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Items: 1 to 50 of 207

1.

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.

Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge M.

PLoS Comput Biol. 2018 May 21;14(5):e1006157. doi: 10.1371/journal.pcbi.1006157. [Epub ahead of print]

2.

Vision and Locomotion Shape the Interactions between Neuron Types in Mouse Visual Cortex.

Dipoppa M, Ranson A, Krumin M, Pachitariu M, Carandini M, Harris KD.

Neuron. 2018 May 2;98(3):602-615.e8. doi: 10.1016/j.neuron.2018.03.037. Epub 2018 Apr 12.

3.

Insights into the Crystallization and Structural Evolution of Glycine Dihydrate by In Situ Solid-State NMR Spectroscopy.

Cerreia Vioglio P, Mollica G, Juramy M, Hughes CE, Williams PA, Ziarelli F, Viel S, Thureau P, Harris KDM.

Angew Chem Int Ed Engl. 2018 Apr 6. doi: 10.1002/anie.201801114. [Epub ahead of print]

PMID:
29633439
4.

Effects of Arousal on Mouse Sensory Cortex Depend on Modality.

Shimaoka D, Harris KD, Carandini M.

Cell Rep. 2018 Mar 20;22(12):3160-3167. doi: 10.1016/j.celrep.2018.02.092.

5.
6.

Challenges and opportunities for large-scale electrophysiology with Neuropixels probes.

Steinmetz NA, Koch C, Harris KD, Carandini M.

Curr Opin Neurobiol. 2018 Feb 10;50:92-100. doi: 10.1016/j.conb.2018.01.009. [Epub ahead of print] Review.

7.

Fully integrated silicon probes for high-density recording of neural activity.

Jun JJ, Steinmetz NA, Siegle JH, Denman DJ, Bauza M, Barbarits B, Lee AK, Anastassiou CA, Andrei A, Aydın Ç, Barbic M, Blanche TJ, Bonin V, Couto J, Dutta B, Gratiy SL, Gutnisky DA, Häusser M, Karsh B, Ledochowitsch P, Lopez CM, Mitelut C, Musa S, Okun M, Pachitariu M, Putzeys J, Rich PD, Rossant C, Sun WL, Svoboda K, Carandini M, Harris KD, Koch C, O'Keefe J, Harris TD.

Nature. 2017 Nov 8;551(7679):232-236. doi: 10.1038/nature24636.

8.

Ab initio random structure searching of organic molecular solids: assessment and validation against experimental data.

Zilka M, Dudenko DV, Hughes CE, Williams PA, Sturniolo S, Franks WT, Pickard CJ, Yates JR, Harris KDM, Brown SP.

Phys Chem Chem Phys. 2017 Oct 4;19(38):25949-25960. doi: 10.1039/c7cp04186a.

9.

Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines.

Steinmetz NA, Buetfering C, Lecoq J, Lee CR, Peters AJ, Jacobs EAK, Coen P, Ollerenshaw DR, Valley MT, de Vries SEJ, Garrett M, Zhuang J, Groblewski PA, Manavi S, Miles J, White C, Lee E, Griffin F, Larkin JD, Roll K, Cross S, Nguyen TV, Larsen R, Pendergraft J, Daigle T, Tasic B, Thompson CL, Waters J, Olsen S, Margolis DJ, Zeng H, Hausser M, Carandini M, Harris KD.

eNeuro. 2017 Sep 6;4(5). pii: ENEURO.0207-17.2017. doi: 10.1523/ENEURO.0207-17.2017. eCollection 2017 Sep-Oct.

10.

High-Yield Methods for Accurate Two-Alternative Visual Psychophysics in Head-Fixed Mice.

Burgess CP, Lak A, Steinmetz NA, Zatka-Haas P, Bai Reddy C, Jacobs EAK, Linden JF, Paton JJ, Ranson A, Schröder S, Soares S, Wells MJ, Wool LE, Harris KD, Carandini M.

Cell Rep. 2017 Sep 5;20(10):2513-2524. doi: 10.1016/j.celrep.2017.08.047.

11.

Assessing the Detection Limit of a Minority Solid-State Form of a Pharmaceutical by 1H Double-Quantum Magic-Angle Spinning Nuclear Magnetic Resonance Spectroscopy.

