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BPM-CUL3 E3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of DREB2A in Arabidopsis.

Morimoto K, Ohama N, Kidokoro S, Mizoi J, Takahashi F, Todaka D, Mogami J, Sato H, Qin F, Kim JS, Fukao Y, Fujiwara M, Shinozaki K, Yamaguchi-Shinozaki K.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8528-E8536. doi: 10.1073/pnas.1704189114. Epub 2017 Sep 18.


Corrigendum: Crystal structures of highly simplified BPTIs provide insights into hydration-driven increase of unfolding enthalpy.

Monirul Islam M, Yohda M, Kidokoro SI, Kuroda Y.

Sci Rep. 2017 May 9;7:46798. doi: 10.1038/srep46798. No abstract available.


Thermodynamics of the Thermal Denaturation of Acid Molten Globule State of Cytochrome c Indicate a Reversible High-Temperature Oligomerization Process.

Nakamura S, Saotome T, Nakazawa A, Fukuda M, Kuroda Y, Kidokoro SI.

Biochemistry. 2017 May 9;56(18):2372-2378. doi: 10.1021/acs.biochem.6b01225. Epub 2017 May 1.


Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.

Kidokoro S, Yoneda K, Takasaki H, Takahashi F, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Cell. 2017 Apr;29(4):760-774. doi: 10.1105/tpc.16.00669. Epub 2017 Mar 28.


Crystal structures of highly simplified BPTIs provide insights into hydration-driven increase of unfolding enthalpy.

Islam MM, Yohda M, Kidokoro SI, Kuroda Y.

Sci Rep. 2017 Mar 7;7:41205. doi: 10.1038/srep41205. Erratum in: Sci Rep. 2017 May 09;7:46798.


ABA-unresponsive SnRK2 protein kinases regulate mRNA decay under osmotic stress in plants.

Soma F, Mogami J, Yoshida T, Abekura M, Takahashi F, Kidokoro S, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K.

Nat Plants. 2017 Jan 6;3:16204. doi: 10.1038/nplants.2016.204.


Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions.

Todaka D, Zhao Y, Yoshida T, Kudo M, Kidokoro S, Mizoi J, Kodaira KS, Takebayashi Y, Kojima M, Sakakibara H, Toyooka K, Sato M, Fernie AR, Shinozaki K, Yamaguchi-Shinozaki K.

Plant J. 2017 Apr;90(1):61-78. doi: 10.1111/tpj.13468. Epub 2017 Feb 11.


Conserved and unique thermodynamic properties of lactate dehydrogenases in an ectothermic organism, the teleost Microstomus achne, and an endothermic organism, bovine.

Yonezawa M, Nakagawa M, Nakamura S, Goto T, Sugawara K, Kidokoro SI, Wakui H, Nunomura W.

J Biochem. 2016 Nov;160(5):299-308. Epub 2016 Jun 15.


Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.

Kudo M, Kidokoro S, Yoshida T, Mizoi J, Todaka D, Fernie AR, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Biotechnol J. 2017 Apr;15(4):458-471. doi: 10.1111/pbi.12644. Epub 2016 Nov 14.


Enzymatic and thermodynamic profiles of a heterotetramer lactate dehydrogenase isozyme in swine.

Goto T, Sugawara K, Nakamura S, Kidokoro SI, Wakui H, Nunomura W.

Biochem Biophys Res Commun. 2016 Oct 28;479(4):860-867. doi: 10.1016/j.bbrc.2016.09.118. Epub 2016 Sep 23.


Roles of N287 in catalysis and product formation of amylomaltase from Corynebacterium glutamicum.

Nimpiboon P, Krusong K, Kaulpiboon J, Kidokoro S, Pongsawasdi P.

Biochem Biophys Res Commun. 2016 Sep 16;478(2):759-64. doi: 10.1016/j.bbrc.2016.08.021. Epub 2016 Aug 6.


Unusual Reversible Oligomerization of Unfolded Dengue Envelope Protein Domain 3 at High Temperatures and Its Abolition by a Point Mutation.

Saotome T, Nakamura S, Islam MM, Nakazawa A, Dellarole M, Arisaka F, Kidokoro S, Kuroda Y.

Biochemistry. 2016 Aug 16;55(32):4469-75. doi: 10.1021/acs.biochem.6b00431. Epub 2016 Aug 4.


Mutagenesis for improvement of activity and thermostability of amylomaltase from Corynebacterium glutamicum.

Nimpiboon P, Kaulpiboon J, Krusong K, Nakamura S, Kidokoro S, Pongsawasdi P.

