Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 87

1.

HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivo.

Howard JM, Lin H, Wallace AJ, Kim G, Draper JM, Haeussler M, Katzman S, Toloue M, Liu Y, Sanford JR.

Genome Res. 2018 Apr 12. doi: 10.1101/gr.229062.117. [Epub ahead of print]

PMID:
29650551
2.

Anesthesia Case of the Month.

Katzman SA, Perez-Noguez M, Pypendop BH, Alex CE, Affolter VK.

J Am Vet Med Assoc. 2018 Feb 1;252(3):286-288. doi: 10.2460/javma.252.3.286. No abstract available.

PMID:
29346057
3.

Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay.

Lucas BA, Lavi E, Shiue L, Cho H, Katzman S, Miyoshi K, Siomi MC, Carmel L, Ares M Jr., Maquat LE.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):968-973. doi: 10.1073/pnas.1715531115. Epub 2018 Jan 16.

PMID:
29339519
4.

CRISPR/Cas-based screening of long non-coding RNAs (lncRNAs) in macrophages with an NF-κB reporter.

Covarrubias S, Robinson EK, Shapleigh B, Vollmers A, Katzman S, Hanley N, Fong N, McManus MT, Carpenter S.

J Biol Chem. 2017 Dec 22;292(51):20911-20920. doi: 10.1074/jbc.M117.799155. Epub 2017 Oct 19.

5.

Autogenous cross-regulation of Quaking mRNA processing and translation balances Quaking functions in splicing and translation.

Fagg WS, Liu N, Fair JH, Shiue L, Katzman S, Donohue JP, Ares M Jr.

Genes Dev. 2017 Sep 15;31(18):1894-1909. doi: 10.1101/gad.302059.117. Epub 2017 Oct 11.

6.

18 F-sodium fluoride positron emission tomography of the equine distal limb: Exploratory study in three horses.

Spriet M, Espinosa P, Kyme AZ, Phillips KL, Katzman SA, Galuppo LD, Stepanov P, Beylin D.

Equine Vet J. 2018 Jan;50(1):125-132. doi: 10.1111/evj.12719. Epub 2017 Aug 18.

PMID:
28707737
7.

The Unexpected Hand Patient: Invited Commentary.

Katzman SR.

Eplasty. 2017 May 5;17:e17. eCollection 2017. No abstract available.

8.

Preferential expression of scores of functionally and evolutionarily diverse DNA and RNA-binding proteins during Oxytricha trifallax macronuclear development.

Neeb ZT, Hogan DJ, Katzman S, Zahler AM.

PLoS One. 2017 Feb 16;12(2):e0170870. doi: 10.1371/journal.pone.0170870. eCollection 2017.

9.

A novel ultrasonographic assisted technique for desmotomy of the palmar/plantar annular ligament in horses.

Espinosa P, Nieto JE, Snyder JR, Galuppo LD, Katzman SA.

Vet Surg. 2017 Jul;46(5):611-620. doi: 10.1111/vsu.12630. Epub 2017 Feb 10.

PMID:
28186643
10.

Modulation of nonsense mediated decay by rapamycin.

Martinez-Nunez RT, Wallace A, Coyne D, Jansson L, Rush M, Ennajdaoui H, Katzman S, Bailey J, Deinhardt K, Sanchez-Elsner T, Sanford JR.

Nucleic Acids Res. 2017 Apr 7;45(6):3448-3459. doi: 10.1093/nar/gkw1109.

11.

POSITRON EMISSION TOMOGRAPHY OF THE EQUINE DISTAL LIMB: EXPLORATORY STUDY.

Spriet M, Espinosa P, Kyme AZ, Stepanov P, Zavarzin V, Schaeffer S, Katzman SA, Galuppo LD, Beylin D.

Vet Radiol Ultrasound. 2016 Nov;57(6):630-638. doi: 10.1111/vru.12430. Epub 2016 Oct 4.

PMID:
27699910
12.

Use of a laparoscopic specimen retrieval pouch to facilitate removal of intact or fragmented cystic calculi from standing sedated horses: 8 cases (2012-2015).

