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Items: 15


A geographically-diverse collection of 418 human gut microbiome pathway genome databases.

Hahn AS, Altman T, Konwar KM, Hanson NW, Kim D, Relman DA, Dill DL, Hallam SJ.

Sci Data. 2017 Apr 11;4:170035. doi: 10.1038/sdata.2017.35.


LCA*: an entropy-based measure for taxonomic assignment within assembled metagenomes.

Hanson NW, Konwar KM, Hallam SJ.

Bioinformatics. 2016 Dec 1;32(23):3535-3542. Epub 2016 Aug 11.


The information science of microbial ecology.

Hahn AS, Konwar KM, Louca S, Hanson NW, Hallam SJ.

Curr Opin Microbiol. 2016 Jun;31:209-216. doi: 10.1016/j.mib.2016.04.014. Epub 2016 May 13. Review.


MetaPathways v2.5: quantitative functional, taxonomic and usability improvements.

Konwar KM, Hanson NW, Bhatia MP, Kim D, Wu SJ, Hahn AS, Morgan-Lang C, Cheung HK, Hallam SJ.

Bioinformatics. 2015 Oct 15;31(20):3345-7. doi: 10.1093/bioinformatics/btv361. Epub 2015 Jun 15.


Illuminating microbial dark matter in meromictic Sakinaw Lake.

Gies EA, Konwar KM, Beatty JT, Hallam SJ.

Appl Environ Microbiol. 2014 Nov;80(21):6807-18. doi: 10.1128/AEM.01774-14. Epub 2014 Aug 29.


Metabolic pathways for the whole community.

Hanson NW, Konwar KM, Hawley AK, Altman T, Karp PD, Hallam SJ.

BMC Genomics. 2014 Jul 22;15:619. doi: 10.1186/1471-2164-15-619.


Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle.

Wright JJ, Mewis K, Hanson NW, Konwar KM, Maas KR, Hallam SJ.

ISME J. 2014 Feb;8(2):455-68. doi: 10.1038/ismej.2013.152. Epub 2013 Sep 12.


Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common.

An D, Caffrey SM, Soh J, Agrawal A, Brown D, Budwill K, Dong X, Dunfield PF, Foght J, Gieg LM, Hallam SJ, Hanson NW, He Z, Jack TR, Klassen J, Konwar KM, Kuatsjah E, Li C, Larter S, Leopatra V, Nesbø CL, Oldenburg T, Pagé AP, Ramos-Padron E, Rochman FF, Saidi-Mehrabad A, Sensen CW, Sipahimalani P, Song YC, Wilson S, Wolbring G, Wong ML, Voordouw G.

Environ Sci Technol. 2013 Sep 17;47(18):10708-17. doi: 10.1021/es4020184. Epub 2013 Aug 26.


MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information.

Konwar KM, Hanson NW, Pagé AP, Hallam SJ.

BMC Bioinformatics. 2013 Jun 21;14:202. doi: 10.1186/1471-2105-14-202.


Expanding the boundaries of local similarity analysis.

Durno WE, Hanson NW, Konwar KM, Hallam SJ.

BMC Genomics. 2013;14 Suppl 1:S3. doi: 10.1186/1471-2164-14-S1-S3. Epub 2013 Jan 21.


Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean.

Allers E, Wright JJ, Konwar KM, Howes CG, Beneze E, Hallam SJ, Sullivan MB.

ISME J. 2013 Feb;7(2):256-68. doi: 10.1038/ismej.2012.108. Epub 2012 Nov 15.


Microbial ecology of expanding oxygen minimum zones.

Wright JJ, Konwar KM, Hallam SJ.

Nat Rev Microbiol. 2012 May 14;10(6):381-94. doi: 10.1038/nrmicro2778. Review.


A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities.

Leung K, Zahn H, Leaver T, Konwar KM, Hanson NW, Pagé AP, Lo CC, Chain PS, Hallam SJ, Hansen CL.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):7665-70. doi: 10.1073/pnas.1106752109. Epub 2012 Apr 30.


Highly scalable algorithms for robust string barcoding.

Dasgupta B, Konwar KM, Mandoiu II, Shvartsman AA.

Int J Bioinform Res Appl. 2005;1(2):145-61.


DNA-BAR: distinguisher selection for DNA barcoding.

DasGupta B, Konwar KM, Mandoiu II, Shvartsman AA.

Bioinformatics. 2005 Aug 15;21(16):3424-6. Epub 2005 Jun 16.


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