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Suppression of reactive oxygen species generation in heart mitochondria from anoxic turtles: the role of complex I S-nitrosation.

Bundgaard A, James AM, Joyce W, Murphy MP, Fago A.

J Exp Biol. 2018 Mar 1. pii: jeb.174391. doi: 10.1242/jeb.174391. [Epub ahead of print]


Structural basis of ribosomal peptide macrocyclization in plants.

Haywood J, Schmidberger JW, James AM, Nonis SG, Sukhoverkov KV, Elias M, Bond CS, Mylne JS.

Elife. 2018 Jan 31;7. pii: e32955. doi: 10.7554/eLife.32955.


The anti-SLAMF7 antibody elotuzumab mediates NK cell activation through both CD16-dependent and -independent mechanisms.

Pazina T, James AM, MacFarlane AW 4th, Bezman NA, Henning KA, Bee C, Graziano RF, Robbins MD, Cohen AD, Campbell KS.

Oncoimmunology. 2017 Jun 16;6(9):e1339853. doi: 10.1080/2162402X.2017.1339853. eCollection 2017.


Genetic variability of cloned Cytauxzoon felis ribosomal RNA ITS1 and ITS2 genomic regions from domestic cats with varied clinical outcomes from five states.

Pollard DA, Reichard MV, Cohn LA, James AM, Holman PJ.

Vet Parasitol. 2017 Sep 15;244:136-143. doi: 10.1016/j.vetpar.2017.08.002. Epub 2017 Aug 3.


MitoNeoD: A Mitochondria-Targeted Superoxide Probe.

Shchepinova MM, Cairns AG, Prime TA, Logan A, James AM, Hall AR, Vidoni S, Arndt S, Caldwell ST, Prag HA, Pell VR, Krieg T, Mulvey JF, Yadav P, Cobley JN, Bright TP, Senn HM, Anderson RF, Murphy MP, Hartley RC.

Cell Chem Biol. 2017 Oct 19;24(10):1285-1298.e12. doi: 10.1016/j.chembiol.2017.08.003. Epub 2017 Sep 7.


Identification and quantification of protein S-nitrosation by nitrite in the mouse heart during ischemia.

Chouchani ET, James AM, Methner C, Pell VR, Prime TA, Erickson BK, Forkink M, Lau GY, Bright TP, Menger KE, Fearnley IM, Krieg T, Murphy MP.

J Biol Chem. 2017 Sep 1;292(35):14486-14495. doi: 10.1074/jbc.M117.798744. Epub 2017 Jul 14.


Charge-Shift Corrected Electronegativities and the Effect of Bond Polarity and Substituents on Covalent-Ionic Resonance Energy.

James AM, Laconsay CJ, Galbraith JM.

J Phys Chem A. 2017 Jul 13;121(27):5190-5195. doi: 10.1021/acs.jpca.7b02988. Epub 2017 Jun 30.


Two proteins for the price of one: Structural studies of the dual-destiny protein preproalbumin with sunflower trypsin inhibitor-1.

Franke B, James AM, Mobli M, Colgrave ML, Mylne JS, Rosengren KJ.

J Biol Chem. 2017 Jul 28;292(30):12398-12411. doi: 10.1074/jbc.M117.776955. Epub 2017 May 23.


Psi4 1.1: An Open-Source Electronic Structure Program Emphasizing Automation, Advanced Libraries, and Interoperability.

Parrish RM, Burns LA, Smith DGA, Simmonett AC, DePrince AE 3rd, Hohenstein EG, Bozkaya U, Sokolov AY, Di Remigio R, Richard RM, Gonthier JF, James AM, McAlexander HR, Kumar A, Saitow M, Wang X, Pritchard BP, Verma P, Schaefer HF 3rd, Patkowski K, King RA, Valeev EF, Evangelista FA, Turney JM, Crawford TD, Sherrill CD.