Katzman SA, Vaughan B, Nieto JE, Galuppo LD.

J Am Vet Med Assoc. 2016 Aug 1;249(3):304-10. doi: 10.2460/javma.249.3.304.

PMID:
27439348
13.

TBR1 regulates autism risk genes in the developing neocortex.

Notwell JH, Heavner WE, Darbandi SF, Katzman S, McKenna WL, Ortiz-Londono CF, Tastad D, Eckler MJ, Rubenstein JL, McConnell SK, Chen B, Bejerano G.

Genome Res. 2016 Aug;26(8):1013-22. doi: 10.1101/gr.203612.115. Epub 2016 Jun 20.

14.

IGF2BP3 Modulates the Interaction of Invasion-Associated Transcripts with RISC.

Ennajdaoui H, Howard JM, Sterne-Weiler T, Jahanbani F, Coyne DJ, Uren PJ, Dargyte M, Katzman S, Draper JM, Wallace A, Cazarez O, Burns SC, Qiao M, Hinck L, Smith AD, Toloue MM, Blencowe BJ, Penalva LO, Sanford JR.

Cell Rep. 2016 May 31;15(9):1876-83. doi: 10.1016/j.celrep.2016.04.083. Epub 2016 May 19.

15.

Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression.

de Bruin RG, Shiue L, Prins J, de Boer HC, Singh A, Fagg WS, van Gils JM, Duijs JM, Katzman S, Kraaijeveld AO, Böhringer S, Leung WY, Kielbasa SM, Donahue JP, van der Zande PH, Sijbom R, van Alem CM, Bot I, van Kooten C, Jukema JW, Van Esch H, Rabelink TJ, Kazan H, Biessen EA, Ares M Jr, van Zonneveld AJ, van der Veer EP.

Nat Commun. 2016 Mar 31;7:10846. doi: 10.1038/ncomms10846.

16.

RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation.

Palanichamy JK, Tran TM, Howard JM, Contreras JR, Fernando TR, Sterne-Weiler T, Katzman S, Toloue M, Yan W, Basso G, Pigazzi M, Sanford JR, Rao DS.

J Clin Invest. 2016 Apr 1;126(4):1495-511. doi: 10.1172/JCI80046. Epub 2016 Mar 14.

17.

FRACTURE OF THE CENTRAL TARSAL BONE IN NONRACEHORSES: FOUR CASES.

Knuchell JA, Spriet M, Galuppo LD, Katzman SA.

Vet Radiol Ultrasound. 2016 Jul;57(4):403-9. doi: 10.1111/vru.12352. Epub 2016 Mar 1.

PMID:
26929208
18.

ULTRASOUND-GUIDED INJECTIONS IN HORSES WITH CRANIOVENTRAL DISTENSION OF THE COXOFEMORAL JOINT CAPSULE: FEASIBILITY FOR A CRANIOVENTRAL APPROACH.

Whitcomb MB, Vaughan B, Katzman S, Hersman J.

Vet Radiol Ultrasound. 2016 Mar-Apr;57(2):199-206. doi: 10.1111/vru.12323. Epub 2016 Jan 8.

PMID:
26748616
19.

Blood and Cerebrospinal Fluid α-Tocopherol and Selenium Concentrations in Neonatal Foals with Neuroaxonal Dystrophy.

Finno CJ, Estell KE, Katzman S, Winfield L, Rendahl A, Textor J, Bannasch DL, Puschner B.

J Vet Intern Med. 2015 Nov-Dec;29(6):1667-75. doi: 10.1111/jvim.13618. Epub 2015 Sep 22.

20.

Mitochondrial DNA Heteroplasmy Associations With Neurosensory and Mobility Function in Elderly Adults.

Tranah GJ, Yaffe K, Katzman SM, Lam ET, Pawlikowska L, Kwok PY, Schork NJ, Manini TM, Kritchevsky S, Thomas F, Newman AB, Harris TB, Coleman AL, Gorin MB, Helzner EP, Rowbotham MC, Browner WS, Cummings SR; Health, Aging and Body Composition Study.

