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Items: 1 to 50 of 53

1.

Diversity of copy number variation in a worldwide population of sheep.

Yang L, Xu L, Zhou Y, Liu M, Wang L, Kijas JW, Zhang H, Li L, Liu GE.

Genomics. 2017 Sep 14. pii: S0888-7543(17)30082-4. doi: 10.1016/j.ygeno.2017.09.005. [Epub ahead of print]

PMID:
28917637
2.

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.

Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium.

BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8.

3.

Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers.

Brito LF, Kijas JW, Ventura RV, Sargolzaei M, Porto-Neto LR, Cánovas A, Feng Z, Jafarikia M, Schenkel FS.

BMC Genomics. 2017 Mar 14;18(1):229. doi: 10.1186/s12864-017-3610-0.

4.

Selection signature analysis reveals genes associated with tail type in Chinese indigenous sheep.

Yuan Z, Liu E, Liu Z, Kijas JW, Zhu C, Hu S, Ma X, Zhang L, Du L, Wang H, Wei C.

Anim Genet. 2017 Feb;48(1):55-66. doi: 10.1111/age.12477. Epub 2016 Nov 3.

PMID:
27807880
5.

Copy number variants in the sheep genome detected using multiple approaches.

Jenkins GM, Goddard ME, Black MA, Brauning R, Auvray B, Dodds KG, Kijas JW, Cockett N, McEwan JC.

BMC Genomics. 2016 Jun 8;17:441. doi: 10.1186/s12864-016-2754-7.

6.

Genome-wide analysis reveals adaptation to high altitudes in Tibetan sheep.

Wei C, Wang H, Liu G, Zhao F, Kijas JW, Ma Y, Lu J, Zhang L, Cao J, Wu M, Wang G, Liu R, Liu Z, Zhang S, Liu C, Du L.

Sci Rep. 2016 May 27;6:26770. doi: 10.1038/srep26770.

7.

Genome-wide association reveals the locus responsible for four-horned ruminant.

Kijas JW, Hadfield T, Naval Sanchez M, Cockett N.

Anim Genet. 2016 Apr;47(2):258-62. doi: 10.1111/age.12409. Epub 2016 Jan 14.

PMID:
26767438
8.

Compression distance can discriminate animals by genetic profile, build relationship matrices and estimate breeding values.

Hudson NJ, Porto-Neto L, Kijas JW, Reverter A.

Genet Sel Evol. 2015 Oct 13;47:78. doi: 10.1186/s12711-015-0158-9.

9.

Characterization of linkage disequilibrium, consistency of gametic phase and admixture in Australian and Canadian goats.

Brito LF, Jafarikia M, Grossi DA, Kijas JW, Porto-Neto LR, Ventura RV, Salgorzaei M, Schenkel FS.

BMC Genet. 2015 Jun 25;16:67. doi: 10.1186/s12863-015-0220-1.

10.

Beta-globin gene evolution in the ruminants: evidence for an ancient origin of sheep haplotype B.

Jiang Y, Wang X, Kijas JW, Dalrymple BP.

Anim Genet. 2015 Oct;46(5):506-14. doi: 10.1111/age.12318. Epub 2015 Jun 19.

PMID:
26096044
11.

Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication.

Dong Y, Zhang X, Xie M, Arefnezhad B, Wang Z, Wang W, Feng S, Huang G, Guan R, Shen W, Bunch R, McCulloch R, Li Q, Li B, Zhang G, Xu X, Kijas JW, Salekdeh GH, Wang W, Jiang Y.

BMC Genomics. 2015 Jun 5;16:431. doi: 10.1186/s12864-015-1606-1.

12.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium.

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.

13.

SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates.

Gonçalves da Silva A, Barendse W, Kijas JW, Barris WC, McWilliam S, Bunch RJ, McCullough R, Harrison B, Hoelzel AR, England PR.

Mol Ecol Resour. 2015 Jul;15(4):723-36. doi: 10.1111/1755-0998.12343. Epub 2014 Nov 23.

PMID:
25388640
14.

Haplotype-based analysis of selective sweeps in sheep.

Kijas JW.

Genome. 2014 Aug;57(8):433-7. doi: 10.1139/gen-2014-0049.

PMID:
25372788
15.

