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Items: 27

1.

Gastrointestinal Tract Pathology in a BALB/c Niemann-Pick Disease Type C1 Null Mouse Model.

Cougnoux A, Movassaghi M, Picache JA, Iben JR, Navid F, Salman A, Martin K, Farhat NY, Cluzeau C, Tseng WC, Burkert K, Sojka C, Wassif CA, Cawley NX, Bonnet R, Porter FD.

Dig Dis Sci. 2018 Jan 22. doi: 10.1007/s10620-018-4914-x. [Epub ahead of print]

PMID:
29357083
2.

SIRT1 is a transcriptional enhancer of the glucocorticoid receptor acting independently to its deacetylase activity.

Suzuki S, Iben JR, Coon SL, Kino T.

Mol Cell Endocrinol. 2018 Feb 5;461:178-187. doi: 10.1016/j.mce.2017.09.012. Epub 2017 Sep 18.

PMID:
28923345
3.

LARP4 mRNA codon-tRNA match contributes to LARP4 activity for ribosomal protein mRNA poly(A) tail length protection.

Mattijssen S, Arimbasseri AG, Iben JR, Gaidamakov S, Lee J, Hafner M, Maraia RJ.

Elife. 2017 Sep 12;6. pii: e28889. doi: 10.7554/eLife.28889.

4.

A novel perivascular cell population in the zebrafish brain.

Venero Galanternik M, Castranova D, Gore AV, Blewett NH, Jung HM, Stratman AN, Kirby MR, Iben J, Miller MF, Kawakami K, Maraia RJ, Weinstein BM.

Elife. 2017 Apr 11;6. pii: e24369. doi: 10.7554/eLife.24369.

5.

La Deletion from Mouse Brain Alters Pre-tRNA Metabolism and Accumulation of Pre-5.8S rRNA, with Neuron Death and Reactive Astrocytosis.

Blewett NH, Iben JR, Gaidamakov S, Maraia RJ.

Mol Cell Biol. 2017 May 2;37(10). pii: e00588-16. doi: 10.1128/MCB.00588-16. Print 2017 May 15.

6.

Evolving specificity of tRNA 3-methyl-cytidine-32 (m3C32) modification: a subset of tRNAsSer requires N6-isopentenylation of A37.

Arimbasseri AG, Iben J, Wei FY, Rijal K, Tomizawa K, Hafner M, Maraia RJ.

RNA. 2016 Sep;22(9):1400-10. doi: 10.1261/rna.056259.116. Epub 2016 Jun 27.

7.

H19ICR mediated transcriptional silencing does not require target promoter methylation.

Gebert C, Rong Q, Jeong S, Iben J, Pfeifer K.

Biochem Biophys Res Commun. 2016 Jul 29;476(3):121-6. doi: 10.1016/j.bbrc.2016.05.042. Epub 2016 May 10.

8.

Lack of tRNA-i6A modification causes mitochondrial-like metabolic deficiency in S. pombe by limiting activity of cytosolic tRNATyr, not mito-tRNA.

Lamichhane TN, Arimbasseri AG, Rijal K, Iben JR, Wei FY, Tomizawa K, Maraia RJ.

RNA. 2016 Apr;22(4):583-96. doi: 10.1261/rna.054064.115. Epub 2016 Feb 8.

9.

Epigenetic regulation of hematopoiesis by DNA methylation.

Gore AV, Athans B, Iben JR, Johnson K, Russanova V, Castranova D, Pham VN, Butler MG, Williams-Simons L, Nichols JT, Bresciani E, Feldman B, Kimmel CB, Liu PP, Weinstein BM.

Elife. 2016 Jan 27;5:e11813. doi: 10.7554/eLife.11813.

10.

RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification.

Arimbasseri AG, Blewett NH, Iben JR, Lamichhane TN, Cherkasova V, Hafner M, Maraia RJ.

PLoS Genet. 2015 Dec 31;11(12):e1005671. doi: 10.1371/journal.pgen.1005671. eCollection 2015 Dec.

11.

LEDGF/p75 interacts with mRNA splicing factors and targets HIV-1 integration to highly spliced genes.

Singh PK, Plumb MR, Ferris AL, Iben JR, Wu X, Fadel HJ, Luke BT, Esnault C, Poeschla EM, Hughes SH, Kvaratskhelia M, Levin HL.

Genes Dev. 2015 Nov 1;29(21):2287-97. doi: 10.1101/gad.267609.115.

12.

Single-Nucleotide-Specific Targeting of the Tf1 Retrotransposon Promoted by the DNA-Binding Protein Sap1 of Schizosaccharomyces pombe.

Hickey A, Esnault C, Majumdar A, Chatterjee AG, Iben JR, McQueen PG, Yang AX, Mizuguchi T, Grewal SI, Levin HL.

