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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

Hucka M, Bergmann FT, Dräger A, Hoops S, Keating SM, Novère NL, Myers CJ, Olivier BG, Sahle S, Schaff JC, Smith LP, Waltemath D, Wilkinson DJ.

J Integr Bioinform. 2018 Mar 9. pii: /j/jib.ahead-of-print/jib-2017-0081/jib-2017-0081.xml. doi: 10.1515/jib-2017-0081. [Epub ahead of print]


Opportunities and Challenges in Implementation of Multiparameter Single Cell Analysis Platforms for Clinical Translation.

Keating SM, Taylor DL, Plant AL, Litwack ED, Kuhn P, Greenspan EJ, Hartshorn CM, Sigman CC, Kelloff GJ, Chang DD, Friberg G, Lee JSH, Kuida K.

Clin Transl Sci. 2018 Mar 2. doi: 10.1111/cts.12536. [Epub ahead of print] Review.


Less Waste on Waist Measurements: Determination of Optimal Waist Circumference Measurement Site to Predict Visceral Adipose Tissue in Postmenopausal Women with Obesity.

Seimon RV, Wild-Taylor AL, Gibson AA, Harper C, McClintock S, Fernando HA, Hsu MSH, Luz FQD, Keating SE, Johnson NA, Grieve SM, Markovic TP, Caterson ID, Byrne NM, Sainsbury A.

Nutrients. 2018 Feb 20;10(2). pii: E239. doi: 10.3390/nu10020239.


Telementoring with project ECHO: a pilot study in Europe.

Ní Cheallaigh C, O'Leary A, Keating S, Singleton A, Heffernan S, Keenan E, Robson L, Sears J, Moloney J, Arora S, Bergin C, Norris S; Irish Hepatitis C Outcomes Research Network.

BMJ Innov. 2017 Jul;3(3):144-151. doi: 10.1136/bmjinnov-2016-000141. Epub 2017 Aug 24.


The effect of intracoelomic alfaxalone on righting reflex and response to Semmes-Weinstein monofilaments in the common garter snake (Thamnophis sirtalis).

Strahl-Heldreth D, Clark-Price S, Keating S, Graham L, Chinnadurai S.

Vet Anaesth Analg. 2017 Sep;44(5):1262.e4. doi: 10.1016/j.vaa.2017.09.008. Epub 2017 Nov 22. No abstract available.


Evaluation of total intravenous anesthesia with ketamine-xylazine combined with either midazolam or high or low dose propofol in horses: cardiopulmonary effects and recovery characteristics.

Sage A, Keating S, Lascola K, Graham L, Schaeffer D, Clark-Price S.

Vet Anaesth Analg. 2017 Sep;44(5):1262.e2-1262.e3. doi: 10.1016/j.vaa.2017.09.005. Epub 2017 Nov 22. No abstract available.


The effect of an intraoperative infusion of amino acids on body temperature, serum biochemistry, serum insulin, and recovery parameters in healthy dogs undergoing ovariohysterectomy.

Clark-Price S, Phillips H, Selmic L, Keating S, Reagan J.

Vet Anaesth Analg. 2017 Sep;44(5):1262.e1. doi: 10.1016/j.vaa.2017.09.002. Epub 2017 Nov 22. No abstract available.


Computational analysis of antibody dynamics identifies recent HIV-1 infection.

Seaton KE, Vandergrift NA, Deal AW, Rountree W, Bainbridge J, Grebe E, Anderson DA, Sawant S, Shen X, Yates NL, Denny TN, Liao HX, Haynes BF, Robb ML, Parkin N, Santos BR, Garrett N, Price MA, Naniche D, Duerr AC; CEPHIA group, Keating S, Hampton D, Facente S, Marson K, Welte A, Pilcher CD, Cohen MS, Tomaras GD.

JCI Insight. 2017 Dec 21;2(24). pii: 94355. doi: 10.1172/jci.insight.94355. [Epub ahead of print]


Extensive virologic and immunologic characterization in an HIV-infected individual following allogeneic stem cell transplant and analytic cessation of antiretroviral therapy: A case study.

Cummins NW, Rizza S, Litzow MR, Hua S, Lee GQ, Einkauf K, Chun TW, Rhame F, Baker JV, Busch MP, Chomont N, Dean PG, Fromentin R, Haase AT, Hampton D, Keating SM, Lada SM, Lee TH, Natesampillai S, Richman DD, Schacker TW, Wietgrefe S, Yu XG, Yao JD, Zeuli J, Lichterfeld M, Badley AD.