J Chem Theory Comput. 2017 Jul 11;13(7):3185-3197. doi: 10.1021/acs.jctc.7b00174. Epub 2017 Jun 6.


ClickIn: a flexible protocol for quantifying mitochondrial uptake of nucleobase derivatives.

Hoogewijs K, James AM, Smith RA, Abendroth F, Gait MJ, Murphy MP, Lightowlers RN.

Interface Focus. 2017 Apr 6;7(2):20160117. doi: 10.1098/rsfs.2016.0117.


Poplar MYB115 and MYB134 Transcription Factors Regulate Proanthocyanidin Synthesis and Structure.

James AM, Ma D, Mellway R, Gesell A, Yoshida K, Walker V, Tran L, Stewart D, Reichelt M, Suvanto J, Salminen JP, Gershenzon J, Séguin A, Constabel CP.

Plant Physiol. 2017 May;174(1):154-171. doi: 10.1104/pp.16.01962. Epub 2017 Mar 27.


Protein CoAlation: a redox-regulated protein modification by coenzyme A in mammalian cells.

Tsuchiya Y, Peak-Chew SY, Newell C, Miller-Aidoo S, Mangal S, Zhyvoloup A, Bakovic J, Malanchuk O, Pereira GC, Kotiadis V, Szabadkai G, Duchen MR, Campbell M, Cuenca SR, Vidal-Puig A, James AM, Murphy MP, Filonenko V, Skehel M, Gout I.

Biochem J. 2017 Jul 11;474(14):2489-2508. doi: 10.1042/BCJ20170129.


Macrocyclization by asparaginyl endopeptidases.

James AM, Haywood J, Mylne JS.

New Phytol. 2017 Mar 21. doi: 10.1111/nph.14511. [Epub ahead of print] Review.


Evidence for Ancient Origins of Bowman-Birk Inhibitors from Selaginella moellendorffii.

James AM, Jayasena AS, Zhang J, Berkowitz O, Secco D, Knott GJ, Whelan J, Bond CS, Mylne JS.

Plant Cell. 2017 Mar;29(3):461-473. doi: 10.1105/tpc.16.00831. Epub 2017 Mar 14.


MicroRNA Detection Using a Double Molecular Beacon Approach: Distinguishing Between miRNA and Pre-miRNA.

James AM, Baker MB, Bao G, Searles CD.

Theranostics. 2017 Jan 15;7(3):634-646. doi: 10.7150/thno.16840. eCollection 2017.


Non-enzymatic N-acetylation of Lysine Residues by AcetylCoA Often Occurs via a Proximal S-acetylated Thiol Intermediate Sensitive to Glyoxalase II.

James AM, Hoogewijs K, Logan A, Hall AR, Ding S, Fearnley IM, Murphy MP.

Cell Rep. 2017 Feb 28;18(9):2105-2112. doi: 10.1016/j.celrep.2017.02.018.


Complex I assembly into supercomplexes determines differential mitochondrial ROS production in neurons and astrocytes.

Lopez-Fabuel I, Le Douce J, Logan A, James AM, Bonvento G, Murphy MP, Almeida A, Bolaños JP.

Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13063-13068. Epub 2016 Oct 31.


The Effect of Lone Pairs on Molecular Resonance Energy.

Laconsay CJ, James AM, Galbraith JM.

J Phys Chem A. 2016 Oct 10. [Epub ahead of print]


Comparative effectiveness research for the clinician researcher: a framework for making a methodological design choice.

Williams CM, Skinner EH, James AM, Cook JL, McPhail SM, Haines TP.

Trials. 2016 Aug 17;17(1):406. doi: 10.1186/s13063-016-1535-6.


Health related quality of life of children with calcaneal apophysitis: child & parent perceptions.

James AM, Williams CM, Haines TP.

Health Qual Life Outcomes. 2016 Jun 24;14:95. doi: 10.1186/s12955-016-0497-4.


