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Items: 1 to 50 of 301

1.

It's the deceiver, not the receiver: No individual differences when detecting deception in a foreign and a native language.

Law MKH, Jackson SA, Aidman E, Geiger M, Olderbak S, Kleitman S.

PLoS One. 2018 May 3;13(5):e0196384. doi: 10.1371/journal.pone.0196384. eCollection 2018.

2.

High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut.

Agarwal G, Clevenger J, Pandey MK, Wang H, Shasidhar Y, Chu Y, Fountain JC, Choudhary D, Culbreath AK, Liu X, Huang G, Wang X, Deshmukh R, Holbrook CC, Bertioli DJ, Ozias-Akins P, Jackson SA, Varshney RK, Guo B.

Plant Biotechnol J. 2018 Apr 10. doi: 10.1111/pbi.12930. [Epub ahead of print]

3.

Validation of a biomarker panel in Barrett's esophagus to predict progression to esophageal adenocarcinoma.

Eluri S, Klaver E, Duits LC, Jackson SA, Bergman JJ, Shaheen NJ.

Dis Esophagus. 2018 Apr 3. doi: 10.1093/dote/doy026. [Epub ahead of print]

PMID:
29635420
4.

Correction: Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems.

Silas S, Lucas-Elio P, Jackson SA, Aroca-Crevillén A, Hansen LL, Fineran PC, Fire AZ, Sánchez-Amat A.

Elife. 2018 Apr 4;7. pii: e36853. doi: 10.7554/eLife.36853. No abstract available.

5.

AbiEi Binds Cooperatively to the Type IV abiE Toxin-Antitoxin Operator Via a Positively-Charged Surface and Causes DNA Bending and Negative Autoregulation.

Hampton HG, Jackson SA, Fagerlund RD, Vogel AIM, Dy RL, Blower TR, Fineran PC.

J Mol Biol. 2018 Apr 13;430(8):1141-1156. doi: 10.1016/j.jmb.2018.02.022. Epub 2018 Mar 6.

PMID:
29518409
6.

Genic C-Methylation in Soybean Is Associated with Gene Paralogs Relocated to Transposable Element-Rich Pericentromeres.

El Baidouri M, Kim KD, Abernathy B, Li YH, Qiu LJ, Jackson SA.

Mol Plant. 2018 Mar 5;11(3):485-495. doi: 10.1016/j.molp.2018.02.006. Epub 2018 Feb 21.

7.

Diverse and Abundant Secondary Metabolism Biosynthetic Gene Clusters in the Genomes of Marine Sponge Derived Streptomyces spp. Isolates.

Jackson SA, Crossman L, Almeida EL, Margassery LM, Kennedy J, Dobson ADW.

Mar Drugs. 2018 Feb 20;16(2). pii: E67. doi: 10.3390/md16020067.

8.

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.

Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0. Epub 2018 Jan 22.

PMID:
29358651
9.

MSH6 and PMS2 germ-line pathogenic variants implicated in Lynch syndrome are associated with breast cancer.

Roberts ME, Jackson SA, Susswein LR, Zeinomar N, Ma X, Marshall ML, Stettner AR, Milewski B, Xu Z, Solomon BD, Terry MB, Hruska KS, Klein RT, Chung WK.

Genet Med. 2018 Jan 18. doi: 10.1038/gim.2017.254. [Epub ahead of print]

PMID:
29345684
10.

Genetic and epigenetic divergence of duplicate genes in two legume species.

Xu C, Nadon BD, Kim KD, Jackson SA.

Plant Cell Environ. 2018 Jan 4. doi: 10.1111/pce.13127. [Epub ahead of print]

PMID:
29314059
11.

Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family.

Richard MMS, Gratias A, Thareau V, Kim KD, Balzergue S, Joets J, Jackson SA, Geffroy V.

DNA Res. 2018 Apr 1;25(2):161-172. doi: 10.1093/dnares/dsx046.

12.

Rapid response teams: What's the latest?

Jackson SA.

Nursing. 2017 Dec;47(12):34-41. doi: 10.1097/01.NURSE.0000526885.10306.21. Review. No abstract available.

PMID:
29112046
13.

Horizontal Transfer of Non-LTR Retrotransposons from Arthropods to Flowering Plants.

Gao D, Chu Y, Xia H, Xu C, Heyduk K, Abernathy B, Ozias-Akins P, Leebens-Mack JH, Jackson SA.

