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Items: 1 to 50 of 2368

1.

Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas.

Lapek JD Jr, Mills RH, Wozniak JM, Campeau A, Fang RH, Wei X, van de Groep K, Perez-Lopez A, van Sorge NM, Raffatellu M, Knight R, Zhang L, Gonzalez DJ.

Cell Syst. 2018 Apr 28. pii: S2405-4712(18)30150-9. doi: 10.1016/j.cels.2018.04.010. [Epub ahead of print]

PMID:
29778837
2.

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.

Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Gregory Caporaso J.

Microbiome. 2018 May 17;6(1):90. doi: 10.1186/s40168-018-0470-z.

3.

The gut-liver axis and the intersection with the microbiome.

Tripathi A, Debelius J, Brenner DA, Karin M, Loomba R, Schnabl B, Knight R.

Nat Rev Gastroenterol Hepatol. 2018 May 10. doi: 10.1038/s41575-018-0011-z. [Epub ahead of print] Review.

PMID:
29748586
4.

A Systematic Review and Meta-Analysis of the Effectiveness of Acetylcholinesterase Inhibitors and Memantine in Treating the Cognitive Symptoms of Dementia.

Knight R, Khondoker M, Magill N, Stewart R, Landau S.

Dement Geriatr Cogn Disord. 2018 May 7;45(3-4):131-151. doi: 10.1159/000486546. [Epub ahead of print]

5.

Gut microbiota utilize immunoglobulin A for mucosal colonization.

Donaldson GP, Ladinsky MS, Yu KB, Sanders JG, Yoo BB, Chou WC, Conner ME, Earl AM, Knight R, Bjorkman PJ, Mazmanian SK.

Science. 2018 May 18;360(6390):795-800. doi: 10.1126/science.aaq0926. Epub 2018 May 3.

PMID:
29724905
6.

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

Janssen S, McDonald D, Gonzalez A, Navas-Molina JA, Jiang L, Xu ZZ, Winker K, Kado DM, Orwoll E, Manary M, Mirarab S, Knight R.

mSystems. 2018 Apr 17;3(3). pii: e00021-18. doi: 10.1128/mSystems.00021-18. eCollection 2018 May-Jun.

7.

Exposure to toxic metals triggers unique responses from the rat gut microbiota.

Richardson JB, Dancy BCR, Horton CL, Lee YS, Madejczyk MS, Xu ZZ, Ackermann G, Humphrey G, Palacios G, Knight R, Lewis JA.

Sci Rep. 2018 Apr 26;8(1):6578. doi: 10.1038/s41598-018-24931-w.

8.

Conversion from tacrolimus-mycophenolate mofetil to tacrolimus-mTOR immunosuppression after kidney-pancreas transplantation reduces the incidence of both BK and CMV viremia.

Knight RJ, Graviss EA, Nguyen DT, Kuten SA, Patel SJ, Gaber L, Gaber AO.

Clin Transplant. 2018 Apr 19:e13265. doi: 10.1111/ctr.13265. [Epub ahead of print]

PMID:
29676018
9.

Hopanoid-producing bacteria in the Red Sea include the major marine nitrite-oxidizers.

Kharbush JJ, Thompson LR, Haroon MF, Knight R, Aluwihare LI.

FEMS Microbiol Ecol. 2018 Apr 12. doi: 10.1093/femsec/fiy063. [Epub ahead of print]

PMID:
29668882
10.

Rapid amplification of prions from variant Creutzfeldt-Jakob disease cerebrospinal fluid.

Barria MA, Lee A, Green AJ, Knight R, Head MW.

J Pathol Clin Res. 2018 Apr;4(2):86-92. doi: 10.1002/cjp2.90. Epub 2018 Feb 5.

11.

Earth Microbiome Project and Global Systems Biology.

Gilbert JA, Jansson JK, Knight R.

mSystems. 2018 Apr 10;3(3). pii: e00217-17. doi: 10.1128/mSystems.00217-17. eCollection 2018 May-Jun. No abstract available.