J Gerontol A Biol Sci Med Sci. 2015 Nov;70(11):1418-24. doi: 10.1093/gerona/glv097. Epub 2015 Aug 31.

21.

Mutual regulation between Satb2 and Fezf2 promotes subcerebral projection neuron identity in the developing cerebral cortex.

McKenna WL, Ortiz-Londono CF, Mathew TK, Hoang K, Katzman S, Chen B.

Proc Natl Acad Sci U S A. 2015 Sep 15;112(37):11702-7. doi: 10.1073/pnas.1504144112. Epub 2015 Aug 31.

22.

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

Cancer Genome Atlas Research Network, Brat DJ, Verhaak RG, Aldape KD, Yung WK, Salama SR, Cooper LA, Rheinbay E, Miller CR, Vitucci M, Morozova O, Robertson AG, Noushmehr H, Laird PW, Cherniack AD, Akbani R, Huse JT, Ciriello G, Poisson LM, Barnholtz-Sloan JS, Berger MS, Brennan C, Colen RR, Colman H, Flanders AE, Giannini C, Grifford M, Iavarone A, Jain R, Joseph I, Kim J, Kasaian K, Mikkelsen T, Murray BA, O'Neill BP, Pachter L, Parsons DW, Sougnez C, Sulman EP, Vandenberg SR, Van Meir EG, von Deimling A, Zhang H, Crain D, Lau K, Mallery D, Morris S, Paulauskis J, Penny R, Shelton T, Sherman M, Yena P, Black A, Bowen J, Dicostanzo K, Gastier-Foster J, Leraas KM, Lichtenberg TM, Pierson CR, Ramirez NC, Taylor C, Weaver S, Wise L, Zmuda E, Davidsen T, Demchok JA, Eley G, Ferguson ML, Hutter CM, Mills Shaw KR, Ozenberger BA, Sheth M, Sofia HJ, Tarnuzzer R, Wang Z, Yang L, Zenklusen JC, Ayala B, Baboud J, Chudamani S, Jensen MA, Liu J, Pihl T, Raman R, Wan Y, Wu Y, Ally A, Auman JT, Balasundaram M, Balu S, Baylin SB, Beroukhim R, Bootwalla MS, Bowlby R, Bristow CA, Brooks D, Butterfield Y, Carlsen R, Carter S, Chin L, Chu A, Chuah E, Cibulskis K, Clarke A, Coetzee SG, Dhalla N, Fennell T, Fisher S, Gabriel S, Getz G, Gibbs R, Guin R, Hadjipanayis A, Hayes DN, Hinoue T, Hoadley K, Holt RA, Hoyle AP, Jefferys SR, Jones S, Jones CD, Kucherlapati R, Lai PH, Lander E, Lee S, Lichtenstein L, Ma Y, Maglinte DT, Mahadeshwar HS, Marra MA, Mayo M, Meng S, Meyerson ML, Mieczkowski PA, Moore RA, Mose LE, Mungall AJ, Pantazi A, Parfenov M, Park PJ, Parker JS, Perou CM, Protopopov A, Ren X, Roach J, Sabedot TS, Schein J, Schumacher SE, Seidman JG, Seth S, Shen H, Simons JV, Sipahimalani P, Soloway MG, Song X, Sun H, Tabak B, Tam A, Tan D, Tang J, Thiessen N, Triche T Jr, Van Den Berg DJ, Veluvolu U, Waring S, Weisenberger DJ, Wilkerson MD, Wong T, Wu J, Xi L, Xu AW, Yang L, Zack TI, Zhang J, Aksoy BA, Arachchi H, Benz C, Bernard B, Carlin D, Cho J, DiCara D, Frazer S, Fuller GN, Gao J, Gehlenborg N, Haussler D, Heiman DI, Iype L, Jacobsen A, Ju Z, Katzman S, Kim H, Knijnenburg T, Kreisberg RB, Lawrence MS, Lee W, Leinonen K, Lin P, Ling S, Liu W, Liu Y, Liu Y, Lu Y, Mills G, Ng S, Noble MS, Paull E, Rao A, Reynolds S, Saksena G, Sanborn Z, Sander C, Schultz N, Senbabaoglu Y, Shen R, Shmulevich I, Sinha R, Stuart J, Sumer SO, Sun Y, Tasman N, Taylor BS, Voet D, Weinhold N, Weinstein JN, Yang D, Yoshihara K, Zheng S, Zhang W, Zou L, Abel T, Sadeghi S, Cohen ML, Eschbacher J, Hattab EM, Raghunathan A, Schniederjan MJ, Aziz D, Barnett G, Barrett W, Bigner DD, Boice L, Brewer C, Calatozzolo C, Campos B, Carlotti CG Jr, Chan TA, Cuppini L, Curley E, Cuzzubbo S, Devine K, DiMeco F, Duell R, Elder JB, Fehrenbach A, Finocchiaro G, Friedman W, Fulop J, Gardner J, Hermes B, Herold-Mende C, Jungk C, Kendler A, Lehman NL, Lipp E, Liu O, Mandt R, McGraw M, Mclendon R, McPherson C, Neder L, Nguyen P, Noss A, Nunziata R, Ostrom QT, Palmer C, Perin A, Pollo B, Potapov A, Potapova O, Rathmell WK, Rotin D, Scarpace L, Schilero C, Senecal K, Shimmel K, Shurkhay V, Sifri S, Singh R, Sloan AE, Smolenski K, Staugaitis SM, Steele R, Thorne L, Tirapelli DP, Unterberg A, Vallurupalli M, Wang Y, Warnick R, Williams F, Wolinsky Y, Bell S, Rosenberg M, Stewart C, Huang F, Grimsby JL, Radenbaugh AJ, Zhang J.

