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Items: 1 to 50 of 352

1.

Dietary Broccoli Impacts Microbial Community Structure and Attenuates Chemically Induced Colitis in Mice in an Ah receptor dependent manner.

Hubbard TD, Murray IA, Nichols RG, Cassel K, Podolsky M, Kuzu G, Tian Y, Smith P, Kennett MJ, Patterson AD, Perdew GH.

J Funct Foods. 2017 Oct;37:685-698. doi: 10.1016/j.jff.2017.08.038. Epub 2017 Sep 1.

PMID:
29242716
2.

Representational momentum and anisotropies in nearby visual space.

Hubbard TL, Ruppel SE.

Atten Percept Psychophys. 2018 Jan;80(1):94-105. doi: 10.3758/s13414-017-1430-6.

PMID:
29047030
3.

Using nylon tape to aid the formation of loop stomas.

Hubbard T, Beaton C.

Ann R Coll Surg Engl. 2017 Sep 13:1. doi: 10.1308/rcsann.2017.0167. [Epub ahead of print] No abstract available.

PMID:
29022821
4.

Time-Resolved Transposon Insertion Sequencing Reveals Genome-Wide Fitness Dynamics during Infection.

Yang G, Billings G, Hubbard TP, Park JS, Yin Leung K, Liu Q, Davis BM, Zhang Y, Wang Q, Waldor MK.

MBio. 2017 Oct 3;8(5). pii: e01581-17. doi: 10.1128/mBio.01581-17.

5.

Assessment of Ah receptor transcriptional activity mediated by halogenated dibenzo-p-dioxins and dibenzofurans (PXDD/Fs) in human and mouse cell systems.

Organtini KL, Hubbard TD, Perdew GH, Dorman FL.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2017 Dec 6;52(14):1295-1302. doi: 10.1080/10934529.2017.1362290. Epub 2017 Sep 18.

PMID:
28922086
6.

Ligand-mediated cytoplasmic retention of the Ah receptor inhibits macrophage-mediated acute inflammatory responses.

Muku GE, Lahoti TS, Murray IA, Podolsky MA, Smith KJ, Hubbard TD, Kuzu G, Gowda K, Amin SG, Perdew GH.

Lab Invest. 2017 Dec;97(12):1471-1487. doi: 10.1038/labinvest.2017.92. Epub 2017 Sep 11.

PMID:
28892097
7.

MEMS measurements of single cell stiffness decay due to cyclic mechanical loading.

Barazani B, Warnat S, MacIntosh AJ, Hubbard T.

Biomed Microdevices. 2017 Aug 25;19(4):77. doi: 10.1007/s10544-017-0219-7.

PMID:
28842775
8.

Ear Advantage for Musical Location and Relative Pitch: Effects of Musical Training and Attention.

Hutchison JL, Hubbard TL, Hubbard NA, Rypma B.

Perception. 2017 Jun;46(6):745-762. doi: 10.1177/0301006616684238. Epub 2016 Dec 22.

PMID:
28523983
9.

Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning.

Gkotsis G, Oellrich A, Velupillai S, Liakata M, Hubbard TJP, Dobson RJB, Dutta R.

Sci Rep. 2017 May 16;7:46813. doi: 10.1038/srep46813. No abstract available.

10.

Strong Short-Range Cooperativity in Hydrogen-Bond Chains.

Dominelli-Whiteley N, Brown JJ, Muchowska KB, Mati IK, Adam C, Hubbard TA, Elmi A, Brown AJ, Bell IAW, Cockroft SL.

Angew Chem Int Ed Engl. 2017 Jun 19;56(26):7658-7662. doi: 10.1002/anie.201703757. Epub 2017 Jun 1.

11.

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.

Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, Fulton RS, Kremitzki M, Magrini V, Markovic C, McGrath S, Steinberg KM, Auger K, Chow W, Collins J, Harden G, Hubbard T, Pelan S, Simpson JT, Threadgold G, Torrance J, Wood JM, Clarke L, Koren S, Boitano M, Peluso P, Li H, Chin CS, Phillippy AM, Durbin R, Wilson RK, Flicek P, Eichler EE, Church DM.