12.

Current understanding of the human microbiome.

Gilbert JA, Blaser MJ, Caporaso JG, Jansson JK, Lynch SV, Knight R.

Nat Med. 2018 Apr 10;24(4):392-400. doi: 10.1038/nm.4517. Review.

PMID:
29634682
13.

Integrated Approaches to Analyze Big Data in the Perinatal/Neonatal Space.

Knight R.

Breastfeed Med. 2018 Apr;13(S1):S5-S6. doi: 10.1089/bfm.2018.29072.rjk. No abstract available.

PMID:
29624426
14.

Lateral prefrontal cortex lesion impairs regulation of internally and externally directed attention.

Kam JWY, Solbakk AK, Endestad T, Meling TR, Knight RT.

Neuroimage. 2018 Jul 15;175:91-99. doi: 10.1016/j.neuroimage.2018.03.063. Epub 2018 Mar 28.

PMID:
29604457
15.

ERK and the F-box protein β TRCP target STAT1 for degradation.

Soond SM, Townsend PA, Barry SP, Knight RA, Latchman DS, Stephanou A.

J Biol Chem. 2018 Mar 30;293(13):4954. doi: 10.1074/jbc.W118.002740. No abstract available.

16.

Dynamic frontotemporal systems process space and time in working memory.

Johnson EL, Adams JN, Solbakk AK, Endestad T, Larsson PG, Ivanovic J, Meling TR, Lin JJ, Knight RT.

PLoS Biol. 2018 Mar 30;16(3):e2004274. doi: 10.1371/journal.pbio.2004274. eCollection 2018 Mar.

17.

An Evolving Continuum of Care for the Kidney Disease Patient Will Help the Transplant Center Patient Navigator.

Knight RA.

Clin J Am Soc Nephrol. 2018 Apr 6;13(4):519-520. doi: 10.2215/CJN.02300218. Epub 2018 Mar 26. No abstract available.

PMID:
29581105
18.

KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.

Minich JJ, Zhu Q, Janssen S, Hendrickson R, Amir A, Vetter R, Hyde J, Doty MM, Stillwell K, Benardini J, Kim JH, Allen EE, Venkateswaran K, Knight R.

mSystems. 2018 Mar 13;3(3). pii: e00218-17. doi: 10.1128/mSystems.00218-17. eCollection 2018 May-Jun.

19.

Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome.

McCall LI, Tripathi A, Vargas F, Knight R, Dorrestein PC, Siqueira-Neto JL.

PLoS Negl Trop Dis. 2018 Mar 12;12(3):e0006344. doi: 10.1371/journal.pntd.0006344. eCollection 2018 Mar.

20.

Mapping Aquifer Systems with Airborne Electromagnetics in the Central Valley of California.

Knight R, Smith R, Asch T, Abraham J, Cannia J, Viezzoli A, Fogg G.

Ground Water. 2018 Mar 9. doi: 10.1111/gwat.12656. [Epub ahead of print]

PMID:
29520761
21.

Differentiating Adults With Mixed Age Victims From Those Who Exclusively Sexually Assault Children or Adults.

Rice J, Knight RA.

Sex Abuse. 2018 Mar 1:1079063218759324. doi: 10.1177/1079063218759324. [Epub ahead of print]

PMID:
29502475
22.

Clinicians' views of the training, use and maintenance of phonetic transcription in speech and language therapy.

Knight RA, Bandali C, Woodhead C, Vansadia P.

Int J Lang Commun Disord. 2018 Feb 28. doi: 10.1111/1460-6984.12381. [Epub ahead of print]

PMID:
29488291
23.

Creating a 3D microbial and chemical snapshot of a human habitat.

Kapono CA, Morton JT, Bouslimani A, Melnik AV, Orlinsky K, Knaan TL, Garg N, Vázquez-Baeza Y, Protsyuk I, Janssen S, Zhu Q, Alexandrov T, Smarr L, Knight R, Dorrestein PC.

