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Age, sex, and TNF associated differences in the gut microbiota of mice and their impact on acute TNBS colitis.

Kozik AJ, Nakatsu CH, Chun H, Jones-Hall YL.

Exp Mol Pathol. 2017 Dec;103(3):311-319. doi: 10.1016/j.yexmp.2017.11.014. Epub 2017 Nov 22.


Extracellular proteinases of Candida species pathogenic yeasts.

Rapala-Kozik M, Bochenska O, Zajac D, Karkowska-Kuleta J, Gogol M, Zawrotniak M, Kozik A.

Mol Oral Microbiol. 2018 Apr;33(2):113-124. doi: 10.1111/omi.12206. Epub 2018 Jan 19. Review.


Aspartic Proteases and Major Cell Wall Components in Candida albicans Trigger the Release of Neutrophil Extracellular Traps.

Zawrotniak M, Bochenska O, Karkowska-Kuleta J, Seweryn-Ozog K, Aoki W, Ueda M, Kozik A, Rapala-Kozik M.

Front Cell Infect Microbiol. 2017 Sep 21;7:414. doi: 10.3389/fcimb.2017.00414. eCollection 2017.


Bradykinin B2 and dopamine D2 receptors form a functional dimer.

Niewiarowska-Sendo A, Polit A, Piwowar M, Tworzydło M, Kozik A, Guevara-Lora I.

Biochim Biophys Acta. 2017 Oct;1864(10):1855-1866. doi: 10.1016/j.bbamcr.2017.07.012. Epub 2017 Jul 27.


Binding of human plasminogen and high-molecular-mass kininogen by cell surface-exposed proteins of Candida parapsilosis.

Karkowska-Kuleta J, Zajac D, Bras G, Bochenska O, Rapala-Kozik M, Kozik A.

Acta Biochim Pol. 2017;64(3):391-400. doi: 10.18388/abp.2017_1609. Epub 2017 Jun 24.


Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.

Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO, Truco MJ, Xia R, Zhu S, Xu C, Xu H, Xu X, Cox K, Korf I, Meyers BC, Michelmore RW.

Nat Commun. 2017 Apr 12;8:14953. doi: 10.1038/ncomms14953.


Kinin Peptides Enhance Inflammatory and Oxidative Responses Promoting Apoptosis in a Parkinson's Disease Cellular Model.

Niewiarowska-Sendo A, Kozik A, Guevara-Lora I.

Mediators Inflamm. 2016;2016:4567343. Epub 2016 Sep 18.


Hypothetical orchestrated cooperation between dopaminergic and kinin receptors for the regulation of common functions.

Guevara-Lora I, Niewiarowska-Sendo A, Polit A, Kozik A.

Acta Biochim Pol. 2016;63(3):387-96. doi: 10.18388/abp.2016_1366. Epub 2016 Aug 2. Review.


Characterization of the interactions between human high-molecular-mass kininogen and cell wall proteins of pathogenic yeasts Candida tropicalis.

Karkowska-Kuleta J, Zajac D, Bras G, Bochenska O, Seweryn K, Kedracka-Krok S, Jankowska U, Rapala-Kozik M, Kozik A.

Acta Biochim Pol. 2016;63(3):427-36. doi: 10.18388/abp.2016_1353. Epub 2016 Jul 30.


Interaction of human fibronectin with Candida glabrata epithelial adhesin 6 (Epa6).

Zajac D, Karkowska-Kuleta J, Bochenska O, Rapala-Kozik M, Kozik A.

Acta Biochim Pol. 2016;63(3):417-26. doi: 10.18388/abp.2016_1328. Epub 2016 Jul 30.


Vitamins B1, B2, B3 and B9 - Occurrence, Biosynthesis Pathways and Functions in Human Nutrition.

Wolak N, Zawrotniak M, Gogol M, Kozik A, Rapala-Kozik M.

Mini Rev Med Chem. 2017;17(12):1075-1111. doi: 10.2174/1389557516666160725095729. Review.


The action of ten secreted aspartic proteases of pathogenic yeast Candida albicans on major human salivary antimicrobial peptide, histatin 5.

Bochenska O, Rapala-Kozik M, Wolak N, Aoki W, Ueda M, Kozik A.

Acta Biochim Pol. 2016;63(3):403-10. doi: 10.18388/abp.2016_1318. Epub 2016 Jul 8.