PLoS Med. 2017 Nov 28;14(11):e1002461. doi: 10.1371/journal.pmed.1002461. eCollection 2017 Nov.


Epigenetics in diabetic nephropathy, immunity and metabolism.

Keating ST, van Diepen JA, Riksen NP, El-Osta A.

Diabetologia. 2018 Jan;61(1):6-20. doi: 10.1007/s00125-017-4490-1. Epub 2017 Nov 11. Review.


Variability in C-reactive protein is associated with cognitive impairment in women living with and without HIV: a longitudinal study.

Rubin LH, Benning L, Keating SM, Norris PJ, Burke-Miller J, Savarese A, Kumanan KN, Awadalla S, Springer G, Anastos K, Young M, Milam J, Valcour VG, Weber KM, Maki PM.

J Neurovirol. 2018 Feb;24(1):41-51. doi: 10.1007/s13365-017-0590-4. Epub 2017 Oct 23.


Ethnicity, sex, and age are determinants of red blood cell storage and stress hemolysis: results of the REDS-III RBC-Omics study.

Kanias T, Lanteri MC, Page GP, Guo Y, Endres SM, Stone M, Keating S, Mast AE, Cable RG, Triulzi DJ, Kiss JE, Murphy EL, Kleinman S, Busch MP, Gladwin MT.

Blood Adv. 2017 Jun 27;1(15):1132-1141. doi: 10.1182/bloodadvances.2017004820.


Maternal Vascular Malperfusion and Adverse Perinatal Outcomes in Low-Risk Nulliparous Women.

Wright E, Audette MC, Ye XY, Keating S, Hoffman B, Lye SJ, Shah PS, Kingdom JC.

Obstet Gynecol. 2017 Nov;130(5):1112-1120. doi: 10.1097/AOG.0000000000002264.


Epigenetics and Trained Immunity.

van der Heijden CDCC, Noz MP, Joosten LAB, Netea MG, Riksen NP, Keating ST.

Antioxid Redox Signal. 2017 Nov 21. doi: 10.1089/ars.2017.7310. [Epub ahead of print]


Monocyte and macrophage immunometabolism in atherosclerosis.

Groh L, Keating ST, Joosten LAB, Netea MG, Riksen NP.

Semin Immunopathol. 2018 Feb;40(2):203-214. doi: 10.1007/s00281-017-0656-7. Epub 2017 Oct 2. Review.


Infection Staging and Incidence Surveillance Applications of High Dynamic Range Diagnostic Immuno-Assay Platforms.

Grebe E, Welte A, Hall J, Keating SM, Facente SN, Marson K, Martin JN, Little SJ, Price MA, Kallas EG, Busch MP, Pilcher CD, Murphy G.

J Acquir Immune Defic Syndr. 2017 Dec 15;76(5):547-555. doi: 10.1097/QAI.0000000000001537.


Anesthetic effects and body weight changes associated with ketamine-xylazine-lidocaine administered to CD-1 mice.

Dholakia U, Clark-Price SC, Keating SCJ, Stern AW.

PLoS One. 2017 Sep 14;12(9):e0184911. doi: 10.1371/journal.pone.0184911. eCollection 2017.


The effect of HIV infection and HCV viremia on inflammatory mediators and hepatic injury-The Women's Interagency HIV Study.

Keating SM, Dodge JL, Norris PJ, Heitman J, Gange SJ, French AL, Glesby MJ, Edlin BR, Latham PS, Villacres MC, Greenblatt RM, Peters MG; Women’s Interagency HIV Study.

PLoS One. 2017 Sep 13;12(9):e0181004. doi: 10.1371/journal.pone.0181004. eCollection 2017.


Effect of High-Intensity Interval Training on Fitness, Fat Mass and Cardiometabolic Biomarkers in Children with Obesity: A Randomised Controlled Trial.

Dias KA, Ingul CB, Tjønna AE, Keating SE, Gomersall SR, Follestad T, Hosseini MS, Hollekim-Strand SM, Ro TB, Haram M, Huuse EM, Davies PSW, Cain PA, Leong GM, Coombes JS.

Sports Med. 2018 Mar;48(3):733-746. doi: 10.1007/s40279-017-0777-0.


Low-Volume High-Intensity Interval Training Is Sufficient to Ameliorate the Severity of Metabolic Syndrome.

Ramos JS, Dalleck LC, Borrani F, Beetham KS, Wallen MP, Mallard AR, Clark B, Gomersall S, Keating SE, Fassett RG, Coombes JS.