Genetics. 2015 Nov;201(3):905-24. doi: 10.1534/genetics.115.181602. Epub 2015 Sep 9.

13.

SNPfisher: tools for probing genetic variation in laboratory-reared zebrafish.

Butler MG, Iben JR, Marsden KC, Epstein JA, Granato M, Weinstein BM.

Development. 2015 Apr 15;142(8):1542-52. doi: 10.1242/dev.118786. Epub 2015 Mar 26.

14.

Erratum for Lamichhane et al., lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.

Lamichhane TN, Blewett NH, Crawford AK, Cherkasova VA, Iben JR, Begley TJ, Farabaugh PJ, Maraia RJ.

Mol Cell Biol. 2015 Apr;35(8):1477. doi: 10.1128/MCB.00170-15. No abstract available.

15.

High incidence of unrecognized visceral/neurological late-onset Niemann-Pick disease, type C1, predicted by analysis of massively parallel sequencing data sets.

Wassif CA, Cross JL, Iben J, Sanchez-Pulido L, Cougnoux A, Platt FM, Ory DS, Ponting CP, Bailey-Wilson JE, Biesecker LG, Porter FD.

Genet Med. 2016 Jan;18(1):41-8. doi: 10.1038/gim.2015.25. Epub 2015 Mar 12.

16.

Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases.

Cole HA, Ocampo J, Iben JR, Chereji RV, Clark DJ.

Nucleic Acids Res. 2014 Nov 10;42(20):12512-22. doi: 10.1093/nar/gku1013. Epub 2014 Oct 27.

17.

RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast.

Ganguli D, Chereji RV, Iben JR, Cole HA, Clark DJ.

Genome Res. 2014 Oct;24(10):1637-49. doi: 10.1101/gr.177014.114. Epub 2014 Jul 11.

18.

Different types of secondary information in the genetic code.

Maraia RJ, Iben JR.

RNA. 2014 Jul;20(7):977-84. doi: 10.1261/rna.044115.113. Review.

19.

Determination of the allelic frequency in Smith-Lemli-Opitz syndrome by analysis of massively parallel sequencing data sets.

Cross JL, Iben J, Simpson CL, Thurm A, Swedo S, Tierney E, Bailey-Wilson JE, Biesecker LG, Porter FD, Wassif CA.

Clin Genet. 2015 Jun;87(6):570-5. doi: 10.1111/cge.12425. Epub 2014 Jun 6.

20.

tRNA gene copy number variation in humans.

Iben JR, Maraia RJ.

Gene. 2014 Feb 25;536(2):376-84. doi: 10.1016/j.gene.2013.11.049. Epub 2013 Dec 14.

21.

Global 'bootprinting' reveals the elastic architecture of the yeast TFIIIB-TFIIIC transcription complex in vivo.

Nagarajavel V, Iben JR, Howard BH, Maraia RJ, Clark DJ.

Nucleic Acids Res. 2013 Sep;41(17):8135-43. doi: 10.1093/nar/gkt611. Epub 2013 Jul 15.

22.

Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.

Lamichhane TN, Blewett NH, Crawford AK, Cherkasova VA, Iben JR, Begley TJ, Farabaugh PJ, Maraia RJ.

Mol Cell Biol. 2013 Aug;33(15):2918-29. doi: 10.1128/MCB.00278-13. Epub 2013 May 28. Erratum in: Mol Cell Biol. 2015 Apr;35(8):1477.

23.
24.

Point mutations in the Rpb9-homologous domain of Rpc11 that impair transcription termination by RNA polymerase III.

Iben JR, Mazeika JK, Hasson S, Rijal K, Arimbasseri AG, Russo AN, Maraia RJ.

Nucleic Acids Res. 2011 Aug;39(14):6100-13. doi: 10.1093/nar/gkr182. Epub 2011 Mar 30.

25.

Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants.

Iben JR, Epstein JA, Bayfield MA, Bruinsma MW, Hasson S, Bacikova D, Ahmad D, Rockwell D, Kittler EL, Zapp ML, Maraia RJ.

Nucleic Acids Res. 2011 Jun;39(11):4728-42. doi: 10.1093/nar/gkr066. Epub 2011 Feb 11.

26.

Specific interactions of the L10(L12)4 ribosomal protein complex with mRNA, rRNA, and L11.

Iben JR, Draper DE.

Biochemistry. 2008 Mar 4;47(9):2721-31. doi: 10.1021/bi701838y. Epub 2008 Feb 5.

PMID:
18247578
27.

Pore formation and uncoupling initiate a Ca2+-independent degradation of mitochondrial phospholipids.

Broekemeier KM, Iben JR, LeVan EG, Crouser ED, Pfeiffer DR.

Biochemistry. 2002 Jun 18;41(24):7771-80.

PMID:
12056909

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