Int J Biol Macromol. 2016 May;86:820-8. doi: 10.1016/j.ijbiomac.2016.02.022. Epub 2016 Feb 10.


The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice.

Sato H, Todaka D, Kudo M, Mizoi J, Kidokoro S, Zhao Y, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Biotechnol J. 2016 Aug;14(8):1756-67. doi: 10.1111/pbi.12535. Epub 2016 Feb 3.


IATC, DSC, and PPC Analysis of Reversible and Multistate Structural Transition of Cytochrome c.

Kidokoro S, Nakamura S.

Methods Enzymol. 2016;567:391-412. doi: 10.1016/bs.mie.2015.08.002. Epub 2015 Sep 4.


The impact of a single-nucleotide mutation of bgl2 on cellulase induction in a Trichoderma reesei mutant.

Shida Y, Yamaguchi K, Nitta M, Nakamura A, Takahashi M, Kidokoro S, Mori K, Tashiro K, Kuhara S, Matsuzawa T, Yaoi K, Sakamoto Y, Tanaka N, Morikawa Y, Ogasawara W.

Biotechnol Biofuels. 2015 Dec 30;8:230. doi: 10.1186/s13068-015-0420-y. eCollection 2015.


The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.

Ohama N, Kusakabe K, Mizoi J, Zhao H, Kidokoro S, Koizumi S, Takahashi F, Ishida T, Yanagisawa S, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Cell. 2016 Jan;28(1):181-201. doi: 10.1105/tpc.15.00435. Epub 2015 Dec 29.


Two distinct families of protein kinases are required for plant growth under high external Mg2+ concentrations in Arabidopsis.

Mogami J, Fujita Y, Yoshida T, Tsukiori Y, Nakagami H, Nomura Y, Fujiwara T, Nishida S, Yanagisawa S, Ishida T, Takahashi F, Morimoto K, Kidokoro S, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Physiol. 2015 Mar;167(3):1039-57. doi: 10.1104/pp.114.249870. Epub 2015 Jan 22.


Soybean DREB1/CBF-type transcription factors function in heat and drought as well as cold stress-responsive gene expression.

Kidokoro S, Watanabe K, Ohori T, Moriwaki T, Maruyama K, Mizoi J, Myint Phyu Sin Htwe N, Fujita Y, Sekita S, Shinozaki K, Yamaguchi-Shinozaki K.

Plant J. 2015 Feb;81(3):505-18. doi: 10.1111/tpj.12746.


Unique structural changes in calcium-bound calmodulin upon interaction with protein 4.1R FERM domain: novel insights into the calcium-dependent regulation of 4.1R FERM domain binding to membrane proteins by calmodulin.

Nunomura W, Isozumi N, Nakamura S, Jinbo Y, Ohki S, Kidokoro S, Wakui H, Takakuwa Y.

Cell Biochem Biophys. 2014 May;69(1):7-19. doi: 10.1007/s12013-013-9758-6.


Constant enthalpy change value during pyrophosphate hydrolysis within the physiological limits of NaCl.

Wakai S, Kidokoro S, Masaki K, Nakasone K, Sambongi Y.

J Biol Chem. 2013 Oct 11;288(41):29247-51. doi: 10.1074/jbc.M113.502963. Epub 2013 Aug 21.


OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes.

Jan A, Maruyama K, Todaka D, Kidokoro S, Abo M, Yoshimura E, Shinozaki K, Nakashima K, Yamaguchi-Shinozaki K.

Plant Physiol. 2013 Mar;161(3):1202-16. doi: 10.1104/pp.112.205385. Epub 2013 Jan 7.


GmDREB2A;2, a canonical DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN2-type transcription factor in soybean, is posttranslationally regulated and mediates dehydration-responsive element-dependent gene expression.

Mizoi J, Ohori T, Moriwaki T, Kidokoro S, Todaka D, Maruyama K, Kusakabe K, Osakabe Y, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Physiol. 2013 Jan;161(1):346-61. doi: 10.1104/pp.112.204875. Epub 2012 Nov 14.


Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.

Todaka D, Nakashima K, Maruyama K, Kidokoro S, Osakabe Y, Ito Y, Matsukura S, Fujita Y, Yoshiwara K, Ohme-Takagi M, Kojima M, Sakakibara H, Shinozaki K, Yamaguchi-Shinozaki K.

Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15947-52. Epub 2012 Sep 10.


Arabidopsis growth-regulating factor7 functions as a transcriptional repressor of abscisic acid- and osmotic stress-responsive genes, including DREB2A.

