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Clec9A+ Dendritic Cells Are Not Essential for Antitumor CD8+ T Cell Responses Induced by Poly I:C Immunotherapy.

Gilfillan CB, Kuhn S, Baey C, Hyde EJ, Yang J, Ruedl C, Ronchese F.

J Immunol. 2018 Apr 15;200(8):2978-2986. doi: 10.4049/jimmunol.1701593. Epub 2018 Mar 5.


Ethics and patient and public involvement with children and young people.

Mitchell SJ, Slowther AM, Coad J, Akhtar S, Hyde E, Khan D, Dale J.

Arch Dis Child Educ Pract Ed. 2018 Feb 9. pii: edpract-2017-313480. doi: 10.1136/archdischild-2017-313480. [Epub ahead of print]


Thymic stromal lymphopoietin drives the development of IL-13+ Th2 cells.

Ochiai S, Jagot F, Kyle RL, Hyde E, White RF, Prout M, Schmidt AJ, Yamane H, Lamiable O, Le Gros G, Ronchese F.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):1033-1038. doi: 10.1073/pnas.1714348115. Epub 2018 Jan 16.


Robotic-assisted Laparoscopic Partial Nephrectomy in a Horseshoe Kidney. A Case Report and Review of the Literature.

Raman A, Kuusk T, Hyde ER, Berger LU, Bex A, Mumtaz F.

Urology. 2018 Apr;114:e3-e5. doi: 10.1016/j.urology.2017.12.003. Epub 2017 Dec 27.


Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.

Garg N, Wang M, Hyde E, da Silva RR, Melnik AV, Protsyuk I, Bouslimani A, Lim YW, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, Rohwer F, Conrad DJ, Alexandrov T, Knight R, Dorrestein PC.

Cell Host Microbe. 2017 Nov 8;22(5):705-716.e4. doi: 10.1016/j.chom.2017.10.001. Epub 2017 Oct 19.


Impacts of the Human Gut Microbiome on Therapeutics.

Vázquez-Baeza Y, Callewaert C, Debelius J, Hyde E, Marotz C, Morton JT, Swafford A, Vrbanac A, Dorrestein PC, Knight R.

Annu Rev Pharmacol Toxicol. 2018 Jan 6;58:253-270. doi: 10.1146/annurev-pharmtox-042017-031849. Epub 2017 Oct 2.


Microgravity validation of a novel system for RNA isolation and multiplex quantitative real time PCR analysis of gene expression on the International Space Station.

Parra M, Jung J, Boone TD, Tran L, Blaber EA, Brown M, Chin M, Chinn T, Cohen J, Doebler R, Hoang D, Hyde E, Lera M, Luzod LT, Mallinson M, Marcu O, Mohamedaly Y, Ricco AJ, Rubins K, Sgarlato GD, Talavera RO, Tong P, Uribe E, Williams J, Wu D, Yousuf R, Richey CS, Schonfeld J, Almeida EAC.

PLoS One. 2017 Sep 6;12(9):e0183480. doi: 10.1371/journal.pone.0183480. eCollection 2017.


Intrinsic disorder in the partitioning protein KorB persists after co-operative complex formation with operator DNA and KorA.

Hyde EI, Callow P, Rajasekar KV, Timmins P, Patel TR, Siligardi G, Hussain R, White SA, Thomas CM, Scott DJ.

Biochem J. 2017 Aug 30;474(18):3121-3135. doi: 10.1042/BCJ20170281.


The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.

Hemmings SMJ, Malan-Müller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde ER, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA.

Psychosom Med. 2017 Oct;79(8):936-946. doi: 10.1097/PSY.0000000000000512.


Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples.

Melnik AV, da Silva RR, Hyde ER, Aksenov AA, Vargas F, Bouslimani A, Protsyuk I, Jarmusch AK, Tripathi A, Alexandrov T, Knight R, Dorrestein PC.

Anal Chem. 2017 Jul 18;89(14):7549-7559. doi: 10.1021/acs.analchem.7b01381. Epub 2017 Jul 6.


Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic.

Carlson JM, Leonard AB, Hyde ER, Petrosino JF, Primm TP.

Infect Drug Resist. 2017 May 9;10:143-154. doi: 10.2147/IDR.S129055. eCollection 2017.


Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort".

Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R.

mSystems. 2017 Apr 11;2(2). pii: e00023-17. doi: 10.1128/mSystems.00023-17. eCollection 2017 Mar-Apr.


The Microbiome and Human Biology.

Knight R, Callewaert C, Marotz C, Hyde ER, Debelius JW, McDonald D, Sogin ML.

Annu Rev Genomics Hum Genet. 2017 Aug 31;18:65-86. doi: 10.1146/annurev-genom-083115-022438. Epub 2017 Mar 20. Review.


Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping.

Amir A, McDonald D, Navas-Molina JA, Debelius J, Morton JT, Hyde E, Robbins-Pianka A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00199-16. doi: 10.1128/mSystems.00199-16. eCollection 2017 Mar-Apr.


Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns.

Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, Kightley EP, Thompson LR, Hyde ER, Gonzalez A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00191-16. doi: 10.1128/mSystems.00191-16. eCollection 2017 Mar-Apr.


Normalization and microbial differential abundance strategies depend upon data characteristics.

Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde ER, Knight R.

Microbiome. 2017 Mar 3;5(1):27. doi: 10.1186/s40168-017-0237-y.


Balance Trees Reveal Microbial Niche Differentiation.

Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde ER, Lladser M, Dorrestein PC, Knight R.

mSystems. 2017 Jan 17;2(1). pii: e00162-16. doi: 10.1128/mSystems.00162-16. eCollection 2017 Jan-Feb.


Tracking Human Gut Microbiome Changes Resulting from a Colonoscopy.

Smarr L, Hyde ER, McDonald D, Sandborn WJ, Knight R.

Methods Inf Med. 2017;56(6):442-447. doi: 10.3414/ME17-01-0036. Epub 2018 Feb 10. No abstract available.


Biophysical Modeling to Determine the Optimization of Left Ventricular Pacing Site and AV/VV Delays in the Acute and Chronic Phase of Cardiac Resynchronization Therapy.

Lee AW, Crozier A, Hyde ER, Lamata P, Truong M, Sohal M, Jackson T, Behar JM, Claridge S, Shetty A, Sammut E, Plank G, Rinaldi CA, Niederer S.

J Cardiovasc Electrophysiol. 2017 Feb;28(2):208-215. doi: 10.1111/jce.13134. Epub 2017 Jan 14.


Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort.

Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R.

mSystems. 2016 Oct 18;1(5). pii: e00105-16. eCollection 2016 Sep-Oct. Erratum in: mSystems. 2017 Apr 11;2(2):.


The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat.

Hyde ER, Navas-Molina JA, Song SJ, Kueneman JG, Ackermann G, Cardona C, Humphrey G, Boyer D, Weaver T, Mendelson JR 3rd, McKenzie VJ, Gilbert JA, Knight R.

mSystems. 2016 Aug 2;1(4). pii: e00046-16. eCollection 2016 Jul-Aug.


From Sample to Multi-Omics Conclusions in under 48 Hours.

Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R.

mSystems. 2016 Apr 26;1(2). pii: e00038-16. eCollection 2016 Mar-Apr.


Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.

Walters W, Hyde ER, Berg-Lyons D, Ackermann G, Humphrey G, Parada A, Gilbert JA, Jansson JK, Caporaso JG, Fuhrman JA, Apprill A, Knight R.

mSystems. 2015 Dec 22;1(1). pii: e00009-15. eCollection 2016 Jan-Feb.


Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks.

Vázquez-Baeza Y, Hyde ER, Suchodolski JS, Knight R.

Nat Microbiol. 2016 Oct 3;1:16177. doi: 10.1038/nmicrobiol.2016.177.


Cultivating the social-emotional imagination in gifted education: insights from educational neuroscience.

Gotlieb R, Hyde E, Immordino-Yang MH, Kaufman SB.

Ann N Y Acad Sci. 2016 Aug;1377(1):22-31. doi: 10.1111/nyas.13165. Epub 2016 Aug 9. Review.



Radwan A, Bakowski J, Dew S, Greenwald B, Hyde E, Webber N.

Int J Sports Phys Ther. 2016 Apr;11(2):164-74.


Flexibility of KorA, a plasmid-encoded, global transcription regulator, in the presence and the absence of its operator.

Rajasekar KV, Lovering AL, Dancea F, Scott DJ, Harris SA, Bingle LE, Roessle M, Thomas CM, Hyde EI, White SA.