Mol Biol Evol. 2018 Feb 1;35(2):354-364. doi: 10.1093/molbev/msx275.

14.

Synthesis of Nm-PHB (nanomelanin-polyhydroxy butyrate) nanocomposite film and its protective effect against biofilm-forming multi drug resistant Staphylococcus aureus.

Kiran GS, Jackson SA, Priyadharsini S, Dobson ADW, Selvin J.

Sci Rep. 2017 Aug 22;7(1):9167. doi: 10.1038/s41598-017-08816-y.

15.

Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems.

Silas S, Lucas-Elio P, Jackson SA, Aroca-Crevillén A, Hansen LL, Fineran PC, Fire AZ, Sánchez-Amat A.

Elife. 2017 Aug 17;6. pii: e27601. doi: 10.7554/eLife.27601. Erratum in: Elife. 2018 Apr 04;7:.

16.

Epigenomics: dissecting hybridization and polyploidization.

Jackson SA.

Genome Biol. 2017 Jun 19;18(1):117. doi: 10.1186/s13059-017-1254-7.

17.

Biotechnological Potential of Cold Adapted Pseudoalteromonas spp. Isolated from 'Deep Sea' Sponges.

Borchert E, Knobloch S, Dwyer E, Flynn S, Jackson SA, Jóhannsson R, Marteinsson VT, O'Gara F, Dobson ADW.

Mar Drugs. 2017 Jun 19;15(6). pii: E184. doi: 10.3390/md15060184.

18.

Simple screening protocol for identification of potential mycoremediation tools for the elimination of polycyclic aromatic hydrocarbons and phenols from hyperalkalophile industrial effluents.

Batista-García RA, Kumar VV, Ariste A, Tovar-Herrera OE, Savary O, Peidro-Guzmán H, González-Abradelo D, Jackson SA, Dobson ADW, Sánchez-Carbente MDR, Folch-Mallol JL, Leduc R, Cabana H.

J Environ Manage. 2017 Aug 1;198(Pt 2):1-11. doi: 10.1016/j.jenvman.2017.05.010. Epub 2017 May 9.

PMID:
28499155
19.

CRISPR-Cas: Adapting to change.

Jackson SA, McKenzie RE, Fagerlund RD, Kieper SN, Fineran PC, Brouns SJ.

Science. 2017 Apr 7;356(6333). pii: eaal5056. doi: 10.1126/science.aal5056. Epub 2017 Apr 6. Review.

PMID:
28385959
20.

Characterization of lignocellulolytic activities from fungi isolated from the deep-sea sponge Stelletta normani.

Batista-García RA, Sutton T, Jackson SA, Tovar-Herrera OE, Balcázar-López E, Sánchez-Carbente MD, Sánchez-Reyes A, Dobson AD, Folch-Mallol JL.

PLoS One. 2017 Mar 24;12(3):e0173750. doi: 10.1371/journal.pone.0173750. eCollection 2017.

21.

Use of a Pan-Genomic DNA Microarray in Determination of the Phylogenetic Relatedness among Cronobacter spp. and Its Use as a Data Mining Tool to Understand Cronobacter Biology.

Tall BD, Gangiredla J, Grim CJ, Patel IR, Jackson SA, Mammel MK, Kothary MH, Sathyamoorthy V, Carter L, Fanning S, Iversen C, Pagotto F, Stephan R, Lehner A, Farber J, Yan QQ, Gopinath GR.

Microarrays (Basel). 2017 Mar 4;6(1). pii: E6. doi: 10.3390/microarrays6010006. Review.

22.

High Level of Nonsynonymous Changes in Common Bean Suggests That Selection under Domestication Increased Functional Diversity at Target Traits.

Bitocchi E, Rau D, Benazzo A, Bellucci E, Goretti D, Biagetti E, Panziera A, Laidò G, Rodriguez M, Gioia T, Attene G, McClean P, Lee RK, Jackson SA, Bertorelle G, Papa R.

Front Plant Sci. 2017 Jan 6;7:2005. doi: 10.3389/fpls.2016.02005. eCollection 2016.

23.

Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.

Hossain MS, Kawakatsu T, Kim KD, Zhang N, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G.

New Phytol. 2017 Apr;214(2):808-819. doi: 10.1111/nph.14421. Epub 2017 Jan 20.

24.