Maruyoshi K, Iuga D, Watts AE, Hughes CE, Harris KDM, Brown SP.

J Pharm Sci. 2017 Nov;106(11):3372-3377. doi: 10.1016/j.xphs.2017.07.014. Epub 2017 Jul 25.

12.

Macroscopic Strain-Induced Transition from Quasi-infinite Gold Nanoparticle Chains to Defined Plasmonic Oligomers.

Steiner AM, Mayer M, Seuss M, Nikolov S, Harris KD, Alexeev A, Kuttner C, König TAF, Fery A.

ACS Nano. 2017 Sep 26;11(9):8871-8880. doi: 10.1021/acsnano.7b03087. Epub 2017 Aug 29.

PMID:
28719741
13.

Different roles for inhibition in the rhythm-generating respiratory network.

Harris KD, Dashevskiy T, Mendoza J, Garcia AJ 3rd, Ramirez JM, Shea-Brown E.

J Neurophysiol. 2017 Oct 1;118(4):2070-2088. doi: 10.1152/jn.00174.2017. Epub 2017 Jun 14.

PMID:
28615332
14.
15.

`NMR Crystallization': in-situ NMR techniques for time-resolved monitoring of crystallization processes.

Harris KD, Hughes CE, Williams PA, Edwards-Gau GR.

Acta Crystallogr C Struct Chem. 2017 Mar 1;73(Pt 3):137-148. doi: 10.1107/S2053229616019811. Epub 2017 Feb 6.

PMID:
28257007
16.

Optimal Degrees of Synaptic Connectivity.

Litwin-Kumar A, Harris KD, Axel R, Sompolinsky H, Abbott LF.

Neuron. 2017 Mar 8;93(5):1153-1164.e7. doi: 10.1016/j.neuron.2017.01.030. Epub 2017 Feb 16.

17.

Salt Segregation and Sample Cleanup on Perfluoro-Coated Nanostructured Surfaces for Laser Desorption Ionization Mass Spectrometry of Biofluid Samples.

Zhou Y, Peng C, Harris KD, Mandal R, Harrison DJ.

Anal Chem. 2017 Mar 21;89(6):3362-3369. doi: 10.1021/acs.analchem.6b03934. Epub 2017 Mar 3.

PMID:
28215086
18.

Synaptic scaling in sleep.

Acsády L, Harris KD.

Science. 2017 Feb 3;355(6324):457. doi: 10.1126/science.aam7917. No abstract available.

PMID:
28154034
19.

Subcortical Source and Modulation of the Narrowband Gamma Oscillation in Mouse Visual Cortex.

Saleem AB, Lien AD, Krumin M, Haider B, Rosón MR, Ayaz A, Reinhold K, Busse L, Carandini M, Harris KD.

Neuron. 2017 Jan 18;93(2):315-322. doi: 10.1016/j.neuron.2016.12.028.

20.

Determining Molecular Orientations in Disordered Materials from X-ray Linear Dichroism at the Iodine L1-Edge.

Palmer BA, Collins SP, Hulliger J, Hughes CE, Harris KD.

J Am Chem Soc. 2016 Dec 21;138(50):16188-16191. doi: 10.1021/jacs.6b09054. Epub 2016 Dec 9.

PMID:
27935685
21.

Inhibitory control of correlated intrinsic variability in cortical networks.

Stringer C, Pachitariu M, Steinmetz NA, Okun M, Bartho P, Harris KD, Sahani M, Lesica NA.

Elife. 2016 Dec 7;5. pii: e19695. doi: 10.7554/eLife.19695.

22.

Calculation of solid-state NMR lineshapes using contour analysis.

Hughes CE, Harris KD.

Solid State Nucl Magn Reson. 2016 Nov;80:7-13. doi: 10.1016/j.ssnmr.2016.10.002. Epub 2016 Oct 13.

23.

Improving data quality in neuronal population recordings.

Harris KD, Quiroga RQ, Freeman J, Smith SL.

Nat Neurosci. 2016 Aug 26;19(9):1165-74. doi: 10.1038/nn.4365. Review.

24.

Spike sorting for large, dense electrode arrays.