Assessing the Delivery of Molecules to the Mitochondrial Matrix Using Click Chemistry.

Hoogewijs K, James AM, Smith RA, Gait MJ, Murphy MP, Lightowlers RN.

Chembiochem. 2016 Jul 15;17(14):1312-6. doi: 10.1002/cbic.201600188. Epub 2016 May 25.


Effectiveness of footwear and foot orthoses for calcaneal apophysitis: a 12-month factorial randomised trial.

James AM, Williams CM, Haines TP.

Br J Sports Med. 2016 Oct;50(20):1268-1275. doi: 10.1136/bjsports-2015-094986. Epub 2016 Feb 25.


A Unifying Mechanism for Mitochondrial Superoxide Production during Ischemia-Reperfusion Injury.

Chouchani ET, Pell VR, James AM, Work LM, Saeb-Parsy K, Frezza C, Krieg T, Murphy MP.

Cell Metab. 2016 Feb 9;23(2):254-63. doi: 10.1016/j.cmet.2015.12.009. Epub 2016 Jan 14. Review.


Assessing the Mitochondrial Membrane Potential in Cells and In Vivo using Targeted Click Chemistry and Mass Spectrometry.

Logan A, Pell VR, Shaffer KJ, Evans C, Stanley NJ, Robb EL, Prime TA, Chouchani ET, Cochemé HM, Fearnley IM, Vidoni S, James AM, Porteous CM, Partridge L, Krieg T, Smith RA, Murphy MP.

Cell Metab. 2016 Feb 9;23(2):379-85. doi: 10.1016/j.cmet.2015.11.014. Epub 2015 Dec 17.


Fasting, but Not Aging, Dramatically Alters the Redox Status of Cysteine Residues on Proteins in Drosophila melanogaster.

Menger KE, James AM, Cochemé HM, Harbour ME, Chouchani ET, Ding S, Fearnley IM, Partridge L, Murphy MP.

Cell Rep. 2015 Nov 10;13(6):1285. doi: 10.1016/j.celrep.2015.10.048. Epub 2015 Nov 10. No abstract available.


Selective superoxide generation within mitochondria by the targeted redox cycler MitoParaquat.

Robb EL, Gawel JM, Aksentijević D, Cochemé HM, Stewart TS, Shchepinova MM, Qiang H, Prime TA, Bright TP, James AM, Shattock MJ, Senn HM, Hartley RC, Murphy MP.

Free Radic Biol Med. 2015 Dec;89:883-94. doi: 10.1016/j.freeradbiomed.2015.08.021. Epub 2015 Oct 8.


A mitochondria-targeted derivative of ascorbate: MitoC.

Finichiu PG, Larsen DS, Evans C, Larsen L, Bright TP, Robb EL, Trnka J, Prime TA, James AM, Smith RA, Murphy MP.

Free Radic Biol Med. 2015 Dec;89:668-78. doi: 10.1016/j.freeradbiomed.2015.07.160. Epub 2015 Oct 8.


Treatment of chronic HCV with sofosbuvir and simeprevir in patients with cirrhosis and contraindications to interferon and/or ribavirin.

Shiffman ML, James AM, Long AG, Alexander PC.

Am J Gastroenterol. 2015 Aug;110(8):1179-85. doi: 10.1038/ajg.2015.218. Epub 2015 Jul 28.


Fasting, but Not Aging, Dramatically Alters the Redox Status of Cysteine Residues on Proteins in Drosophila melanogaster.

Menger KE, James AM, Cochemé HM, Harbour ME, Chouchani ET, Ding S, Fearnley IM, Partridge L, Murphy MP.

Cell Rep. 2015 Jun 30;11(12):1856-65. doi: 10.1016/j.celrep.2015.05.033. Epub 2015 Jun 18.


Disabling Mitochondrial Peroxide Metabolism via Combinatorial Targeting of Peroxiredoxin 3 as an Effective Therapeutic Approach for Malignant Mesothelioma.