Gingipains of Porphyromonas gingivalis Affect the Stability and Function of Serine Protease Inhibitor of Kazal-type 6 (SPINK6), a Tissue Inhibitor of Human Kallikreins.

Plaza K, Kalinska M, Bochenska O, Meyer-Hoffert U, Wu Z, Fischer J, Falkowski K, Sasiadek L, Bielecka E, Potempa B, Kozik A, Potempa J, Kantyka T.

J Biol Chem. 2016 Sep 2;291(36):18753-64. doi: 10.1074/jbc.M116.722942. Epub 2016 Jun 27.


The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.

Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P.

Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22.


Inactivation of α1-proteinase inhibitor by Candida albicans aspartic proteases favors the epithelial and endothelial cell colonization in the presence of neutrophil extracellular traps.

Gogol M, Ostrowska D, Klaga K, Bochenska O, Wolak N, Aoki W, Ueda M, Kozik A, Rapala-Kozik M.

Acta Biochim Pol. 2016;63(1):167-175. doi: 10.18388/abp.2015_1163. Epub 2015 Dec 7.


Kinetic and thermodynamic characterization of the interactions between the components of human plasma kinin-forming system and isolated and purified cell wall proteins of Candida albicans.

Seweryn K, Karkowska-Kuleta J, Wolak N, Bochenska O, Kedracka-Krok S, Kozik A, Rapala-Kozik M.

Acta Biochim Pol. 2015;62(4):825-35. doi: 10.18388/abp.2015_1142. Epub 2015 Dec 4.


Surfaceome of pathogenic yeasts, Candida parapsilosis and Candida tropicalis, revealed with the use of cell surface shaving method and shotgun proteomic approach.

Karkowska-Kuleta J, Zajac D, Bochenska O, Kozik A.

Acta Biochim Pol. 2015;62(4):807-19. doi: 10.18388/abp.2015_1140. Epub 2015 Dec 4.


Charge Stabilized Silver Nanoparticles Applied as Antibacterial Agents.

Kujda M, Oćwieja M, Adamczyk Z, Bocheńska O, Braś G, Kozik A, Bielańska E, Barbasz J.

J Nanosci Nanotechnol. 2015 May;15(5):3574-83.


Genome-Wide Architecture of Disease Resistance Genes in Lettuce.

Christopoulou M, Wo SR, Kozik A, McHale LK, Truco MJ, Wroblewski T, Michelmore RW.

G3 (Bethesda). 2015 Oct 8;5(12):2655-69. doi: 10.1534/g3.115.020818. Erratum in: G3 (Bethesda). 2016 Mar;6(3):773.


Fibronectin-, vitronectin- and laminin-binding proteins at the cell walls of Candida parapsilosis and Candida tropicalis pathogenic yeasts.

Kozik A, Karkowska-Kuleta J, Zajac D, Bochenska O, Kedracka-Krok S, Jankowska U, Rapala-Kozik M.

BMC Microbiol. 2015 Oct 5;15:197. doi: 10.1186/s12866-015-0531-4.


Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species.

Hill T, Ashrafi H, Chin-Wo SR, Stoffel K, Truco MJ, Kozik A, Michelmore R, Van Deynze A.

G3 (Bethesda). 2015 Sep 8;5(11):2341-55. doi: 10.1534/g3.115.020040.


Inactivation of human kininogen-derived antimicrobial peptides by secreted aspartic proteases produced by the pathogenic yeast Candida albicans.

Bochenska O, Rapala-Kozik M, Wolak N, Kamysz W, Grzywacz D, Aoki W, Ueda M, Kozik A.

Biol Chem. 2015 Dec;396(12):1369-75. doi: 10.1515/hsz-2015-0167.


Selected mucolytic, anti-inflammatory and cardiovascular drugs change the ability of neutrophils to form extracellular traps (NETs).

Zawrotniak M, Kozik A, Rapala-Kozik M.

Acta Biochim Pol. 2015;62(3):465-73. doi: 10.18388/abp.2015_1055. Epub 2015 Aug 20.


Characterization of thiamine uptake and utilization in Candida spp. subjected to oxidative stress.

Wolak N, Tomasi M, Kozik A, Rapala-Kozik M.

Acta Biochim Pol. 2015;62(3):445-55. doi: 10.18388/abp.2015_1044. Epub 2015 Aug 18.


The effect of differentiation agents on inflammatory and oxidative responses of the human neuroblastoma cell line SK-N-SH.