Metab Syndr Relat Disord. 2017 Sep;15(7):319-328. doi: 10.1089/met.2017.0042. Epub 2017 Jun 22.


Phenotypic Assays for Characterizing Compound Effects on Induced Pluripotent Stem Cell-Derived Cardiac Spheroids.

Sirenko O, Hancock MK, Crittenden C, Hammer M, Keating S, Carlson CB, Chandy G.

Assay Drug Dev Technol. 2017 Aug/Sep;15(6):280-296. doi: 10.1089/adt.2017.792.


Impact of beta-blockers on cardiopulmonary exercise testing in patients with advanced liver disease.

Wallen MP, Hall A, Dias KA, Ramos JS, Keating SE, Woodward AJ, Skinner TL, Macdonald GA, Arena R, Coombes JS.

Aliment Pharmacol Ther. 2017 Oct;46(8):741-747. doi: 10.1111/apt.14265. Epub 2017 Aug 14.


High-intensity interval training and cardiac autonomic control in individuals with metabolic syndrome: A randomised trial.

Ramos JS, Dalleck LC, Borrani F, Beetham KS, Mielke GI, Dias KA, Wallen MP, Keating SE, Fassett RG, Coombes JS.

Int J Cardiol. 2017 Oct 15;245:245-252. doi: 10.1016/j.ijcard.2017.07.063. Epub 2017 Jul 21.


Ghrelin, Amylin, Gastric Inhibitory Peptide and Cognition in Middle-Aged HIV-Infected and Uninfected Women: The Women's Interagency HIV Study.

McFarlane SI, Mielke MM, Uglialoro A, Keating SM, Holman S, Minkoff H, Crystal HA, Gustafson DR.

J Neurol Neurophysiol. 2017 Feb;8(1). pii: 413. doi: 10.4172/2155-9562.1000413. Epub 2017 Feb 8.


Outcomes from a large 10 year hepatitis C treatment programme in people who inject drugs: No effect of recent or former injecting drug use on treatment adherence or therapeutic response.

Elsherif O, Bannan C, Keating S, McKiernan S, Bergin C, Norris S.

PLoS One. 2017 Jun 21;12(6):e0178398. doi: 10.1371/journal.pone.0178398. eCollection 2017.


The infection staging and profile of genotypic distribution and drug resistance mutation among the human immunodeficiency virus-1 infected blood donors from five Chinese blood centers, 2012-2014.

Zeng P, Liu Y, He M, Wang J, Keating S, Mao W, Huang M, Ma H, He W, Bi X, Liao D, Busch M, Ness P, Liu J, Shan H; NHLBI Recipient Epidemiology and Donor Evaluation Study-III program.

PLoS One. 2017 Jun 16;12(6):e0179328. doi: 10.1371/journal.pone.0179328. eCollection 2017.


Serum from dengue virus-infected patients with and without plasma leakage differentially affects endothelial cells barrier function in vitro.

Tramontini Gomes de Sousa Cardozo F, Baimukanova G, Lanteri MC, Keating SM, Moraes Ferreira F, Heitman J, Pannuti CS, Pati S, Romano CM, Cerdeira Sabino E.

PLoS One. 2017 Jun 6;12(6):e0178820. doi: 10.1371/journal.pone.0178820. eCollection 2017.


NAFLD in clinical practice: Can simple blood and anthropometric markers be used to detect change in liver fat measured by 1 H-MRS?

Keating SE, Parker HM, Hickman IJ, Gomersall SR, Wallen MP, Coombes JS, Macdonald GA, George J, Johnson NA.

Liver Int. 2017 Dec;37(12):1907-1915. doi: 10.1111/liv.13488. Epub 2017 Jun 29.


Assessment of agreement among diplomates of the American College of Veterinary Anesthesia and Analgesia for scoring the recovery of horses from anesthesia by use of subjective grading scales and development of a system for evaluation of the recovery of horses from anesthesia by use of accelerometry.

Clark-Price SC, Lascola KM, Carter JE, da Cunha AF, Donaldson LL, Doherty TJ, Martin-Flores M, Hofmeister EH, Keating SCJ, Mama KR, Mason DE, Posner LP, Sano H, Seddighi R, Shih AC, Weil AB, Schaeffer DJ.

Am J Vet Res. 2017 Jun;78(6):668-676. doi: 10.2460/ajvr.78.6.668.


A systematic review and meta-analysis of interval training versus moderate-intensity continuous training on body adiposity.

Keating SE, Johnson NA, Mielke GI, Coombes JS.

Obes Rev. 2017 Aug;18(8):943-964. doi: 10.1111/obr.12536. Epub 2017 May 17. Review.