N Engl J Med. 2015 Jun 25;372(26):2481-98. doi: 10.1056/NEJMoa1402121. Epub 2015 Jun 10.

23.

Coordinated tissue-specific regulation of adjacent alternative 3' splice sites in C. elegans.

Ragle JM, Katzman S, Akers TF, Barberan-Soler S, Zahler AM.

Genome Res. 2015 Jul;25(7):982-94. doi: 10.1101/gr.186783.114. Epub 2015 Apr 28.

24.

Mitochondrial DNA Sequence Variation Associated With Peripheral Nerve Function in the Elderly.

Katzman SM, Strotmeyer ES, Nalls MA, Zhao Y, Mooney S, Schork N, Newman AB, Harris TB, Yaffe K, Cummings SR, Liu Y, Tranah GJ; Health, Aging, and Body Composition Study.

J Gerontol A Biol Sci Med Sci. 2015 Nov;70(11):1400-8. doi: 10.1093/gerona/glu175. Epub 2014 Nov 13.

25.

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.

Jacobs FM, Greenberg D, Nguyen N, Haeussler M, Ewing AD, Katzman S, Paten B, Salama SR, Haussler D.

Nature. 2014 Dec 11;516(7530):242-5. doi: 10.1038/nature13760. Epub 2014 Sep 28.

26.

Confirmation of the cellular targets of benomyl and rapamycin using next-generation sequencing of resistant mutants in S. cerevisiae.

Wride DA, Pourmand N, Bray WM, Kosarchuk JJ, Nisam SC, Quan TK, Berkeley RF, Katzman S, Hartzog GA, Dobkin CE, Scott Lokey R.

Mol Biosyst. 2014 Dec;10(12):3179-87. doi: 10.1039/c4mb00146j.

27.

Multiple conserved regulatory domains promote Fezf2 expression in the developing cerebral cortex.

Eckler MJ, Larkin KA, McKenna WL, Katzman S, Guo C, Roque R, Visel A, Rubenstein JL, Chen B.

Neural Dev. 2014 Mar 12;9:6. doi: 10.1186/1749-8104-9-6.

28.

Mitochondrial DNA sequence associations with dementia and amyloid-β in elderly African Americans.

Tranah GJ, Yokoyama JS, Katzman SM, Nalls MA, Newman AB, Harris TB, Cesari M, Manini TM, Schork NJ, Cummings SR, Liu Y, Yaffe K; Health, Aging and Body Composition Study.