Niewiarowska-Sendo A, Patrzalek K, Kozik A, Guevara-Lora I.

Acta Biochim Pol. 2015;62(3):435-43. doi: 10.18388/abp.2015_1039. Epub 2015 Aug 18.


Cell wall proteome of pathogenic fungi.

Karkowska-Kuleta J, Kozik A.

Acta Biochim Pol. 2015;62(3):339-51. doi: 10.18388/abp.2015_1032. Epub 2015 Jul 21. Review.


Kinin release from human kininogen by 10 aspartic proteases produced by pathogenic yeast Candida albicans.

Kozik A, Gogol M, Bochenska O, Karkowska-Kuleta J, Wolak N, Kamysz W, Aoki W, Ueda M, Faussner A, Rapala-Kozik M.

BMC Microbiol. 2015 Mar 4;15:60. doi: 10.1186/s12866-015-0394-8.


Correction: Ablation of tumor necrosis factor is associated with decreased inflammation and alterations of the microbiota in a mouse model of inflammatory bowel disease.

Jones-Hall YL, Kozik A, Nakatsu C.

PLoS One. 2015 Apr 10;10(4):e0125309. doi: 10.1371/journal.pone.0125309. eCollection 2015. No abstract available.


Inactivation of the antifungal and immunomodulatory properties of human cathelicidin LL-37 by aspartic proteases produced by the pathogenic yeast Candida albicans.

Rapala-Kozik M, Bochenska O, Zawrotniak M, Wolak N, Trebacz G, Gogol M, Ostrowska D, Aoki W, Ueda M, Kozik A.

Infect Immun. 2015 Jun;83(6):2518-30. doi: 10.1128/IAI.00023-15. Epub 2015 Apr 6.


Ablation of tumor necrosis factor is associated with decreased inflammation and alterations of the microbiota in a mouse model of inflammatory bowel disease.

Jones-Hall YL, Kozik A, Nakatsu C.

PLoS One. 2015 Mar 16;10(3):e0119441. doi: 10.1371/journal.pone.0119441. eCollection 2015. Erratum in: PLoS One. 2015;10(4):e0125309.


Dissection of Two Complex Clusters of Resistance Genes in Lettuce (Lactuca sativa).

Christopoulou M, McHale LK, Kozik A, Reyes-Chin Wo S, Wroblewski T, Michelmore RW.

Mol Plant Microbe Interact. 2015 Jul;28(7):751-65. doi: 10.1094/MPMI-06-14-0175-R. Epub 2015 Jul 9.


Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis.

Wroblewski T, Matvienko M, Piskurewicz U, Xu H, Martineau B, Wong J, Govindarajulu M, Kozik A, Michelmore RW.

RNA. 2014 Dec;20(12):1987-99. doi: 10.1261/rna.046532.114. Epub 2014 Oct 24.


A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.

Mandel JR, Dikow RB, Funk VA, Masalia RR, Staton SE, Kozik A, Michelmore RW, Rieseberg LH, Burke JM.

Appl Plant Sci. 2014 Feb 6;2(2). pii: apps.1300085. doi: 10.3732/apps.1300085. eCollection 2014 Feb.


Moonlighting proteins as virulence factors of pathogenic fungi, parasitic protozoa and multicellular parasites.

Karkowska-Kuleta J, Kozik A.

Mol Oral Microbiol. 2014 Dec;29(6):270-83. doi: 10.1111/omi.12078. Epub 2014 Sep 19. Review.


Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives.

Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.

Mol Ecol Resour. 2014 Jan;14(1):166-77. doi: 10.1111/1755-0998.12163. Epub 2013 Sep 18.


Release of biologically active kinin peptides, Met-Lys-bradykinin and Leu-Met-Lys-bradykinin from human kininogens by two major secreted aspartic proteases of Candida parapsilosis.

Bras G, Bochenska O, Rapala-Kozik M, Guevara-Lora I, Faussner A, Kamysz W, Kozik A.

Peptides. 2013 Oct;48:114-23. doi: 10.1016/j.peptides.2013.08.003. Epub 2013 Aug 13.


Secreted aspartic peptidases of Candida albicans liberate bactericidal hemocidins from human hemoglobin.

Bocheńska O, Rąpała-Kozik M, Wolak N, Braś G, Kozik A, Dubin A, Aoki W, Ueda M, Mak P.

Peptides. 2013 Oct;48:49-58. doi: 10.1016/j.peptides.2013.07.023. Epub 2013 Aug 6.