Rossant C, Kadir SN, Goodman DFM, Schulman J, Hunter MLD, Saleem AB, Grosmark A, Belluscio M, Denfield GH, Ecker AS, Tolias AS, Solomon S, Buzsaki G, Carandini M, Harris KD.

Nat Neurosci. 2016 Apr;19(4):634-641. doi: 10.1038/nn.4268. Epub 2016 Mar 14.

25.

Long Term Recordings with Immobile Silicon Probes in the Mouse Cortex.

Okun M, Lak A, Carandini M, Harris KD.

PLoS One. 2016 Mar 9;11(3):e0151180. doi: 10.1371/journal.pone.0151180. eCollection 2016.

26.

Fabrication of Semiordered Nanopatterned Diamond-like Carbon and Titania Films for Blood Contacting Applications.

Nandakumar D, Bendavid A, Martin PJ, Harris KD, Ruys AJ, Lord MS.

ACS Appl Mater Interfaces. 2016 Mar 23;8(11):6802-10. doi: 10.1021/acsami.5b11614. Epub 2016 Mar 8.

PMID:
26928086
28.

Packet-based communication in the cortex.

Luczak A, McNaughton BL, Harris KD.

Nat Rev Neurosci. 2015 Dec;16(12):745-55. doi: 10.1038/nrn4026. Epub 2015 Oct 28. Review.

PMID:
26507295
29.

X-ray Birefringence Imaging of Materials with Anisotropic Molecular Dynamics.

Palmer BA, Edwards-Gau GR, Kariuki BM, Harris KD, Dolbnya IP, Collins SP, Sutter JP.

J Phys Chem Lett. 2015 Feb 5;6(3):561-7. doi: 10.1021/jz502652n. Epub 2015 Jan 27.

PMID:
26261979
30.

The Nature of Shared Cortical Variability.

Lin IC, Okun M, Carandini M, Harris KD.

Neuron. 2015 Aug 5;87(3):644-56. doi: 10.1016/j.neuron.2015.06.035. Epub 2015 Jul 23.

31.

Automated Defect and Correlation Length Analysis of Block Copolymer Thin Film Nanopatterns.

Murphy JN, Harris KD, Buriak JM.

PLoS One. 2015 Jul 24;10(7):e0133088. doi: 10.1371/journal.pone.0133088. eCollection 2015.

32.

Reply to Garcia et al.: Common mistakes in measuring frequency-dependent word characteristics.

Dodds PS, Clark EM, Desu S, Frank MR, Reagan AJ, Williams JR, Mitchell L, Harris KD, Kloumann IM, Bagrow JP, Megerdoomian K, McMahon MT, Tivnan BF, Danforth CM.

Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):E2984-5. doi: 10.1073/pnas.1505647112. Epub 2015 May 21. No abstract available.

33.

New in situ solid-state NMR techniques for probing the evolution of crystallization processes: pre-nucleation, nucleation and growth.

Hughes CE, Williams PA, Keast VL, Charalampopoulos VG, Edwards-Gau GR, Harris KD.

Faraday Discuss. 2015;179:115-40. doi: 10.1039/c4fd00215f. Epub 2015 Apr 10.

PMID:
25859760
34.

Diverse coupling of neurons to populations in sensory cortex.

Okun M, Steinmetz N, Cossell L, Iacaruso MF, Ko H, Barthó P, Moore T, Hofer SB, Mrsic-Flogel TD, Carandini M, Harris KD.

Nature. 2015 May 28;521(7553):511-515. doi: 10.1038/nature14273. Epub 2015 Apr 6.

35.

Changes in lumbar multifidus muscle function and nociceptive sensitivity in low back pain patient responders versus non-responders after dry needling treatment.

Koppenhaver SL, Walker MJ, Su J, McGowen JM, Umlauf L, Harris KD, Ross MD.

Man Ther. 2015 Dec;20(6):769-76. doi: 10.1016/j.math.2015.03.003. Epub 2015 Mar 13.

PMID:
25801100
36.

Cortical computation in mammals and birds.

Harris KD.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3184-5. doi: 10.1073/pnas.1502209112. Epub 2015 Mar 9. No abstract available.

37.

Stochastic transitions into silence cause noise correlations in cortical circuits.