Kim JS, Mizoi J, Kidokoro S, Maruyama K, Nakajima J, Nakashima K, Mitsuda N, Takiguchi Y, Ohme-Takagi M, Kondou Y, Yoshizumi T, Matsui M, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Cell. 2012 Aug;24(8):3393-405. Epub 2012 Aug 31.


Volumetric properties of the molten globule state of cytochrome c in the thermal three-state transition evaluated by pressure perturbation calorimetry.

Nakamura S, Kidokoro S.

J Phys Chem B. 2012 Feb 16;116(6):1927-32. doi: 10.1021/jp209686e. Epub 2012 Feb 6.


Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice, and soybean.

Maruyama K, Todaka D, Mizoi J, Yoshida T, Kidokoro S, Matsukura S, Takasaki H, Sakurai T, Yamamoto YY, Yoshiwara K, Kojima M, Sakakibara H, Shinozaki K, Yamaguchi-Shinozaki K.

DNA Res. 2012;19(1):37-49. doi: 10.1093/dnares/dsr040. Epub 2011 Dec 19.


Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression.

Yoshida T, Ohama N, Nakajima J, Kidokoro S, Mizoi J, Nakashima K, Maruyama K, Kim JM, Seki M, Todaka D, Osakabe Y, Sakuma Y, Schöffl F, Shinozaki K, Yamaguchi-Shinozaki K.

Mol Genet Genomics. 2011 Dec;286(5-6):321-32. doi: 10.1007/s00438-011-0647-7. Epub 2011 Sep 20.


Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditions.

Kodaira KS, Qin F, Tran LS, Maruyama K, Kidokoro S, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Physiol. 2011 Oct;157(2):742-56. doi: 10.1104/pp.111.182683. Epub 2011 Aug 18.


Structural stabilization of protein 4.1R FERM domain upon binding to apo-calmodulin: novel insights into the biological significance of the calcium-independent binding of calmodulin to protein 4.1R.

Nunomura W, Sasakura D, Shiba K, Nakamura S, Kidokoro S, Takakuwa Y.

Biochem J. 2011 Dec 15;440(3):367-74. doi: 10.1042/BJ20110676. Erratum in: Biochem J. 2012 Apr 1;443(1):327.


Syntheses of cellotriose and cellotetraose analogues as transition state mimics for mechanistic studies of cellulases.

Noguchi S, Takemoto S, Kidokoro S, Yamamoto K, Hashimoto M.

Bioorg Med Chem. 2011 Jun 15;19(12):3812-30. doi: 10.1016/j.bmc.2011.04.048. Epub 2011 May 3.


Thermodynamic and structural properties of the acid molten globule state of horse cytochrome C.

Nakamura S, Seki Y, Katoh E, Kidokoro S.

Biochemistry. 2011 Apr 19;50(15):3116-26. doi: 10.1021/bi101806b. Epub 2011 Mar 25.


Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations.

Xiang H, Takeuchi H, Tsunoda Y, Nakajima M, Murata K, Ueguchi-Tanaka M, Kidokoro S, Kezuka Y, Nonaka T, Matsuoka M, Katoh E.

J Mol Recognit. 2011 Mar-Apr;24(2):275-82. doi: 10.1002/jmr.1049.


The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.

Takasaki H, Maruyama K, Kidokoro S, Ito Y, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K, Nakashima K.

Mol Genet Genomics. 2010 Sep;284(3):173-83. doi: 10.1007/s00438-010-0557-0. Epub 2010 Jul 15.


Two closely related subclass II SnRK2 protein kinases cooperatively regulate drought-inducible gene expression.

Mizoguchi M, Umezawa T, Nakashima K, Kidokoro S, Takasaki H, Fujita Y, Yamaguchi-Shinozaki K, Shinozaki K.

Plant Cell Physiol. 2010 May;51(5):842-7. doi: 10.1093/pcp/pcq041. Epub 2010 Apr 7.


AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation.

Yoshida T, Fujita Y, Sayama H, Kidokoro S, Maruyama K, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K.

Plant J. 2010 Feb;61(4):672-85. doi: 10.1111/j.1365-313X.2009.04092.x. Epub 2009 Nov 26.


Three SnRK2 protein kinases are the main positive regulators of abscisic acid signaling in response to water stress in Arabidopsis.

Fujita Y, Nakashima K, Yoshida T, Katagiri T, Kidokoro S, Kanamori N, Umezawa T, Fujita M, Maruyama K, Ishiyama K, Kobayashi M, Nakasone S, Yamada K, Ito T, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Cell Physiol. 2009 Dec;50(12):2123-32. doi: 10.1093/pcp/pcp147.