Adaptations to climate-mediated selective pressures in sheep.

Lv FH, Agha S, Kantanen J, Colli L, Stucki S, Kijas JW, Joost S, Li MH, Ajmone Marsan P.

Mol Biol Evol. 2014 Dec;31(12):3324-43. doi: 10.1093/molbev/msu264. Epub 2014 Sep 23.

16.

Linkage disequilibrium over short physical distances measured in sheep using a high-density SNP chip.

Kijas JW, Porto-Neto L, Dominik S, Reverter A, Bunch R, McCulloch R, Hayes BJ, Brauning R, McEwan J; International Sheep Genomics Consortium.

Anim Genet. 2014 Oct;45(5):754-7. doi: 10.1111/age.12197. Epub 2014 Jul 17.

PMID:
25040320
17.

SNPs for parentage testing and traceability in globally diverse breeds of sheep.

Heaton MP, Leymaster KA, Kalbfleisch TS, Kijas JW, Clarke SM, McEwan J, Maddox JF, Basnayake V, Petrik DT, Simpson B, Smith TP, Chitko-McKown CG; International Sheep Genomics Consortium.

PLoS One. 2014 Apr 16;9(4):e94851. doi: 10.1371/journal.pone.0094851. eCollection 2014.

18.

The extent of linkage disequilibrium in beef cattle breeds using high-density SNP genotypes.

Porto-Neto LR, Kijas JW, Reverter A.

Genet Sel Evol. 2014 Mar 24;46:22. doi: 10.1186/1297-9686-46-22.

19.

Genomewide association for a dominant pigmentation gene in sheep.

Kijas JW, Serrano M, McCulloch R, Li Y, Salces Ortiz J, Calvo JH, Pérez-Guzmán MD; International Sheep Genomics Consortium.

J Anim Breed Genet. 2013 Dec;130(6):468-75. doi: 10.1111/jbg.12048. Epub 2013 Aug 26.

PMID:
24236609
20.

Introgression and the fate of domesticated genes in a wild mammal population.

Feulner PGD, Gratten J, Kijas JW, Visscher PM, Pemberton JM, Slate J.

Mol Ecol. 2013 Aug;22(16):4210-4221. doi: 10.1111/mec.12378. Epub 2013 Jun 20.

PMID:
23786437
21.

Detecting regions of homozygosity to map the cause of recessively inherited disease.

Kijas JW.

Methods Mol Biol. 2013;1019:331-45. doi: 10.1007/978-1-62703-447-0_14.

PMID:
23756898
22.

Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep.

Heaton MP, Kalbfleisch TS, Petrik DT, Simpson B, Kijas JW, Clawson ML, Chitko-McKown CG, Harhay GP, Leymaster KA; International Sheep Genomics Consortium.

PLoS One. 2013;8(2):e55490. doi: 10.1371/journal.pone.0055490. Epub 2013 Feb 11.

23.

Genetic diversity and investigation of polledness in divergent goat populations using 52 088 SNPs.

Kijas JW, Ortiz JS, McCulloch R, James A, Brice B, Swain B, Tosser-Klopp G; International Goat Genome Consortium.

Anim Genet. 2013 Jun;44(3):325-35. doi: 10.1111/age.12011. Epub 2012 Dec 6.

PMID:
23216229
24.

Consistent divergence times and allele sharing measured from cross-species application of SNP chips developed for three domestic species.

Miller JM, Kijas JW, Heaton MP, McEwan JC, Coltman DW.

Mol Ecol Resour. 2012 Nov;12(6):1145-50. doi: 10.1111/1755-0998.12017. Epub 2012 Sep 21.

PMID:
22994965
25.

Tracking the emergence of a new breed using 49,034 SNP in sheep.

Kijas JW, Miller JE, Hadfield T, McCulloch R, Garcia-Gamez E, Porto Neto LR, Cockett N.

PLoS One. 2012;7(7):e41508. doi: 10.1371/journal.pone.0041508. Epub 2012 Jul 27.

26.

Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection.

Kijas JW, Lenstra JA, Hayes B, Boitard S, Porto Neto LR, San Cristobal M, Servin B, McCulloch R, Whan V, Gietzen K, Paiva S, Barendse W, Ciani E, Raadsma H, McEwan J, Dalrymple B; International Sheep Genomics Consortium Members.