Genome Res. 2017 May;27(5):849-864. doi: 10.1101/gr.213611.116. Epub 2017 Apr 10.

12.

Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease.

Wu H, Oellrich A, Girges C, de Bono B, Hubbard TJ, Dobson RJ.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax027.

13.

Characterisation of mental health conditions in social media using Informed Deep Learning.

Gkotsis G, Oellrich A, Velupillai S, Liakata M, Hubbard TJ, Dobson RJ, Dutta R.

Sci Rep. 2017 Mar 22;7:45141. doi: 10.1038/srep45141. Erratum in: Sci Rep. 2017 May 16;7:46813.

14.

Toward a general theory of momentum-like effects.

Hubbard TL.

Behav Processes. 2017 Aug;141(Pt 1):50-66. doi: 10.1016/j.beproc.2017.02.019. Epub 2017 Feb 28. Review.

PMID:
28257789
15.

Analysis of diagnoses extracted from electronic health records in a large mental health case register.

Kovalchuk Y, Stewart R, Broadbent M, Hubbard TJ, Dobson RJ.

PLoS One. 2017 Feb 16;12(2):e0171526. doi: 10.1371/journal.pone.0171526. eCollection 2017.

16.

The Limit of Intramolecular H-Bonding.

Hubbard TA, Brown AJ, Bell IA, Cockroft SL.

J Am Chem Soc. 2016 Nov 23;138(46):15114-15117. Epub 2016 Nov 9.

PMID:
27933885
17.

Erratum to: Making sense of big data in health research: towards an EU action plan.

Auffray C, Balling R, Barroso I, Bencze L, Benson M, Bergeron J, Bernal-Delgado E, Blomberg N, Bock C, Conesa A, Del Signore S, Delogne C, Devilee P, Di Meglio A, Eijkemans M, Flicek P, Graf N, Grimm V, Guchelaar HJ, Guo YK, Gut IG, Hanbury A, Hanif S, Hilgers RD, Honrado Á, Hose DR, Houwing-Duistermaat J, Hubbard T, Janacek SH, Karanikas H, Kievits T, Kohler M, Kremer A, Lanfear J, Lengauer T, Maes E, Meert T, Müller W, Nickel D, Oledzki P, Pedersen B, Petkovic M, Pliakos K, Rattray M, I Màs JR, Schneider R, Sengstag T, Serra-Picamal X, Spek W, Vaas LA, van Batenburg O, Vandelaer M, Varnai P, Villoslada P, Vizcaíno JA, Wubbe JP, Zanetti G.

Genome Med. 2016 Nov 7;8(1):118. No abstract available.

18.

Running Memory for Clinical Handoffs: A Look at Active and Passive Processing.

Anderson-Montoya BL, Scerbo MW, Ramirez DE, Hubbard TW.

Hum Factors. 2017 May;59(3):393-406. doi: 10.1177/0018720816672514. Epub 2016 Oct 28.

PMID:
27793979
19.

Spreading activation in emotional memory networks and the cumulative effects of somatic markers.

Foster PS, Hubbard T, Campbell RW, Poole J, Pridmore M, Bell C, Harrison DW.

Brain Inform. 2017 Jun;4(2):85-93. doi: 10.1007/s40708-016-0054-2. Epub 2016 Jul 15.

20.

The Nucleoid Binding Protein H-NS Biases Genome-Wide Transposon Insertion Landscapes.

Kimura S, Hubbard TP, Davis BM, Waldor MK.

MBio. 2016 Aug 30;7(4). pii: e01351-16. doi: 10.1128/mBio.01351-16.

21.

Divergent Ah Receptor Ligand Selectivity during Hominin Evolution.

Hubbard TD, Murray IA, Bisson WH, Sullivan AP, Sebastian A, Perry GH, Jablonski NG, Perdew GH.

Mol Biol Evol. 2016 Oct;33(10):2648-58. doi: 10.1093/molbev/msw143. Epub 2016 Aug 2.

22.

Perceived causality, force, and resistance in the absence of launching.

Hubbard TL, Ruppel SE.

Psychon Bull Rev. 2017 Apr;24(2):591-596. doi: 10.3758/s13423-016-1121-7.

PMID:
27473683
23.