The phytochrome-interacting factor PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis.

Kidokoro S, Maruyama K, Nakashima K, Imura Y, Narusaka Y, Shinwari ZK, Osakabe Y, Fujita Y, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Physiol. 2009 Dec;151(4):2046-57. doi: 10.1104/pp.109.147033. Epub 2009 Oct 16.


Thermodynamic and structural analysis of highly stabilized BPTIs by single and double mutations.

Islam MM, Sohya S, Noguchi K, Kidokoro S, Yohda M, Kuroda Y.

Proteins. 2009 Dec;77(4):962-70. doi: 10.1002/prot.22522.


DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis.

Tsutsui T, Kato W, Asada Y, Sako K, Sato T, Sonoda Y, Kidokoro S, Yamaguchi-Shinozaki K, Tamaoki M, Arakawa K, Ichikawa T, Nakazawa M, Seki M, Shinozaki K, Matsui M, Ikeda A, Yamaguchi J.

J Plant Res. 2009 Nov;122(6):633-43. doi: 10.1007/s10265-009-0252-6. Epub 2009 Jul 18.


Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy.

Nakashima K, Fujita Y, Kanamori N, Katagiri T, Umezawa T, Kidokoro S, Maruyama K, Yoshida T, Ishiyama K, Kobayashi M, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Cell Physiol. 2009 Jul;50(7):1345-63. doi: 10.1093/pcp/pcp083. Epub 2009 Jun 18.


Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A.

Maruyama K, Takeda M, Kidokoro S, Yamada K, Sakuma Y, Urano K, Fujita M, Yoshiwara K, Matsukura S, Morishita Y, Sasaki R, Suzuki H, Saito K, Shibata D, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Physiol. 2009 Aug;150(4):1972-80. doi: 10.1104/pp.109.135327. Epub 2009 Jun 5.


Synthesis of D-trigalacturonic acid methylglycoside and conformational comparison with its sulfur analogue.

Yamamoto K, Sato Y, Ishimori A, Miyairi K, Okuno T, Nemoto N, Shimizu H, Kidokoro S, Hashimoto M.

Biosci Biotechnol Biochem. 2008 Aug;72(8):2039-48. Epub 2008 Aug 7.


Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expression.

Qin F, Sakuma Y, Tran LS, Maruyama K, Kidokoro S, Fujita Y, Fujita M, Umezawa T, Sawano Y, Miyazono K, Tanokura M, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Cell. 2008 Jun;20(6):1693-707. doi: 10.1105/tpc.107.057380. Epub 2008 Jun 13.


Characterization of a sHsp of Schizosaccharomyces pombe, SpHsp15.8, and the implication of its functional mechanism by comparison with another sHsp, SpHsp16.0.

Sugino C, Hirose M, Tohda H, Yoshinari Y, Abe T, Giga-Hama Y, Iizuka R, Shimizu M, Kidokoro S, Ishii N, Yohda M.

Proteins. 2009 Jan;74(1):6-17. doi: 10.1002/prot.22132.


Crystallization and preliminary x-ray crystallographic analysis of galectin LEC-1 from Caenorhabditis elegans.

Itagaki T, Nishizaki S, Sekihashi K, Kobayashi H, Kidokoro S, Kezuka Y, Arata Y, Hirabayashi J, Kasai K, Nonaka T.

Protein Pept Lett. 2008;15(4):419-22.


Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system.

Yoshida T, Sakuma Y, Todaka D, Maruyama K, Qin F, Mizoi J, Kidokoro S, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K.

Biochem Biophys Res Commun. 2008 Apr 11;368(3):515-21. doi: 10.1016/j.bbrc.2008.01.134. Epub 2008 Feb 7.


Thermodynamic basis for the stabilities of three CutA1s from Pyrococcus horikoshii,Thermus thermophilus, and Oryza sativa, with unusually high denaturation temperatures.

Sawano M, Yamamoto H, Ogasahara K, Kidokoro S, Katoh S, Ohnuma T, Katoh E, Yokoyama S, Yutani K.

Biochemistry. 2008 Jan 15;47(2):721-30. Epub 2007 Dec 22.


Thermodynamic properties of BPTI variants with highly simplified amino acid sequences.

Kato A, Yamada M, Nakamura S, Kidokoro S, Kuroda Y.

J Mol Biol. 2007 Sep 21;372(3):737-46. Epub 2007 Jun 29.


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