The association of bacterial C9-based TTX-like compounds with Prorocentrum minimum opens new uncertainties about shellfish seafood safety.

Rodríguez I, Alfonso A, Alonso E, Rubiolo JA, Roel M, Vlamis A, Katikou P, Jackson SA, Menon ML, Dobson A, Botana LM.

Sci Rep. 2017 Jan 20;7:40880. doi: 10.1038/srep40880.

25.

Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.

Pandey MK, Agarwal G, Kale SM, Clevenger J, Nayak SN, Sriswathi M, Chitikineni A, Chavarro C, Chen X, Upadhyaya HD, Vishwakarma MK, Leal-Bertioli S, Liang X, Bertioli DJ, Guo B, Jackson SA, Ozias-Akins P, Varshney RK.

Sci Rep. 2017 Jan 16;7:40577. doi: 10.1038/srep40577.

26.

Performing Skin Microbiome Research: A Method to the Madness.

Kong HH, Andersson B, Clavel T, Common JE, Jackson SA, Olson ND, Segre JA, Traidl-Hoffmann C.

J Invest Dermatol. 2017 Mar;137(3):561-568. doi: 10.1016/j.jid.2016.10.033. Epub 2017 Jan 4. Review.

27.

Mutation Profile and Fluorescence In Situ Hybridization Analyses Increase Detection of Malignancies in Biliary Strictures.

Gonda TA, Viterbo D, Gausman V, Kipp C, Sethi A, Poneros JM, Gress F, Park T, Khan A, Jackson SA, Blauvelt M, Toney N, Finkelstein SD.

Clin Gastroenterol Hepatol. 2017 Jun;15(6):913-919.e1. doi: 10.1016/j.cgh.2016.12.013. Epub 2016 Dec 23.

28.

Nothing endures but change.

Jackson SA, Prise KM.

Br J Radiol. 2017 Jan;90(1069):20160904. doi: 10.1259/bjr.20160904. No abstract available.

29.

Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut.

Clevenger J, Chu Y, Chavarro C, Agarwal G, Bertioli DJ, Leal-Bertioli SCM, Pandey MK, Vaughn J, Abernathy B, Barkley NA, Hovav R, Burow M, Nayak SN, Chitikineni A, Isleib TG, Holbrook CC, Jackson SA, Varshney RK, Ozias-Akins P.

Mol Plant. 2017 Feb 13;10(2):309-322. doi: 10.1016/j.molp.2016.11.015. Epub 2016 Dec 18.

30.

Sonographic identification of peripheral nerves in the forearm.

Jackson SA, Derr C, De Lucia A, Harris M, Closser Z, Miladinovic B, Mhaskar R, Jorgensen T, Green L.

J Emerg Trauma Shock. 2016 Oct-Dec;9(4):146-150.

31.

Study of the performance of a thermophilic biological methanation system.

Guneratnam AJ, Ahern E, FitzGerald JA, Jackson SA, Xia A, Dobson ADW, Murphy JD.

Bioresour Technol. 2017 Feb;225:308-315. doi: 10.1016/j.biortech.2016.11.066. Epub 2016 Nov 18.

PMID:
27898322
32.

Quorum Sensing Controls Adaptive Immunity through the Regulation of Multiple CRISPR-Cas Systems.

Patterson AG, Jackson SA, Taylor C, Evans GB, Salmond GPC, Przybilski R, Staals RHJ, Fineran PC.

Mol Cell. 2016 Dec 15;64(6):1102-1108. doi: 10.1016/j.molcel.2016.11.012. Epub 2016 Nov 17.

33.

Cognitive Abilities, Monitoring Confidence, and Control Thresholds Explain Individual Differences in Heuristics and Biases.

Jackson SA, Kleitman S, Howie P, Stankov L.

Front Psychol. 2016 Oct 13;7:1559. eCollection 2016.

34.

Genome resources for climate-resilient cowpea, an essential crop for food security.

Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ.

Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3.

35.

Comprehensive definition of genome features in Spirodela polyrhiza by high-depth physical mapping and short-read DNA sequencing strategies.

Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P, Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, Ten Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S, McEntee C, Jackson SA, Mockler TC, Zhang W, Lam E.

Plant J. 2017 Feb;89(3):617-635. doi: 10.1111/tpj.13400. Epub 2017 Feb 3.

36.

Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR-Cas system.