CRISPR/Cas9 Screens Reveal Requirements for Host Cell Sulfation and Fucosylation in Bacterial Type III Secretion System-Mediated Cytotoxicity.

Blondel CJ, Park JS, Hubbard TP, Pacheco AR, Kuehl CJ, Walsh MJ, Davis BM, Gewurz BE, Doench JG, Waldor MK.

Cell Host Microbe. 2016 Aug 10;20(2):226-37. doi: 10.1016/j.chom.2016.06.010. Epub 2016 Jul 21.

24.

A novel AhR ligand, 2AI, protects the retina from environmental stress.

Gutierrez MA, Davis SS, Rosko A, Nguyen SM, Mitchell KP, Mateen S, Neves J, Garcia TY, Mooney S, Perdew GH, Hubbard TD, Lamba DA, Ramanathan A.

Sci Rep. 2016 Jul 1;6:29025. doi: 10.1038/srep29025.

25.

Making sense of big data in health research: Towards an EU action plan.

Auffray C, Balling R, Barroso I, Bencze L, Benson M, Bergeron J, Bernal-Delgado E, Blomberg N, Bock C, Conesa A, Del Signore S, Delogne C, Devilee P, Di Meglio A, Eijkemans M, Flicek P, Graf N, Grimm V, Guchelaar HJ, Guo YK, Gut IG, Hanbury A, Hanif S, Hilgers RD, Honrado Á, Hose DR, Houwing-Duistermaat J, Hubbard T, Janacek SH, Karanikas H, Kievits T, Kohler M, Kremer A, Lanfear J, Lengauer T, Maes E, Meert T, Müller W, Nickel D, Oledzki P, Pedersen B, Petkovic M, Pliakos K, Rattray M, I Màs JR, Schneider R, Sengstag T, Serra-Picamal X, Spek W, Vaas LA, van Batenburg O, Vandelaer M, Varnai P, Villoslada P, Vizcaíno JA, Wubbe JP, Zanetti G.

Genome Med. 2016 Jun 23;8(1):71. doi: 10.1186/s13073-016-0323-y. Erratum in: Genome Med. 2016 Nov 7;8(1):118.

26.

Erratum: Chemoproteomic profiling of host and pathogen enzymes active in cholera.

Hatzios SK, Abel S, Martell J, Hubbard T, Sasabe J, Munera D, Clark L, Bachovchin DA, Qadri F, Ryan ET, Davis BM, Weerapana E, Waldor MK.

Nat Chem Biol. 2016 May 18;12(6):466. doi: 10.1038/nchembio0616-466. No abstract available.

PMID:
27191648
27.

Genetic analysis of Vibrio parahaemolyticus intestinal colonization.

Hubbard TP, Chao MC, Abel S, Blondel CJ, Abel Zur Wiesch P, Zhou X, Davis BM, Waldor MK.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):6283-8. doi: 10.1073/pnas.1601718113. Epub 2016 May 16.

28.

Chemoproteomic profiling of host and pathogen enzymes active in cholera.

Hatzios SK, Abel S, Martell J, Hubbard T, Sasabe J, Munera D, Clark L, Bachovchin DA, Qadri F, Ryan ET, Davis BM, Weerapana E, Waldor MK.

Nat Chem Biol. 2016 Apr;12(4):268-274. doi: 10.1038/nchembio.2025. Epub 2016 Feb 22. Erratum in: Nat Chem Biol. 2016 May 18;12(6):466.

29.

Can Dispersion Forces Govern Aromatic Stacking in an Organic Solvent?

Yang L, Brazier JB, Hubbard TA, Rogers DM, Cockroft SL.

Angew Chem Int Ed Engl. 2016 Jan 18;55(3):912-6. doi: 10.1002/anie.201508056. Epub 2015 Dec 3.

PMID:
26632979
30.

Effects of riboflavin and amotosalen photoactivation systems for pathogen inactivation of fresh-frozen plasma on fibrin clot structure.

Hubbard T, Backholer L, Wiltshire M, Cardigan R, Ariëns RA.

Transfusion. 2016 Jan;56(1):41-8. doi: 10.1111/trf.13261. Epub 2015 Sep 10.

PMID:
26358662
31.

An interactive genome browser of association results from the UK10K cohorts project.