Mochol G, Hermoso-Mendizabal A, Sakata S, Harris KD, de la Rocha J.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3529-34. doi: 10.1073/pnas.1410509112. Epub 2015 Mar 4.

38.

Human language reveals a universal positivity bias.

Dodds PS, Clark EM, Desu S, Frank MR, Reagan AJ, Williams JR, Mitchell L, Harris KD, Kloumann IM, Bagrow JP, Megerdoomian K, McMahon MT, Tivnan BF, Danforth CM.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2389-94. doi: 10.1073/pnas.1411678112. Epub 2015 Feb 9.

39.

L-Lysine: exploiting powder X-ray diffraction to complete the set of crystal structures of the 20 directly encoded proteinogenic amino acids.

Williams PA, Hughes CE, Harris KD.

Angew Chem Int Ed Engl. 2015 Mar 23;54(13):3973-7. doi: 10.1002/anie.201411520. Epub 2015 Feb 4.

PMID:
25651303
40.

Instrument for evaluating the electrical resistance and wavelength-resolved transparency of stretchable electronics during strain.

Azar AD, Finley E, Harris KD.

Rev Sci Instrum. 2015 Jan;86(1):013901. doi: 10.1063/1.4904840.

PMID:
25638091
41.

The neocortical circuit: themes and variations.

Harris KD, Shepherd GM.

Nat Neurosci. 2015 Feb;18(2):170-81. doi: 10.1038/nn.3917. Epub 2015 Jan 27. Review.

42.

Why are neurotransmitters neurotoxic? An evolutionary perspective.

Harris KD, Weiss M, Zahavi A.

Version 2. F1000Res. 2014 Jul 30 [revised 2014 Jan 1];3:179. doi: 10.12688/f1000research.4828.2. eCollection 2014.

43.

Cortical state determines global variability and correlations in visual cortex.

Schölvinck ML, Saleem AB, Benucci A, Harris KD, Carandini M.

J Neurosci. 2015 Jan 7;35(1):170-8. doi: 10.1523/JNEUROSCI.4994-13.2015.

44.

Monitoring the evolution of crystallization processes by in-situ solid-state NMR spectroscopy.

Harris KD, Hughes CE, Williams PA.

Solid State Nucl Magn Reson. 2015 Feb;65:107-13. doi: 10.1016/j.ssnmr.2014.11.004. Epub 2014 Dec 4. Review.

PMID:
25542671
45.

A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity.

Yamawaki N, Borges K, Suter BA, Harris KD, Shepherd GM.

Elife. 2014 Dec 19;3:e05422. doi: 10.7554/eLife.05422.

46.

High-dimensional cluster analysis with the masked EM algorithm.

Kadir SN, Goodman DF, Harris KD.

Neural Comput. 2014 Nov;26(11):2379-94. doi: 10.1162/NECO_a_00661. Epub 2014 Aug 22.

47.

Sleep replay meets brain-machine interface.

Harris KD.

Nat Neurosci. 2014 Aug;17(8):1019-21. doi: 10.1038/nn.3769. No abstract available.

PMID:
25065437
48.

"CLASSIC NMR": an in-situ NMR strategy for mapping the time-evolution of crystallization processes by combined liquid-state and solid-state measurements.

Hughes CE, Williams PA, Harris KD.

Angew Chem Int Ed Engl. 2014 Aug 18;53(34):8939-43. doi: 10.1002/anie.201404266. Epub 2014 Jul 7.

49.

Highly efficient chiral resolution of DL-arginine by cocrystal formation followed by recrystallization under preferential-enrichment conditions.

Iwama S, Kuyama K, Mori Y, Manoj K, Gonnade RG, Suzuki K, Hughes CE, Williams PA, Harris KD, Veesler S, Takahashi H, Tsue H, Tamura R.

Chemistry. 2014 Aug 11;20(33):10343-50. doi: 10.1002/chem.201402446. Epub 2014 Jul 15.

PMID:
25042834
50.

Ongoing network state controls the length of sleep spindles via inhibitory activity.

Barthó P, Slézia A, Mátyás F, Faradzs-Zade L, Ulbert I, Harris KD, Acsády L.

Neuron. 2014 Jun 18;82(6):1367-79. doi: 10.1016/j.neuron.2014.04.046.

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