Staals RH, Jackson SA, Biswas A, Brouns SJ, Brown CM, Fineran PC.

Nat Commun. 2016 Oct 3;7:12853. doi: 10.1038/ncomms12853.

37.

Widespread natural variation of DNA methylation within angiosperms.

Niederhuth CE, Bewick AJ, Ji L, Alabady MS, Kim KD, Li Q, Rohr NA, Rambani A, Burke JM, Udall JA, Egesi C, Schmutz J, Grimwood J, Jackson SA, Springer NM, Schmitz RJ.

Genome Biol. 2016 Sep 27;17(1):194.

38.

Diversity of Natural Product Biosynthetic Genes in the Microbiome of the Deep Sea Sponges Inflatella pellicula, Poecillastra compressa, and Stelletta normani.

Borchert E, Jackson SA, O'Gara F, Dobson AD.

Front Microbiol. 2016 Jun 29;7:1027. doi: 10.3389/fmicb.2016.01027. eCollection 2016.

39.

Crowdsourcing the nodulation gene network discovery environment.

Li Y, Jackson SA.

BMC Bioinformatics. 2016 May 26;17(1):223. doi: 10.1186/s12859-016-1089-3.

40.

Endoscopic ablation is a cost-effective cancer preventative therapy in patients with Barrett's esophagus who have elevated genomic instability.

Das A, Callenberg KM, Styn MA, Jackson SA.

Endosc Int Open. 2016 May;4(5):E549-59. doi: 10.1055/s-0042-103415. Epub 2016 Apr 15.

41.

Dynamics of a Novel Highly Repetitive CACTA Family in Common Bean (Phaseolus vulgaris).

Gao D, Zhao D, Abernathy B, Iwata-Otsubo A, Herrera-Estrella A, Jiang N, Jackson SA.

G3 (Bethesda). 2016 Jul 7;6(7):2091-101. doi: 10.1534/g3.116.028761.

42.

Role of the Perigenual Anterior Cingulate and Orbitofrontal Cortex in Contingency Learning in the Marmoset.

Jackson SA, Horst NK, Pears A, Robbins TW, Roberts AC.

Cereb Cortex. 2016 Jul;26(7):3273-84. doi: 10.1093/cercor/bhw067. Epub 2016 Apr 29.

43.

FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny.

Patel IR, Gangiredla J, Lacher DW, Mammel MK, Jackson SA, Lampel KA, Elkins CA.

Appl Environ Microbiol. 2016 May 16;82(11):3384-3394. doi: 10.1128/AEM.04077-15. Print 2016 Jun 1.

44.

Rice: The First Crop Genome.

Jackson SA.

Rice (N Y). 2016 Dec;9(1):14. doi: 10.1186/s12284-016-0087-4. Epub 2016 Mar 22. Review.

45.

PEPR: pipelines for evaluating prokaryotic references.

Olson ND, Zook JM, Samarov DV, Jackson SA, Salit ML.

Anal Bioanal Chem. 2016 Apr;408(11):2975-83. doi: 10.1007/s00216-015-9299-5. Epub 2016 Mar 2.

46.

Evolution of plant genome architecture.

Wendel JF, Jackson SA, Meyers BC, Wing RA.

Genome Biol. 2016 Mar 1;17:37. doi: 10.1186/s13059-016-0908-1. Review.

47.

Alternative Routes to Induced Pluripotent Stem Cells Revealed by Reprogramming of the Neural Lineage.

Jackson SA, Olufs ZP, Tran KA, Zaidan NZ, Sridharan R.

Stem Cell Reports. 2016 Mar 8;6(3):302-11. doi: 10.1016/j.stemcr.2016.01.009. Epub 2016 Feb 18.

48.

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.

Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P.

Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22.

PMID:
26901068
49.

Fluorescence In Situ Hybridization (FISH)-Based Karyotyping Reveals Rapid Evolution of Centromeric and Subtelomeric Repeats in Common Bean (Phaseolus vulgaris) and Relatives.

Iwata-Otsubo A, Radke B, Findley S, Abernathy B, Vallejos CE, Jackson SA.

G3 (Bethesda). 2016 Apr 7;6(4):1013-22. doi: 10.1534/g3.115.024984.

50.

Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes.

Gao D, Li Y, Kim KD, Abernathy B, Jackson SA.

Genome Biol. 2016 Jan 18;17:7. doi: 10.1186/s13059-015-0867-y.

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