcel.2012.08.013. Epub 2012 Sep 20.

22.

Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target.

Libri V, Helwak A, Miesen P, Santhakumar D, Borger JG, Kudla G, Grey F, Tollervey D, Buck AH.

Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):279-84. doi: 10.1073/pnas.1114204109. Epub 2011 Dec 19.

23.

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast.

Kudla G, Granneman S, Hahn D, Beggs JD, Tollervey D.

Proc Natl Acad Sci U S A. 2011 Jun 14;108(24):10010-5. doi: 10.1073/pnas.1017386108. Epub 2011 May 24.

24.

Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing.

van Nues RW, Granneman S, Kudla G, Sloan KE, Chicken M, Tollervey D, Watkins NJ.

EMBO J. 2011 May 10;30(12):2420-30. doi: 10.1038/emboj.2011.148.

25.

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts.

Wlotzka W, Kudla G, Granneman S, Tollervey D.

EMBO J. 2011 May 4;30(9):1790-803. doi: 10.1038/emboj.2011.97. Epub 2011 Apr 1. Erratum in: EMBO J. 2011;30(14):2982.

26.

Synonymous but not the same: the causes and consequences of codon bias.

Plotkin JB, Kudla G.

Nat Rev Genet. 2011 Jan;12(1):32-42. doi: 10.1038/nrg2899. Epub 2010 Nov 23. Review.

27.

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs.

Granneman S, Kudla G, Petfalski E, Tollervey D.

Proc Natl Acad Sci U S A. 2009 Jun 16;106(24):9613-8. doi: 10.1073/pnas.0901997106. Epub 2009 May 29.

28.

Coding-sequence determinants of gene expression in Escherichia coli.

Kudla G, Murray AW, Tollervey D, Plotkin JB.

Science. 2009 Apr 10;324(5924):255-8. doi: 10.1126/science.1170160.

29.

Genome landscapes and bacteriophage codon usage.

Lucks JB, Nelson DR, Kudla GR, Plotkin JB.

PLoS Comput Biol. 2008 Feb 29;4(2):e1000001. doi: 10.1371/journal.pcbi.1000001.

30.

High guanine and cytosine content increases mRNA levels in mammalian cells.

Kudla G, Lipinski L, Caffin F, Helwak A, Zylicz M.

PLoS Biol. 2006 Jun;4(6):e180. Epub 2006 May 23.

31.

Hsp90 chaperones wild-type p53 tumor suppressor protein.

Walerych D, Kudla G, Gutkowska M, Wawrzynow B, Muller L, King FW, Helwak A, Boros J, Zylicz A, Zylicz M.

J Biol Chem. 2004 Nov 19;279(47):48836-45. Epub 2004 Sep 9.

32.

Gene conversion and GC-content evolution in mammalian Hsp70.

Kudla G, Helwak A, Lipinski L.

Mol Biol Evol. 2004 Jul;21(7):1438-44. Epub 2004 Apr 14.

PMID:
15084682
33.

Inducible heat shock protein 70 promotes myelin autoantigen presentation by the HLA class II.

Mycko MP, Cwiklinska H, Szymanski J, Szymanska B, Kudla G, Kilianek L, Odyniec A, Brosnan CF, Selmaj KW.

J Immunol. 2004 Jan 1;172(1):202-13.

34.

The destabilization of lipid membranes induced by the C-terminal fragment of caspase 8-cleaved bid is inhibited by the N-terminal fragment.

Kudla G, Montessuit S, Eskes R, Berrier C, Martinou JC, Ghazi A, Antonsson B.

J Biol Chem. 2000 Jul 28;275(30):22713-8.

Supplemental Content

Support Center