HIV Antibody Level as a Marker of HIV Persistence and Low-Level Viral Replication.

Keating SM, Pilcher CD, Jain V, Lebedeva M, Hampton D, Abdel-Mohsen M, Deng X, Murphy G, Welte A, Facente SN, Hecht F, Deeks SG, Pillai SK, Busch MP.

J Infect Dis. 2017 Jul 1;216(1):72-81. doi: 10.1093/infdis/jix225.


Planarians SET New Paths for Innate Immune Memory.

Keating ST, Riksen NP, Netea MG.

EBioMedicine. 2017 Jun;20:7-8. doi: 10.1016/j.ebiom.2017.05.007. Epub 2017 May 5. No abstract available.


Differentiating pulmonary transfusion reactions using recipient and transfusion factors.

Roubinian NH, Looney MR, Keating S, Kor DJ, Lowell CA, Gajic O, Hubmayr R, Gropper M, Koenigsberg M, Wilson GA, A Matthay M, Toy P, Murphy EL; TRALI Study Group.

Transfusion. 2017 Jul;57(7):1684-1690. doi: 10.1111/trf.14118. Epub 2017 May 3.


Impact of Allogeneic Hematopoietic Stem Cell Transplantation on the HIV Reservoir and Immune Response in 3 HIV-Infected Individuals.

Koelsch KK, Rasmussen TA, Hey-Nguyen WJ, Pearson C, Xu Y, Bailey M, Marks KH, Sasson SC, Taylor MS, Tantau R, Obeid S, Milner B, Morrissey O, Pinto AN, Suzuki K, Busch MP, Keating SM, Kaiser P, Yukl S, Wong JK, Hiener BM, Palmer S, Zaunders J, Post JJ, Chan DJ, Avery S, Milliken ST, Kelleher AD, Lewin SR, Cooper DA.

J Acquir Immune Defic Syndr. 2017 Jul 1;75(3):328-337. doi: 10.1097/QAI.0000000000001381.


The association of maternal lymphatic markers and critical congenital heart defects in the fetus-A population based case-control study.

Steurer MA, Norton ME, Baer RJ, Shaw GM, Keating S, Moon-Grady AJ, Chambers CD, Jelliffe-Pawlowski LL.

Am J Med Genet A. 2017 May;173(5):1231-1236. doi: 10.1002/ajmg.a.38152. Epub 2017 Mar 21.


Plasminogen Activator Inhibitor-1 Predicts Negative Alterations in Whole-Body Insulin Sensitivity in Chronic HIV Infection.

Wirunsawanya K, Belyea L, Shikuma C, Watanabe RM, Kohorn L, Shiramizu B, Mitchell BI, Souza SA, Keating SM, Norris PJ, Ndhlovu LC, Chow D.

AIDS Res Hum Retroviruses. 2017 Jul;33(7):723-727. doi: 10.1089/AID.2016.0292. Epub 2017 Apr 18.


Comparative adherence to diabetes drugs: An analysis of electronic health records and claims data.

Flory J, Gerhard T, Stempniewicz N, Keating S, Rowan CG.

Diabetes Obes Metab. 2017 Aug;19(8):1184-1187. doi: 10.1111/dom.12931. Epub 2017 Apr 10.


Cytokines and microbicidal molecules regulated by IL-32 in THP-1-derived human macrophages infected with New World Leishmania species.

Dos Santos JC, Heinhuis B, Gomes RS, Damen MS, Real F, Mortara RA, Keating ST, Dinarello CA, Joosten LA, Ribeiro-Dias F.

PLoS Negl Trop Dis. 2017 Feb 27;11(2):e0005413. doi: 10.1371/journal.pntd.0005413. eCollection 2017 Feb.


Comparison of cross-sectional HIV incidence assay results from dried blood spots and plasma.

Schlusser KE, Pilcher C, Kallas EG, Santos BR, Deeks SG, Facente S, Keating SM, Busch MP, Murphy G, Welte A, Quinn T, Eshleman SH, Laeyendecker O.

PLoS One. 2017 Feb 23;12(2):e0172283. doi: 10.1371/journal.pone.0172283. eCollection 2017.


Exercise and ectopic fat in type 2 diabetes: A systematic review and meta-analysis.

Sabag A, Way KL, Keating SE, Sultana RN, O'Connor HT, Baker MK, Chuter VH, George J, Johnson NA.

Diabetes Metab. 2017 Jun;43(3):195-210. doi: 10.1016/j.diabet.2016.12.006. Epub 2017 Feb 2. Review.