Nucleic Acids Res. 2016 Jun 2;44(10):4947-56. doi: 10.1093/nar/gkw191. Epub 2016 Mar 25.


Improvement of Right Ventricular Hemodynamics with Left Ventricular Endocardial Pacing during Cardiac Resynchronization Therapy.

Hyde ER, Behar JM, Crozier A, Claridge S, Jackson T, Sohal M, Gill JS, O'Neill MD, Razavi R, Niederer SA, Rinaldi CA.

Pacing Clin Electrophysiol. 2016 Jun;39(6):531-41. doi: 10.1111/pace.12854. Epub 2016 May 9.


The impact of beat-to-beat variability in optimising the acute hemodynamic response in cardiac resynchronisation therapy.

Niederer S, Walker C, Crozier A, Hyde ER, Blazevic B, Behar JM, Claridge S, Sohal M, Shetty A, Jackson T, Rinaldi C.

Clin Trials Regul Sci Cardiol. 2015 Dec;12:18-22.


Integrated multidisciplinary community service for chronic obstructive pulmonary disease reduces hospitalisations.

Chung LP, Lake F, Hyde E, McCamley C, Phuangmalai N, Lim M, Waterer G, Summers Q, Moodley Y.

Intern Med J. 2016 Apr;46(4):427-34. doi: 10.1111/imj.12984.


Effects of Epicardial and Endocardial Cardiac Resynchronization Therapy on Coronary Flow: Insights From Wave Intensity Analysis.

Claridge S, Chen Z, Jackson T, De Silva K, Behar J, Sohal M, Webb J, Hyde E, Lumley M, Asrress K, Williams R, Bostock J, Ali M, Gill J, O'Neill M, Razavi R, Niederer S, Perera D, Rinaldi CA.

J Am Heart Assoc. 2015 Dec 17;4(12). pii: e002626. doi: 10.1161/JAHA.115.002626.


Microbial community assembly and metabolic function during mammalian corpse decomposition.

Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R.

Science. 2016 Jan 8;351(6269):158-62. doi: 10.1126/science.aad2646. Epub 2015 Dec 10.


Euphorbia plant latex is inhabited by diverse microbial communities.

Gunawardana M, Hyde ER, Lahmeyer S, Dorsey BL, La Val TP, Mullen M, Yoo J, Knight R, Baum MM.

Am J Bot. 2015 Dec;102(12):1966-77. doi: 10.3732/ajb.1500223. Epub 2015 Dec 11.


Factors determining the magnitude of the pre-ejection leftward septal motion in left bundle branch block.

Remme EW, Niederer S, Gjesdal O, Russell K, Hyde ER, Smith N, Smiseth OA.

Europace. 2016 Dec;18(12):1905-1913. doi: 10.1093/europace/euv381. Epub 2015 Nov 26.


The host effects of Gambusia affinis with an antibiotic-disrupted microbiome.

Carlson JM, Hyde ER, Petrosino JF, Manage AB, Primm TP.

Comp Biochem Physiol C Toxicol Pharmacol. 2015 Dec;178:163-8. doi: 10.1016/j.cbpc.2015.10.004. Epub 2015 Oct 18.


IL-1βR-dependent priming of antitumor CD4+ T cells and sustained antitumor immunity after peri-tumoral treatment with MSU and mycobacteria.

Kuhn S, Yang J, Hyde EJ, Harper JL, Kirman JR, Ronchese F.

Oncoimmunology. 2015 Jun 26;4(10):e1042199. eCollection 2015 Oct.


Mechanistic insights into the benefits of multisite pacing in cardiac resynchronization therapy: The importance of electrical substrate and rate of left ventricular activation.

Sohal M, Shetty A, Niederer S, Lee A, Chen Z, Jackson T, Behar JM, Claridge S, Bostock J, Hyde E, Razavi R, Prinzen F, Rinaldi CA.

Heart Rhythm. 2015 Dec;12(12):2449-57. doi: 10.1016/j.hrthm.2015.07.012. Epub 2015 Jul 9.


Beneficial Effect on Cardiac Resynchronization From Left Ventricular Endocardial Pacing Is Mediated by Early Access to High Conduction Velocity Tissue: Electrophysiological Simulation Study.