Geihs M, Yan Y, Walter K, Huang J, Memari Y, Min JL, Mead D; UK10K Consortium, Hubbard TJ, Timpson NJ, Down TA, Soranzo N.

Bioinformatics. 2015 Dec 15;31(24):4029-31. doi: 10.1093/bioinformatics/btv491. Epub 2015 Aug 26.

32.

The varieties of momentum-like experience.

Hubbard TL.

Psychol Bull. 2015 Nov;141(6):1081-119. doi: 10.1037/bul0000016. Epub 2015 Aug 3.

PMID:
26237420
33.

Adaptation of the human aryl hydrocarbon receptor to sense microbiota-derived indoles.

Hubbard TD, Murray IA, Bisson WH, Lahoti TS, Gowda K, Amin SG, Patterson AD, Perdew GH.

Sci Rep. 2015 Aug 3;5:12689. doi: 10.1038/srep12689.

34.

Jejunal diverticulum enterolith causing perforation and upper abdominal peritonitis.

Hubbard TJ, Balasubramanian R, Smith JJ.

BMJ Case Rep. 2015 Jul 14;2015. pii: bcr2015210095. doi: 10.1136/bcr-2015-210095.

35.

Indole and Tryptophan Metabolism: Endogenous and Dietary Routes to Ah Receptor Activation.

Hubbard TD, Murray IA, Perdew GH.

Drug Metab Dispos. 2015 Oct;43(10):1522-35. doi: 10.1124/dmd.115.064246. Epub 2015 Jun 3. Review.

36.

Global implementation of genomic medicine: We are not alone.

Manolio TA, Abramowicz M, Al-Mulla F, Anderson W, Balling R, Berger AC, Bleyl S, Chakravarti A, Chantratita W, Chisholm RL, Dissanayake VH, Dunn M, Dzau VJ, Han BG, Hubbard T, Kolbe A, Korf B, Kubo M, Lasko P, Leego E, Mahasirimongkol S, Majumdar PP, Matthijs G, McLeod HL, Metspalu A, Meulien P, Miyano S, Naparstek Y, O'Rourke PP, Patrinos GP, Rehm HL, Relling MV, Rennert G, Rodriguez LL, Roden DM, Shuldiner AR, Sinha S, Tan P, Ulfendahl M, Ward R, Williams MS, Wong JE, Green ED, Ginsburg GS.

Sci Transl Med. 2015 Jun 3;7(290):290ps13. doi: 10.1126/scitranslmed.aab0194. Review.

37.

RpoS and quorum sensing control expression and polar localization of Vibrio cholerae chemotaxis cluster III proteins in vitro and in vivo.

Ringgaard S, Hubbard T, Mandlik A, Davis BM, Waldor MK.

Mol Microbiol. 2015 Aug;97(4):660-75. doi: 10.1111/mmi.13053. Epub 2015 Jun 6.

38.

Persistent Organic Pollutants Modify Gut Microbiota-Host Metabolic Homeostasis in Mice Through Aryl Hydrocarbon Receptor Activation.

Zhang L, Nichols RG, Correll J, Murray IA, Tanaka N, Smith PB, Hubbard TD, Sebastian A, Albert I, Hatzakis E, Gonzalez FJ, Perdew GH, Patterson AD.

Environ Health Perspect. 2015 Jul;123(7):679-88. doi: 10.1289/ehp.1409055. Epub 2015 Mar 13.

39.

An effect of contrast and luminance on visual representational momentum for location.

Hubbard TL, Ruppel SE.

Perception. 2014;43(8):754-66.

PMID:
25549506
40.

Spatial configuration of vertically related word pairs modulates the N400 component.

Hubbard TM, Magne C, Langston W.

Neuroreport. 2014 Dec 17;25(18):1424-8. doi: 10.1097/WNR.0000000000000281.

PMID:
25371283
41.

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos J, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3366. No abstract available.

42.

Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection.

Livny J, Zhou X, Mandlik A, Hubbard T, Davis BM, Waldor MK.

Nucleic Acids Res. 2014 Oct 29;42(19):12212-23. doi: 10.1093/nar/gku891. Epub 2014 Sep 27.

43.