Cunniff B, Newick K, Nelson KJ, Wozniak AN, Beuschel S, Leavitt B, Bhave A, Butnor K, Koenig A, Chouchani ET, James AM, Haynes AC, Lowther WT, Murphy MP, Shukla A, Heintz NH.

PLoS One. 2015 May 26;10(5):e0127310. doi: 10.1371/journal.pone.0127310. eCollection 2015.


Factors Associated with Pain Severity in Children with Calcaneal Apophysitis (Sever Disease).

James AM, Williams CM, Luscombe M, Hunter R, Haines TP.

J Pediatr. 2015 Aug;167(2):455-9. doi: 10.1016/j.jpeds.2015.04.053. Epub 2015 May 19.


The geographic distribution and ecological preferences of the American dog tick, Dermacentor variabilis (Say), in the U.S.A.

James AM, Burdett C, McCool MJ, Fox A, Riggs P.

Med Vet Entomol. 2015 Jun;29(2):178-88. doi: 10.1111/mve.12099. Epub 2015 Feb 16.


The mitochondrial dicarboxylate and 2-oxoglutarate carriers do not transport glutathione.

Booty LM, King MS, Thangaratnarajah C, Majd H, James AM, Kunji ER, Murphy MP.

FEBS Lett. 2015 Feb 27;589(5):621-8. doi: 10.1016/j.febslet.2015.01.027. Epub 2015 Jan 28.


Ischaemic accumulation of succinate controls reperfusion injury through mitochondrial ROS.

Chouchani ET, Pell VR, Gaude E, Aksentijević D, Sundier SY, Robb EL, Logan A, Nadtochiy SM, Ord ENJ, Smith AC, Eyassu F, Shirley R, Hu CH, Dare AJ, James AM, Rogatti S, Hartley RC, Eaton S, Costa ASH, Brookes PS, Davidson SM, Duchen MR, Saeb-Parsy K, Shattock MJ, Robinson AJ, Work LM, Frezza C, Krieg T, Murphy MP.

Nature. 2014 Nov 20;515(7527):431-435. doi: 10.1038/nature13909. Epub 2014 Nov 5.


The ap-2 clathrin adaptor mediates endocytosis of an inhibitory killer cell Ig-like receptor in human NK cells.

Purdy AK, Alvarez Arias DA, Oshinsky J, James AM, Serebriiskii I, Campbell KS.

J Immunol. 2014 Nov 1;193(9):4675-83. doi: 10.4049/jimmunol.1303406. Epub 2014 Sep 19.


Shear sensitive microRNAs and atherosclerosis.

Alexy T, James AM, Searles CD.

Biorheology. 2014;51(2-3):147-58. doi: 10.3233/BIR-140657. Review.


Cell biological steps and checkpoints in accessing NK cell cytotoxicity.

Mace EM, Dongre P, Hsu HT, Sinha P, James AM, Mann SS, Forbes LR, Watkin LB, Orange JS.

Immunol Cell Biol. 2014 Mar;92(3):245-55. doi: 10.1038/icb.2013.96. Epub 2014 Jan 21. Review.


A mitochondria-targeted mass spectrometry probe to detect glyoxals: implications for diabetes.

Pun PB, Logan A, Darley-Usmar V, Chacko B, Johnson MS, Huang GW, Rogatti S, Prime TA, Methner C, Krieg T, Fearnley IM, Larsen L, Larsen DS, Menger KE, Collins Y, James AM, Kumar GD, Hartley RC, Smith RA, Murphy MP.

Free Radic Biol Med. 2014 Feb;67:437-50. doi: 10.1016/j.freeradbiomed.2013.11.025. Epub 2013 Dec 4.


Statin use and peripheral sensory perception: a pilot study.

West B, Williams CM, Jilbert E, James AM, Haines TP.