Neurobiol Aging. 2014 Feb;35(2):442.e1-8. doi: 10.1016/j.neurobiolaging.2013.05.023. Epub 2013 Oct 18.

29.

IL-4 attenuates Th1-associated chemokine expression and Th1 trafficking to inflamed tissues and limits pathogen clearance.

Lazarski CA, Ford J, Katzman SD, Rosenberg AF, Fowell DJ.

PLoS One. 2013 Aug 26;8(8):e71949. doi: 10.1371/journal.pone.0071949. eCollection 2013.

30.

Double minute chromosomes in glioblastoma multiforme are revealed by precise reconstruction of oncogenic amplicons.

Sanborn JZ, Salama SR, Grifford M, Brennan CW, Mikkelsen T, Jhanwar S, Katzman S, Chin L, Haussler D.

Cancer Res. 2013 Oct 1;73(19):6036-45. doi: 10.1158/0008-5472.CAN-13-0186. Epub 2013 Aug 12.

31.

Competition between pre-mRNAs for the splicing machinery drives global regulation of splicing.

Munding EM, Shiue L, Katzman S, Donohue JP, Ares M Jr.

Mol Cell. 2013 Aug 8;51(3):338-48. doi: 10.1016/j.molcel.2013.06.012. Epub 2013 Jul 25.

32.

Frac-seq reveals isoform-specific recruitment to polyribosomes.

Sterne-Weiler T, Martinez-Nunez RT, Howard JM, Cvitovik I, Katzman S, Tariq MA, Pourmand N, Sanford JR.

Genome Res. 2013 Oct;23(10):1615-23. doi: 10.1101/gr.148585.112. Epub 2013 Jun 19.

33.

Nuclear factor one B regulates neural stem cell differentiation and axonal projection of corticofugal neurons.

Betancourt J, Katzman S, Chen B.

J Comp Neurol. 2014 Jan 1;522(1):6-35. doi: 10.1002/cne.23373.

34.

Foxg1 coordinates the switch from nonradially to radially migrating glutamatergic subtypes in the neocortex through spatiotemporal repression.

Kumamoto T, Toma K, Gunadi, McKenna WL, Kasukawa T, Katzman S, Chen B, Hanashima C.

Cell Rep. 2013 Mar 28;3(3):931-45. doi: 10.1016/j.celrep.2013.02.023. Epub 2013 Mar 21.

35.

Becoming patient: a path to effective participation with chronic terminal cancer.

Katzman S.

Health Care Women Int. 2013;34(1):68-85. doi: 10.1080/07399332.2012.695830.

PMID:
23216097
36.

Compromised mitochondrial fatty acid synthesis in transgenic mice results in defective protein lipoylation and energy disequilibrium.

Smith S, Witkowski A, Moghul A, Yoshinaga Y, Nefedov M, de Jong P, Feng D, Fong L, Tu Y, Hu Y, Young SG, Pham T, Cheung C, Katzman SM, Brand MD, Quinlan CL, Fens M, Kuypers F, Misquitta S, Griffey SM, Tran S, Gharib A, Knudsen J, Hannibal-Bach HK, Wang G, Larkin S, Thweatt J, Pasta S.

PLoS One. 2012;7(10):e47196. doi: 10.1371/journal.pone.0047196. Epub 2012 Oct 15.

37.

Deletion and anergy of polyclonal B cells specific for ubiquitous membrane-bound self-antigen.

Taylor JJ, Martinez RJ, Titcombe PJ, Barsness LO, Thomas SR, Zhang N, Katzman SD, Jenkins MK, Mueller DL.

J Exp Med. 2012 Oct 22;209(11):2065-77. doi: 10.1084/jem.20112272. Epub 2012 Oct 15.

38.

Gene isoform specificity through enhancer-associated antisense transcription.

Onodera CS, Underwood JG, Katzman S, Jacobs F, Greenberg D, Salama SR, Haussler D.

PLoS One. 2012;7(8):e43511. doi: 10.1371/journal.pone.0043511. Epub 2012 Aug 24.

39.

Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus.

Zahler AM, Neeb ZT, Lin A, Katzman S.