Sci Rep. 2018 Feb 27;8(1):3669. doi: 10.1038/s41598-018-21541-4.

24.

Improving saliva shotgun metagenomics by chemical host DNA depletion.

Marotz CA, Sanders JG, Zuniga C, Zaramela LS, Knight R, Zengler K.

Microbiome. 2018 Feb 27;6(1):42. doi: 10.1186/s40168-018-0426-3.

25.

Ethics, effectiveness and population health information interventions: a Canadian analysis.

Greyson D, Knight R, Shoveller JA.

Health Promot Int. 2018 Feb 19. doi: 10.1093/heapro/day004. [Epub ahead of print]

PMID:
29471420
26.

Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models.

Belk A, Xu ZZ, Carter DO, Lynne A, Bucheli S, Knight R, Metcalf JL.

Genes (Basel). 2018 Feb 16;9(2). pii: E104. doi: 10.3390/genes9020104.

27.

Right Lower Quadrant Abdominal Pain: Do Not Forget About Ovarian Torsion on the Computed Tomography Scan.

Shyy W, Knight RS, Teismann NA.

J Emerg Med. 2018 Feb 17. pii: S0736-4679(18)30018-0. doi: 10.1016/j.jemermed.2018.01.006. [Epub ahead of print]

PMID:
29458980
28.

Orbitofrontal damage reduces auditory sensory response in humans.

Kam JWY, Solbakk AK, Funderud I, Endestad T, Meling TR, Knight RT.

Cortex. 2018 Apr;101:309-312. doi: 10.1016/j.cortex.2017.12.023. Epub 2018 Feb 3. No abstract available.

29.

A social media intervention to improve hypoglycemia management at a multicenter hospital: a quality improvement pilot for clinical nurses.

De Sousa F, Jackson J, Knight R, Cloutier E, Basa R, Fourney A, Devecseri K.

Contemp Nurse. 2018 Feb;54(1):44-51. doi: 10.1080/10376178.2018.1440180. Epub 2018 Mar 5.

PMID:
29447071
30.

Publisher Correction: Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Mar;3(3):388. doi: 10.1038/s41564-018-0114-x.

PMID:
29440750
31.

Coprolites reveal ecological interactions lost with the extinction of New Zealand birds.

Boast AP, Weyrich LS, Wood JR, Metcalf JL, Knight R, Cooper A.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1546-1551. doi: 10.1073/pnas.1712337115.

PMID:
29440415
32.

Bacterial density rather than diversity correlates with hatching success across different avian species.

Peralta-Sánchez JM, Martín-Platero AM, Wegener-Parfrey L, Martínez-Bueno M, Rodríguez-Ruano S, Navas-Molina JA, Vázquez-Baeza Y, Martín-Gálvez D, Martín-Vivaldi M, Ibáñez-Álamo JD, Knight R, Soler JJ.

FEMS Microbiol Ecol. 2018 Mar 1;94(3). doi: 10.1093/femsec/fiy022.

PMID:
29438507
33.

Correction for Morton et al., "Uncovering the Horseshoe Effect in Microbial Analyses".

Morton JT, Toran L, Edlund A, Metcalf JL, Lauber C, Knight R.

mSystems. 2018 Feb 6;3(1). pii: e00006-18. doi: 10.1128/mSystems.00006-18. eCollection 2018 Jan-Feb.

34.

Expanding our Understanding of the Role of the Microbiome in Health and Disease.

Knight R.

Arch Med Res. 2017 Nov;48(8):663-665. doi: 10.1016/j.arcmed.2018.02.002. Epub 2018 Feb 9. No abstract available.

PMID:
29429588
35.

A taxometric investigation of psychopathy in women.

Guay JP, Knight RA, Ruscio J, Hare RD.

Psychiatry Res. 2018 Mar;261:565-573. doi: 10.1016/j.psychres.2018.01.015.

PMID:
29407724
36.

Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder.