PLoS Biol. 2012 Feb;10(2):e1001258. doi: 10.1371/journal.pbio.1001258. Epub 2012 Feb 7.

27.

Accuracy of genotype imputation in sheep breeds.

Hayes BJ, Bowman PJ, Daetwyler HD, Kijas JW, van der Werf JH.

Anim Genet. 2012 Feb;43(1):72-80. doi: 10.1111/j.1365-2052.2011.02208.x. Epub 2011 May 27.

PMID:
22221027
28.

Genetic architecture of gene expression in ovine skeletal muscle.

Kogelman LJ, Byrne K, Vuocolo T, Watson-Haigh NS, Kadarmideen HN, Kijas JW, Oddy HV, Gardner GE, Gondro C, Tellam RL.

BMC Genomics. 2011 Dec 15;12:607. doi: 10.1186/1471-2164-12-607.

29.

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population.

Johnston SE, McEwan JC, Pickering NK, Kijas JW, Beraldi D, Pilkington JG, Pemberton JM, Slate J.

Mol Ecol. 2011 Jun;20(12):2555-66. doi: 10.1111/j.1365-294X.2011.05076.x. Epub 2011 Mar 29.

PMID:
21651634
30.

Analysis of copy number variants in the cattle genome.

Kijas JW, Barendse W, Barris W, Harrison B, McCulloch R, McWilliam S, Whan V.

Gene. 2011 Aug 15;482(1-2):73-7. doi: 10.1016/j.gene.2011.04.011. Epub 2011 May 18.

PMID:
21620936
31.

A genome-wide set of SNPs detects population substructure and long range linkage disequilibrium in wild sheep.

Miller JM, Poissant J, Kijas JW, Coltman DW; International Sheep Genomics Consortium.

Mol Ecol Resour. 2011 Mar;11(2):314-22. doi: 10.1111/j.1755-0998.2010.02918.x. Epub 2010 Sep 10.

PMID:
21429138
32.

Haplogroup relationships between domestic and wild sheep resolved using a mitogenome panel.

Meadows JR, Hiendleder S, Kijas JW.

Heredity (Edinb). 2011 Apr;106(4):700-6. doi: 10.1038/hdy.2010.122. Epub 2010 Oct 13.

33.

The sheep genome reference sequence: a work in progress.

International Sheep Genomics Consortium, Archibald AL, Cockett NE, Dalrymple BP, Faraut T, Kijas JW, Maddox JF, McEwan JC, Hutton Oddy V, Raadsma HW, Wade C, Wang J, Wang W, Xun X.

Anim Genet. 2010 Oct;41(5):449-53. doi: 10.1111/j.1365-2052.2010.02100.x. Review.

PMID:
20809919
34.

Technical note: High fidelity of whole-genome amplified sheep (Ovis aries) deoxyribonucleic acid using a high-density single nucleotide polymorphism array-based genotyping platform.

Magee DA, Park SD, Scraggs E, Murphy AM, Doherty ML, Kijas JW; International Sheep Genomics Consortium, MacHugh DE.

J Anim Sci. 2010 Oct;88(10):3183-6. doi: 10.2527/jas.2009-2723. Epub 2010 Jun 18.

PMID:
20562352
35.

East Friesian sheep carry a Myostatin allele known to cause muscle hypertrophy in other breeds.

Bignell CW, Malau-Aduli AE, Nichols PD, McCulloch R, Kijas JW.

Anim Genet. 2010 Aug;41(4):445-6. doi: 10.1111/j.1365-2052.2010.02021.x. Epub 2010 Mar 3. No abstract available.

PMID:
20219067
36.

Evaluation of 16 loci to examine the cross-species utility of single nucleotide polymorphism arrays.

Sechi T, Coltman DW, Kijas JW.

Anim Genet. 2010 Apr;41(2):199-202. doi: 10.1111/j.1365-2052.2009.01972.x. Epub 2009 Sep 26.

PMID:
19793265
37.

A genome wide survey of SNP variation reveals the genetic structure of sheep breeds.