Kinin-generating cellular model obtained from human glioblastoma cell line U-373.

Guevara-Lora I, Blonska B, Faussner A, Kozik A.

Acta Biochim Pol. 2013;60(3):299-305. Epub 2013 Jun 12.


Phosphates (V) recovery from phosphorus mineral fertilizers industry wastewater by continuous struvite reaction crystallization process.

Hutnik N, Kozik A, Mazienczuk A, Piotrowski K, Wierzbowska B, Matynia A.

Water Res. 2013 Jul 1;47(11):3635-43. doi: 10.1016/j.watres.2013.04.026. Epub 2013 Apr 24.


Determinate primary root growth as an adaptation to aridity in Cactaceae: towards an understanding of the evolution and genetic control of the trait.

Shishkova S, Las Peñas ML, Napsucialy-Mendivil S, Matvienko M, Kozik A, Montiel J, Patiño A, Dubrovsky JG.

Ann Bot. 2013 Jul;112(2):239-52. doi: 10.1093/aob/mct100. Epub 2013 May 10.


An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce.

Truco MJ, Ashrafi H, Kozik A, van Leeuwen H, Bowers J, Wo SR, Stoffel K, Xu H, Hill T, Van Deynze A, Michelmore RW.

G3 (Bethesda). 2013 Apr 9;3(4):617-631. doi: 10.1534/g3.112.004929.


Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip.

Hill TA, Ashrafi H, Reyes-Chin-Wo S, Yao J, Stoffel K, Truco MJ, Kozik A, Michelmore RW, Van Deynze A.

PLoS One. 2013;8(2):e56200. doi: 10.1371/journal.pone.0056200. Epub 2013 Feb 8.


Consequences of normalizing transcriptomic and genomic libraries of plant genomes using a duplex-specific nuclease and tetramethylammonium chloride.

Matvienko M, Kozik A, Froenicke L, Lavelle D, Martineau B, Perroud B, Michelmore R.

PLoS One. 2013;8(2):e55913. doi: 10.1371/journal.pone.0055913. Epub 2013 Feb 8.


De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.

Ashrafi H, Hill T, Stoffel K, Kozik A, Yao J, Chin-Wo SR, Van Deynze A.

BMC Genomics. 2012 Oct 30;13:571. doi: 10.1186/1471-2164-13-571.


Extracellular aspartic protease SAP2 of Candida albicans yeast cleaves human kininogens and releases proinflammatory peptides, Met-Lys-bradykinin and des-Arg(9)-Met-Lys-bradykinin.

Bras G, Bochenska O, Rapala-Kozik M, Guevara-Lora I, Faussner A, Kozik A.

Biol Chem. 2012 Aug;393(8):829-39. doi: 10.1515/hsz-2012-0157.


An investigation of the affinities, specificity and kinetics involved in the interaction between the Yin Yang 1 transcription factor and DNA.

Golebiowski FM, Górecki A, Bonarek P, Rapala-Kozik M, Kozik A, Dziedzicka-Wasylewska M.

FEBS J. 2012 Sep;279(17):3147-58. doi: 10.1111/j.1742-4658.2012.08693.x. Epub 2012 Jul 25.


Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.).

Stoffel K, van Leeuwen H, Kozik A, Caldwell D, Ashrafi H, Cui X, Tan X, Hill T, Reyes-Chin-Wo S, Truco MJ, Michelmore RW, Van Deynze A.

BMC Genomics. 2012 May 14;13:185. doi: 10.1186/1471-2164-13-185.


Altered expression and activities of enzymes involved in thiamine diphosphate biosynthesis in Saccharomyces cerevisiae under oxidative and osmotic stress.

Kowalska E, Kujda M, Wolak N, Kozik A.

FEMS Yeast Res. 2012 Aug;12(5):534-46. doi: 10.1111/j.1567-1364.2012.00804.x. Epub 2012 Apr 23.


Molecular determinants of the interaction between human high molecular weight kininogen and Candida albicans cell wall: Identification of kininogen-binding proteins on fungal cell wall and mapping the cell wall-binding regions on kininogen molecule.

Karkowska-Kuleta J, Kedracka-Krok S, Rapala-Kozik M, Kamysz W, Bielinska S, Karafova A, Kozik A.

Peptides. 2011 Dec;32(12):2488-96. doi: 10.1016/j.peptides.2011.10.021. Epub 2011 Oct 28.


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