Comparative analysis of the transcriptome across distant species.

Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, Alver BH, Auerbach R, Bell K, Bickel PJ, Boeck ME, Boley NP, Booth BW, Cherbas L, Cherbas P, Di C, Dobin A, Drenkow J, Ewing B, Fang G, Fastuca M, Feingold EA, Frankish A, Gao G, Good PJ, Guigó R, Hammonds A, Harrow J, Hoskins RA, Howald C, Hu L, Huang H, Hubbard TJ, Huynh C, Jha S, Kasper D, Kato M, Kaufman TC, Kitchen RR, Ladewig E, Lagarde J, Lai E, Leng J, Lu Z, MacCoss M, May G, McWhirter R, Merrihew G, Miller DM, Mortazavi A, Murad R, Oliver B, Olson S, Park PJ, Pazin MJ, Perrimon N, Pervouchine D, Reinke V, Reymond A, Robinson G, Samsonova A, Saunders GI, Schlesinger F, Sethi A, Slack FJ, Spencer WC, Stoiber MH, Strasbourger P, Tanzer A, Thompson OA, Wan KH, Wang G, Wang H, Watkins KL, Wen J, Wen K, Xue C, Yang L, Yip K, Zaleski C, Zhang Y, Zheng H, Brenner SE, Graveley BR, Celniker SE, Gingeras TR, Waterston R.

Nature. 2014 Aug 28;512(7515):445-8. doi: 10.1038/nature13424.

44.

Comparative analysis of pseudogenes across three phyla.

Sisu C, Pei B, Leng J, Frankish A, Zhang Y, Balasubramanian S, Harte R, Wang D, Rutenberg-Schoenberg M, Clark W, Diekhans M, Rozowsky J, Hubbard T, Harrow J, Gerstein MB.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13361-6. doi: 10.1073/pnas.1407293111. Epub 2014 Aug 25.

45.

Forms of momentum across space: representational, operational, and attentional.

Hubbard TL.

Psychon Bull Rev. 2014 Dec;21(6):1371-403. doi: 10.3758/s13423-014-0624-3. Review.

PMID:
24917187
46.

A comparison of peak callers used for DNase-Seq data.

Koohy H, Down TA, Spivakov M, Hubbard T.

PLoS One. 2014 May 8;9(5):e96303. doi: 10.1371/journal.pone.0096303. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e105136.

47.

Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Review.

48.

Characterizing genetic variants for clinical action.

Ramos EM, Din-Lovinescu C, Berg JS, Brooks LD, Duncanson A, Dunn M, Good P, Hubbard TJ, Jarvik GP, O'Donnell C, Sherry ST, Aronson N, Biesecker LG, Blumberg B, Calonge N, Colhoun HM, Epstein RS, Flicek P, Gordon ES, Green ED, Green RC, Hurles M, Kawamoto K, Knaus W, Ledbetter DH, Levy HP, Lyon E, Maglott D, McLeod HL, Rahman N, Randhawa G, Wicklund C, Manolio TA, Chisholm RL, Williams MS.

Am J Med Genet C Semin Med Genet. 2014 Mar;166C(1):93-104. doi: 10.1002/ajmg.c.31386. Epub 2014 Mar 13.

49.

Improving the surgical hot clinic.

Hubbard T, Thomas R.

BMJ Qual Improv Rep. 2014 Dec 10;3(1). pii: u206573.w2639. doi: 10.1136/bmjquality.u206573.w2639. eCollection 2014.

50.

Ensembl 2014.

Flicek P, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt S, Johnson N, Juettemann T, Kähäri AK, Keenan S, Kulesha E, Martin FJ, Maurel T, McLaren WM, Murphy DN, Nag R, Overduin B, Pignatelli M, Pritchard B, Pritchard E, Riat HS, Ruffier M, Sheppard D, Taylor K, Thormann A, Trevanion SJ, Vullo A, Wilder SP, Wilson M, Zadissa A, Aken BL, Birney E, Cunningham F, Harrow J, Herrero J, Hubbard TJ, Kinsella R, Muffato M, Parker A, Spudich G, Yates A, Zerbino DR, Searle SM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D749-55. doi: 10.1093/nar/gkt1196. Epub 2013 Dec 6.

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