PLoS One. 2012;7(8):e42371. doi: 10.1371/journal.pone.0042371. Epub 2012 Aug 10.

40.

Mitochondrial DNA sequence variation associated with dementia and cognitive function in the elderly.

Tranah GJ, Nalls MA, Katzman SM, Yokoyama JS, Lam ET, Zhao Y, Mooney S, Thomas F, Newman AB, Liu Y, Cummings SR, Harris TB, Yaffe K.

J Alzheimers Dis. 2012;32(2):357-72. doi: 10.3233/JAD-2012-120466.

41.

Spontaneous autoimmunity in the absence of IL-2 is driven by uncontrolled dendritic cells.

Isakson SH, Katzman SD, Hoyer KK.

J Immunol. 2012 Aug 15;189(4):1585-93. doi: 10.4049/jimmunol.1200342. Epub 2012 Jul 9.

42.

IL-13-producing Th1 and Th17 cells characterize adaptive responses to both self and foreign antigens.

Gallo E, Katzman S, Villarino AV.

Eur J Immunol. 2012 Sep;42(9):2322-8. doi: 10.1002/eji.201142227. Epub 2012 Jul 27.

43.

Mitochondrial DNA sequence variation is associated with free-living activity energy expenditure in the elderly.

Tranah GJ, Lam ET, Katzman SM, Nalls MA, Zhao Y, Evans DS, Yokoyama JS, Pawlikowska L, Kwok PY, Mooney S, Kritchevsky S, Goodpaster BH, Newman AB, Harris TB, Manini TM, Cummings SR; Health, Aging and Body Composition Study.

Biochim Biophys Acta. 2012 Sep;1817(9):1691-700. Epub 2012 May 31.

44.

Use of zoledronate for treatment of a bone fragility disorder in horses.

Katzman SA, Nieto JE, Arens AM, MacDonald MH, Puchalski SM, Galuppo LD, Snyder JR, Maher O, Bell RJ.

J Am Vet Med Assoc. 2012 Jun 1;240(11):1323-8. doi: 10.2460/javma.240.11.1323.

PMID:
22607600
45.

Human tRNA genes function as chromatin insulators.

Raab JR, Chiu J, Zhu J, Katzman S, Kurukuti S, Wade PA, Haussler D, Kamakaka RT.

EMBO J. 2012 Jan 18;31(2):330-50. doi: 10.1038/emboj.2011.406. Epub 2011 Nov 15.

46.

Opposing functions of IL-2 and IL-7 in the regulation of immune responses.

Katzman SD, Hoyer KK, Dooms H, Gratz IK, Rosenblum MD, Paw JS, Isakson SH, Abbas AK.

Cytokine. 2011 Oct;56(1):116-21. doi: 10.1016/j.cyto.2011.07.005. Epub 2011 Jul 31. Review.

47.

Ongoing GC-biased evolution is widespread in the human genome and enriched near recombination hot spots.

Katzman S, Capra JA, Haussler D, Pollard KS.

Genome Biol Evol. 2011;3:614-26. doi: 10.1093/gbe/evr058. Epub 2011 Jun 21.

48.

Differential requirements for Th1 and Th17 responses to a systemic self-antigen.

Katzman SD, Gallo E, Hoyer KK, Abbas AK.

J Immunol. 2011 Apr 15;186(8):4668-73. doi: 10.4049/jimmunol.1003786. Epub 2011 Mar 14.

49.

Posttranscriptional silencing of effector cytokine mRNA underlies the anergic phenotype of self-reactive T cells.

Villarino AV, Katzman SD, Gallo E, Miller O, Jiang S, McManus MT, Abbas AK.

Immunity. 2011 Jan 28;34(1):50-60. doi: 10.1016/j.immuni.2010.12.014. Epub 2011 Jan 13.

50.

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.

Underwood JG, Uzilov AV, Katzman S, Onodera CS, Mainzer JE, Mathews DH, Lowe TM, Salama SR, Haussler D.

Nat Methods. 2010 Dec;7(12):995-1001. doi: 10.1038/nmeth.1529. Epub 2010 Nov 7.

Supplemental Content

Loading ...
Support Center