Kijas JW, Townley D, Dalrymple BP, Heaton MP, Maddox JF, McGrath A, Wilson P, Ingersoll RG, McCulloch R, McWilliam S, Tang D, McEwan J, Cockett N, Oddy VH, Nicholas FW, Raadsma H; International Sheep Genomics Consortium.

PLoS One. 2009;4(3):e4668. doi: 10.1371/journal.pone.0004668. Epub 2009 Mar 3.

38.

Re-sequencing regions of the ovine Y chromosome in domestic and wild sheep reveals novel paternal haplotypes.

Meadows JR, Kijas JW.

Anim Genet. 2009 Feb;40(1):119-23. doi: 10.1111/j.1365-2052.2008.01799.x. Epub 2008 Nov 11.

PMID:
19016675
39.

Linkage disequilibrium compared between five populations of domestic sheep.

Meadows JR, Chan EK, Kijas JW.

BMC Genet. 2008 Sep 30;9:61. doi: 10.1186/1471-2156-9-61.

40.

Evidence for multiple alleles effecting muscling and fatness at the ovine GDF8 locus.

Kijas JW, McCulloch R, Edwards JE, Oddy VH, Lee SH, van der Werf J.

BMC Genet. 2007 Nov 8;8:80.

41.

Mitochondrial haplotypes reveal a strong genetic structure for three Indian sheep breeds.

Pardeshi VC, Kadoo NY, Sainani MN, Meadows JR, Kijas JW, Gupta VS.

Anim Genet. 2007 Oct;38(5):460-6. Epub 2007 Aug 24.

PMID:
17725686
42.

Five ovine mitochondrial lineages identified from sheep breeds of the near East.

Meadows JR, Cemal I, Karaca O, Gootwine E, Kijas JW.

Genetics. 2007 Mar;175(3):1371-9. Epub 2006 Dec 28.

43.

The effect of genetic variation of the retinoic acid receptor-related orphan receptor C gene on fatness in cattle.

Barendse W, Bunch RJ, Kijas JW, Thomas MB.

Genetics. 2007 Feb;175(2):843-53. Epub 2006 Dec 6.

44.

Globally dispersed Y chromosomal haplotypes in wild and domestic sheep.

Meadows JR, Hanotte O, Drögemüller C, Calvo J, Godfrey R, Coltman D, Maddox JF, Marzanov N, Kantanen J, Kijas JW.

Anim Genet. 2006 Oct;37(5):444-53.

PMID:
16978172
45.

Linkage disequilibrium mapping in domestic dog breeds narrows the progressive rod-cone degeneration interval and identifies ancestral disease-transmitting chromosome.

Goldstein O, Zangerl B, Pearce-Kelling S, Sidjanin DJ, Kijas JW, Felix J, Acland GM, Aguirre GD.

Genomics. 2006 Nov;88(5):541-50. Epub 2006 Jul 20.

46.

Sequence diversity and rates of molecular evolution between sheep and cattle genes.

Kijas JW, Menzies M, Ingham A.

Anim Genet. 2006 Apr;37(2):171-4.

PMID:
16573533
47.

Mitochondrial sequence reveals high levels of gene flow between breeds of domestic sheep from Asia and Europe.

Meadows JR, Li K, Kantanen J, Tapio M, Sipos W, Pardeshi V, Gupta V, Calvo JH, Whan V, Norris B, Kijas JW.

J Hered. 2005 Sep-Oct;96(5):494-501. Epub 2005 Aug 31.

PMID:
16135704
48.

Nucleotide diversity on the ovine Y chromosome.

Meadows JR, Hawken RJ, Kijas JW.

Anim Genet. 2004 Oct;35(5):379-85.

PMID:
15373741
49.

Cloning of the canine ABCA4 gene and evaluation in canine cone-rod dystrophies and progressive retinal atrophies.

Kijas JW, Zangerl B, Miller B, Nelson J, Kirkness EF, Aguirre GD, Acland GM.

Mol Vis. 2004 Mar 29;10:223-32.

50.

Cloning, mapping, and retinal expression of the canine ciliary neurotrophic factor receptor alpha (CNTFRalpha).

Beltran WA, Zhang Q, Kijas JW, Gu D, Rohrer H, Jordan JA, Aguirre GD.

Invest Ophthalmol Vis Sci. 2003 Aug;44(8):3642-9.

PMID:
12882818

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