Nguyen TT, Kosciolek T, Eyler LT, Knight R, Jeste DV.

J Psychiatr Res. 2018 Apr;99:50-61. doi: 10.1016/j.jpsychires.2018.01.013. Epub 2018 Jan 31. Review.

PMID:
29407287
37.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

38.

Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction.

Zhou Y, Xu ZZ, He Y, Yang Y, Liu L, Lin Q, Nie Y, Li M, Zhi F, Liu S, Amir A, González A, Tripathi A, Chen M, Wu GD, Knight R, Zhou H, Chen Y.

mSystems. 2018 Jan 30;3(1). pii: e00188-17. doi: 10.1128/mSystems.00188-17. eCollection 2018 Jan-Feb.

39.

Long-term complications following tibial plateau levelling osteotomy in small dogs with tibial plateau angles > 30°.

Knight R, Danielski A.

Vet Rec. 2018 Apr 21;182(16):461. doi: 10.1136/vr.104491. Epub 2018 Jan 26.

PMID:
29374100
40.

The patient health questionnaire (PHQ-9): an aid to assessment of patient-reported functional outcomes after spinal surgery.

Tuck AN, Scribani MB, Grainger SD, Johns CA, Knight RQ.

Spine J. 2018 Jan 20. pii: S1529-9430(18)30006-8. doi: 10.1016/j.spinee.2018.01.004. [Epub ahead of print]

PMID:
29366984
41.

Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018.

Galluzzi L, Vitale I, Aaronson SA, Abrams JM, Adam D, Agostinis P, Alnemri ES, Altucci L, Amelio I, Andrews DW, Annicchiarico-Petruzzelli M, Antonov AV, Arama E, Baehrecke EH, Barlev NA, Bazan NG, Bernassola F, Bertrand MJM, Bianchi K, Blagosklonny MV, Blomgren K, Borner C, Boya P, Brenner C, Campanella M, Candi E, Carmona-Gutierrez D, Cecconi F, Chan FK, Chandel NS, Cheng EH, Chipuk JE, Cidlowski JA, Ciechanover A, Cohen GM, Conrad M, Cubillos-Ruiz JR, Czabotar PE, D'Angiolella V, Dawson TM, Dawson VL, De Laurenzi V, De Maria R, Debatin KM, DeBerardinis RJ, Deshmukh M, Di Daniele N, Di Virgilio F, Dixit VM, Dixon SJ, Duckett CS, Dynlacht BD, El-Deiry WS, Elrod JW, Fimia GM, Fulda S, García-Sáez AJ, Garg AD, Garrido C, Gavathiotis E, Golstein P, Gottlieb E, Green DR, Greene LA, Gronemeyer H, Gross A, Hajnoczky G, Hardwick JM, Harris IS, Hengartner MO, Hetz C, Ichijo H, Jäättelä M, Joseph B, Jost PJ, Juin PP, Kaiser WJ, Karin M, Kaufmann T, Kepp O, Kimchi A, Kitsis RN, Klionsky DJ, Knight RA, Kumar S, Lee SW, Lemasters JJ, Levine B, Linkermann A, Lipton SA, Lockshin RA, López-Otín C, Lowe SW, Luedde T, Lugli E, MacFarlane M, Madeo F, Malewicz M, Malorni W, Manic G, Marine JC, Martin SJ, Martinou JC, Medema JP, Mehlen P, Meier P, Melino S, Miao EA, Molkentin JD, Moll UM, Muñoz-Pinedo C, Nagata S, Nuñez G, Oberst A, Oren M, Overholtzer M, Pagano M, Panaretakis T, Pasparakis M, Penninger JM, Pereira DM, Pervaiz S, Peter ME, Piacentini M, Pinton P, Prehn JHM, Puthalakath H, Rabinovich GA, Rehm M, Rizzuto R, Rodrigues CMP, Rubinsztein DC, Rudel T, Ryan KM, Sayan E, Scorrano L, Shao F, Shi Y, Silke J, Simon HU, Sistigu A, Stockwell BR, Strasser A, Szabadkai G, Tait SWG, Tang D, Tavernarakis N, Thorburn A, Tsujimoto Y, Turk B, Vanden Berghe T, Vandenabeele P, Vander Heiden MG, Villunger A, Virgin HW, Vousden KH, Vucic D, Wagner EF, Walczak H, Wallach D, Wang Y, Wells JA, Wood W, Yuan J, Zakeri Z, Zhivotovsky B, Zitvogel L, Melino G, Kroemer G.