Hyde ER, Behar JM, Claridge S, Jackson T, Lee AW, Remme EW, Sohal M, Plank G, Razavi R, Rinaldi CA, Niederer SA.

Circ Arrhythm Electrophysiol. 2015 Oct;8(5):1164-72. doi: 10.1161/CIRCEP.115.002677. Epub 2015 Jul 1.


Measurement and modeling of coronary blood flow.

Sinclair MD, Lee J, Cookson AN, Rivolo S, Hyde ER, Smith NP.

Wiley Interdiscip Rev Syst Biol Med. 2015 Nov-Dec;7(6):335-56. doi: 10.1002/wsbm.1309. Epub 2015 Jun 30. Review.


Antigen-specific cytotoxic T lymphocytes target airway CD103+ and CD11b+ dendritic cells to suppress allergic inflammation.

Daniels NJ, Hyde E, Ghosh S, Seo K, Price KM, Hoshino K, Kaisho T, Okada T, Ronchese F.

Mucosal Immunol. 2016 Jan;9(1):229-39. doi: 10.1038/mi.2015.55. Epub 2015 Jun 24.


Ribosomal RNA, the lens into life.

McDonald D, Xu Z, Hyde ER, Knight R.

RNA. 2015 Apr;21(4):692-4. doi: 10.1261/rna.050799.115. No abstract available.


Tracking down the sources of experimental contamination in microbiome studies.

Weiss S, Amir A, Hyde ER, Metcalf JL, Song SJ, Knight R.

Genome Biol. 2014 Dec 17;15(12):564. doi: 10.1186/s13059-014-0564-2.


Surface charge control through the reversible adsorption of a biomimetic polymer on silica particles.

Hyde ED, Moreno-Atanasio R, Millner PA, Neville F.

J Phys Chem B. 2015 Jan 29;119(4):1726-35. doi: 10.1021/jp5100439. Epub 2015 Jan 12.


Initial insights into bacterial succession during human decomposition.

Hyde ER, Haarmann DP, Petrosino JF, Lynne AM, Bucheli SR.

Int J Legal Med. 2015 May;129(3):661-71. doi: 10.1007/s00414-014-1128-4. Epub 2014 Nov 28.


Characterization of the rat oral microbiome and the effects of dietary nitrate.

Hyde ER, Luk B, Cron S, Kusic L, McCue T, Bauch T, Kaplan H, Tribble G, Petrosino JF, Bryan NS.

Free Radic Biol Med. 2014 Dec;77:249-57. doi: 10.1016/j.freeradbiomed.2014.09.017. Epub 2014 Oct 12.


A spatially-distributed computational model to quantify behaviour of contrast agents in MR perfusion imaging.

Cookson AN, Lee J, Michler C, Chabiniok R, Hyde E, Nordsletten D, Smith NP.

Med Image Anal. 2014 Oct;18(7):1200-16. doi: 10.1016/ Epub 2014 Jul 18.


Brain-penetrant, orally bioavailable microtubule-stabilizing small molecules are potential candidate therapeutics for Alzheimer's disease and related tauopathies.

Lou K, Yao Y, Hoye AT, James MJ, Cornec AS, Hyde E, Gay B, Lee VM, Trojanowski JQ, Smith AB 3rd, Brunden KR, Ballatore C.

J Med Chem. 2014 Jul 24;57(14):6116-27. doi: 10.1021/jm5005623. Epub 2014 Jul 3.


Metagenomic analysis of nitrate-reducing bacteria in the oral cavity: implications for nitric oxide homeostasis.

Hyde ER, Andrade F, Vaksman Z, Parthasarathy K, Jiang H, Parthasarathy DK, Torregrossa AC, Tribble G, Kaplan HB, Petrosino JF, Bryan NS.

PLoS One. 2014 Mar 26;9(3):e88645. doi: 10.1371/journal.pone.0088645. eCollection 2014.


Nasopharyngeal Proteobacteria are associated with viral etiology and acute wheezing in children with severe bronchiolitis.

Hyde ER, Petrosino JF, Piedra PA, Camargo CA Jr, Espinola JA, Mansbach JM.

J Allergy Clin Immunol. 2014 Apr;133(4):1220-2. doi: 10.1016/j.jaci.2013.10.049. Epub 2013 Dec 22. No abstract available.

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