Lessons Learned: Transfer of the High-Definition Circulating Tumor Cell Assay Platform to Development as a Commercialized Clinical Assay Platform.

Kuhn P, Keating SM, Baxter GT, Thomas K, Kolatkar A, Sigman CC.

Clin Pharmacol Ther. 2017 Nov;102(5):777-785. doi: 10.1002/cpt.645. Epub 2017 Mar 22. Review.


Brief Report: Low-Dose Hydrocortisone Has Acute Enhancing Effects on Verbal Learning in HIV-Infected Men.

Rubin LH, Phan KL, Keating SM, Weber KM, Maki PM.

J Acquir Immune Defic Syndr. 2017 Jul 1;75(3):e65-e70. doi: 10.1097/QAI.0000000000001303.


Cytokines Elevated in HIV Elite Controllers Reduce HIV Replication In Vitro and Modulate HIV Restriction Factor Expression.

Jacobs ES, Keating SM, Abdel-Mohsen M, Gibb SL, Heitman JW, Inglis HC, Martin JN, Zhang J, Kaidarova Z, Deng X, Wu S, Anastos K, Crystal H, Villacres MC, Young M, Greenblatt RM, Landay AL, Gange SJ, Deeks SG, Golub ET, Pillai SK, Norris PJ.

J Virol. 2017 Feb 28;91(6). pii: e02051-16. doi: 10.1128/JVI.02051-16. Print 2017 Mar 15.


Moving towards a reliable HIV incidence test - current status, resources available, future directions and challenges ahead.

Murphy G, Pilcher CD, Keating SM, Kassanjee R, Facente SN, Welte A, Grebe E, Marson K, Busch MP, Dailey P, Parkin N, Osborn J, Ongarello S, Marsh K, Garcia-Calleja JM; Consortium for the Evaluation and Performance of HIV Incidence Assays (CEPHIA).

Epidemiol Infect. 2017 Apr;145(5):925-941. doi: 10.1017/S0950268816002910. Epub 2016 Dec 22. Review.


A novel anti-viral role for STAT3 in IFN-α signalling responses.

Mahony R, Gargan S, Roberts KL, Bourke N, Keating SE, Bowie AG, O'Farrelly C, Stevenson NJ.

Cell Mol Life Sci. 2017 May;74(9):1755-1764. doi: 10.1007/s00018-016-2435-3. Epub 2016 Dec 17.


Creating an integrated care model for childhood obesity: a randomized pilot study utilizing telehealth in a community primary care setting.

Fleischman A, Hourigan SE, Lyon HN, Landry MG, Reynolds J, Steltz SK, Robinson L, Keating S, Feldman HA, Antonelli RC, Ludwig DS, Ebbeling CB.

Clin Obes. 2016 Dec;6(6):380-388. doi: 10.1111/cob.12166. Epub 2016 Nov 14.


Brief Report: Association of Adipokines With Bone Mineral Density in HIV-Infected and HIV-Uninfected Women.

Sharma A, Ma Y, Scherzer R, Wheeler AL, Cohen M, Gustafson DR, Keating SM, Yin MT, Tien PC.

J Acquir Immune Defic Syndr. 2016 Dec 1;73(4):433-437.


Magnitude and Quality of Cytokine and Chemokine Storm during Acute Infection Distinguish Nonprogressive and Progressive Simian Immunodeficiency Virus Infections of Nonhuman Primates.

Keating SM, Heitman JW, Wu S, Deng X, Stacey AR, Zahn RC, de la Rosa M, Finstad SL, Lifson JD, Piatak M Jr, Gauduin MC, Kessler BM, Ternette N, Carville A, Johnson RP, Desrosiers RC, Letvin NL, Borrow P, Norris PJ, Schmitz JE.

J Virol. 2016 Oct 28;90(22):10339-10350. Print 2016 Nov 15.


High 25-hydroxyvitamin D is associated with unexpectedly high plasma inflammatory markers in HIV patients on antiretroviral therapy.

Gangcuangco LM, Kohorn LB, Chow DC, Keating SM, Norris PJ, Nagamine LS, Ndhlovu LC, Souza SA, Kallianpur KJ, Shikuma CM.

Medicine (Baltimore). 2016 Oct;95(43):e5270.


Objectively Quantified Physical Activity and Sedentary Behavior in Predicting Visceral Adiposity and Liver Fat.

Keating SE, Parker HM, Pavey TG, Baker MK, Caterson ID, George J, Johnson NA.

J Obes. 2016;2016:2719014. Epub 2016 Sep 29.

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