Cell Death Differ. 2018 Mar;25(3):486-541. doi: 10.1038/s41418-017-0012-4. Epub 2018 Jan 23. Review.

42.

Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics).

Maurer-Alcalá XX, Knight R, Katz LA.

MBio. 2018 Jan 9;9(1). pii: e01836-17. doi: 10.1128/mBio.01836-17.

43.

The human microbiome in evolution.

Davenport ER, Sanders JG, Song SJ, Amato KR, Clark AG, Knight R.

BMC Biol. 2017 Dec 27;15(1):127. doi: 10.1186/s12915-017-0454-7. Review.

44.

Exposures of male rats to environmental chemicals [bisphenol A and di (2-ethylhexyl) phthalate] affected expression of several proteins in the developing epididymis.

Abdel-Maksoud FM, Knight R, Waler K, Yaghoubi-Yeganeh N, Olukunle JO, Thompson H, Panizzi JR, Akingbemi BT.

Andrology. 2018 Jan;6(1):214-222. doi: 10.1111/andr.12451.

PMID:
29280353
45.

Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P.

Nat Microbiol. 2018 Jan;3(1):8-16. doi: 10.1038/s41564-017-0072-8. Epub 2017 Dec 18. Review. Erratum in: Nat Microbiol. 2018 Feb 13;:.

PMID:
29255284
46.

Differential Sources for 2 Neural Signatures of Target Detection: An Electrocorticography Study.

Kam JWY, Szczepanski SM, Canolty RT, Flinker A, Auguste KI, Crone NE, Kirsch HE, Kuperman RA, Lin JJ, Parvizi J, Knight RT.

Cereb Cortex. 2018 Jan 1;28(1):9-20. doi: 10.1093/cercor/bhw343.

PMID:
29253249
47.

Old Brains Come Uncoupled in Sleep: Slow Wave-Spindle Synchrony, Brain Atrophy, and Forgetting.

Helfrich RF, Mander BA, Jagust WJ, Knight RT, Walker MP.

Neuron. 2018 Jan 3;97(1):221-230.e4. doi: 10.1016/j.neuron.2017.11.020. Epub 2017 Dec 14.

PMID:
29249289
48.

Integrin-β4 is a novel transcriptional target of TAp73.

Xie N, Vikhreva P, Annicchiarico-Petruzzelli M, Amelio I, Barlev N, Knight RA, Melino G.

Cell Cycle. 2018;17(5):589-594. doi: 10.1080/15384101.2017.1403684. Epub 2018 Feb 8.

PMID:
29233040
49.

Leukotriene B4-receptor-1 mediated host response shapes gut microbiota and controls colon tumor progression.

Jala VR, Maturu P, Bodduluri SR, Krishnan E, Mathis S, Subbarao K, Wang M, Jenson AB, Proctor ML, Rouchka EC, Knight R, Haribabu B.

Oncoimmunology. 2017 Aug 10;6(12):e1361593. doi: 10.1080/2162402X.2017.1361593. eCollection 2017.

PMID:
29209564
50.

Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality.

Raulo A, Ruokolainen L, Lane A, Amato K, Knight R, Leigh S, Stumpf R, White B, Nelson KE, Baden AL, Tecot SR.

J Anim Ecol. 2018 Mar;87(2):388-399. doi: 10.1111/1365-2656.12781. Epub 2017 Dec 5.

PMID:
29205327

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