Somatosens Mot Res. 2014 Jun;31(2):57-61. doi: 10.3109/08990220.2013.840281. Epub 2013 Nov 12.


Transplacental transfer of Azithromycin and its use for eradicating intra-amniotic ureaplasma infection in a primate model.

Acosta EP, Grigsby PL, Larson KB, James AM, Long MC, Duffy LB, Waites KB, Novy MJ.

J Infect Dis. 2014 Mar;209(6):898-904. doi: 10.1093/infdis/jit578. Epub 2013 Oct 31.


Arf-like GTPase Arl8b regulates lytic granule polarization and natural killer cell-mediated cytotoxicity.

Tuli A, Thiery J, James AM, Michelet X, Sharma M, Garg S, Sanborn KB, Orange JS, Lieberman J, Brenner MB.

Mol Biol Cell. 2013 Dec;24(23):3721-35. doi: 10.1091/mbc.E13-05-0259. Epub 2013 Oct 2.


Using exomarkers to assess mitochondrial reactive species in vivo.

Logan A, Cochemé HM, Li Pun PB, Apostolova N, Smith RA, Larsen L, Larsen DS, James AM, Fearnley IM, Rogatti S, Prime TA, Finichiu PG, Dare A, Chouchani ET, Pell VR, Methner C, Quin C, McQuaker SJ, Krieg T, Hartley RC, Murphy MP.

Biochim Biophys Acta. 2014 Feb;1840(2):923-30. doi: 10.1016/j.bbagen.2013.05.026. Epub 2013 May 30. Review.


Cardioprotection by S-nitrosation of a cysteine switch on mitochondrial complex I.

Chouchani ET, Methner C, Nadtochiy SM, Logan A, Pell VR, Ding S, James AM, Cochemé HM, Reinhold J, Lilley KS, Partridge L, Fearnley IM, Robinson AJ, Hartley RC, Smith RA, Krieg T, Brookes PS, Murphy MP.

Nat Med. 2013 Jun;19(6):753-9. doi: 10.1038/nm.3212. Epub 2013 May 26.


Molecular characterization of Trypanosoma (Megatrypanum) spp. infecting cattle (Bos taurus), white-tailed deer (Odocoileus virginianus), and elk (Cervus elaphus canadensis) in the United States.

Fisher AC, Schuster G, Cobb WJ, James AM, Cooper SM, Peréz de León AA, Holman PJ.

Vet Parasitol. 2013 Oct 18;197(1-2):29-42. doi: 10.1016/j.vetpar.2013.04.037. Epub 2013 Apr 26.


Metatarsus adductus: development of a non-surgical treatment pathway.

Williams CM, James AM, Tran T.

J Paediatr Child Health. 2013 Sep;49(9):E428-33. doi: 10.1111/jpc.12219. Epub 2013 May 6. Review.


Rapid activation receptor- or IL-2-induced lytic granule convergence in human natural killer cells requires Src, but not downstream signaling.

James AM, Hsu HT, Dongre P, Uzel G, Mace EM, Banerjee PP, Orange JS.

Blood. 2013 Apr 4;121(14):2627-37. doi: 10.1182/blood-2012-06-437012. Epub 2013 Feb 4.


Uptake of tenofovir and emtricitabine into non-monocytic female genital tract cells with and without hormonal contraceptives.

James AM, King JR, Ofotokun I, Sheth AN, Acosta EP.

J Exp Pharmacol. 2013 Aug 1;5:55-64. doi: 10.2147/JEP.S45308. eCollection 2013.


Mitochondrial accumulation of a lipophilic cation conjugated to an ionisable group depends on membrane potential, pH gradient and pK(a): implications for the design of mitochondrial probes and therapies.

Finichiu PG, James AM, Larsen L, Smith RA, Murphy MP.

J Bioenerg Biomembr. 2013 Feb;45(1-2):165-73. doi: 10.1007/s10863-012-9493-5. Epub 2012 Nov 22.


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