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Items: 1 to 50 of 108

1.

Standardizing the Prearthritic Hip Joint Space Width: An Analysis of 994 Hips.

Kraeutler MJ, Garabekyan T, Goodrich JA, Fioravanti MJ, Chadayammuri V, Mei-Dan O.

Arthroscopy. 2018 May 2. pii: S0749-8063(18)30187-7. doi: 10.1016/j.arthro.2018.02.036. [Epub ahead of print]

PMID:
29730216
2.

Quadriceps Tendon Autograft for Primary Anterior Cruciate Ligament Reconstruction: A Systematic Review of Comparative Studies With Minimum 2-Year Follow-Up.

Belk JW, Kraeutler MJ, Marshall HA, Goodrich JA, McCarty EC.

Arthroscopy. 2018 May;34(5):1699-1707. doi: 10.1016/j.arthro.2018.01.047. Epub 2018 Apr 5. Review.

PMID:
29628379
3.

Hip Distraction Without a Perineal Post: A Prospective Study of 1000 Hip Arthroscopy Cases.

Mei-Dan O, Kraeutler MJ, Garabekyan T, Goodrich JA, Young DA.

Am J Sports Med. 2018 Mar;46(3):632-641. doi: 10.1177/0363546517741704. Epub 2017 Dec 15.

PMID:
29244523
4.

The Iliofemoral Line: A Radiographic Sign of Acetabular Dysplasia in the Adult Hip.

Kraeutler MJ, Ashwell ZR, Garabekyan T, Goodrich JA, Welton KL, Flug JA, O'Hara JN, Mei-Dan O.

Am J Sports Med. 2017 Sep;45(11):2493-2500. doi: 10.1177/0363546517708983. Epub 2017 Jun 13.

PMID:
28609639
5.

Reaction products of hexamethylene diisocyanate vapors with "self" molecules in the airways of rabbits exposed via tracheostomy.

Wisnewski AV, Kanyo J, Asher J, Goodrich JA, Barnett G, Patrylak L, Liu J, Redlich CA, Nassar AF.

Xenobiotica. 2018 May;48(5):488-497. doi: 10.1080/00498254.2017.1329569. Epub 2017 Jun 1.

6.

Finding the start site: redefining the human initiator element.

Kugel JF, Goodrich JA.

Genes Dev. 2017 Jan 1;31(1):1-2. doi: 10.1101/gad.295980.117.

7.

Beneficial Effects of Cooling during Constant Power Non-steady State Cycling.

Homestead EP, Ryan BJ, Goodrich JA, Byrnes WC.

Int J Sports Med. 2017 Feb;38(2):141-149. doi: 10.1055/s-0042-119030. Epub 2016 Dec 16.

PMID:
27984844
8.

Correction for Abrisch et al., Infection by Herpes Simplex Virus 1 Causes Near-Complete Loss of RNA Polymerase II Occupancy on the Host Cell Genome.

Abrisch RG, Eidem TM, Yakovchuk P, Kugel JF, Goodrich JA.

J Virol. 2016 Nov 28;90(24):11279. Print 2016 Dec 15. No abstract available.

9.

Neuronal and glial changes in the brain resulting from explosive blast in an experimental model.

Goodrich JA, Kim JH, Situ R, Taylor W, Westmoreland T, Du F, Parks S, Ling G, Hwang JY, Rapuano A, Bandak FA, de Lanerolle NC.

Acta Neuropathol Commun. 2016 Nov 24;4(1):124.

10.

The HMGB1 C-Terminal Tail Regulates DNA Bending.

Blair RH, Horn AE, Pazhani Y, Grado L, Goodrich JA, Kugel JF.

J Mol Biol. 2016 Oct 9;428(20):4060-4072. doi: 10.1016/j.jmb.2016.08.018. Epub 2016 Aug 21.

11.

Ten Days of Intermittent, Low-dose Carbon Monoxide Inhalation does not Significantly Alter Hemoglobin Mass, Aerobic Performance Predictors, or Peak-power Exercise Tolerance.

Ryan BJ, Goodrich JA, Schmidt W, Kane LA, Byrnes WC.

Int J Sports Med. 2016 Oct;37(11):884-9. doi: 10.1055/s-0042-108197. Epub 2016 Jul 13.

PMID:
27410770
12.

Single molecule microscopy reveals mechanistic insight into RNA polymerase II preinitiation complex assembly and transcriptional activity.

Horn AE, Kugel JF, Goodrich JA.

Nucleic Acids Res. 2016 Sep 6;44(15):7132-43. doi: 10.1093/nar/gkw321. Epub 2016 Apr 25.

13.

Noncoding RNAs: Regulators of the Mammalian Transcription Machinery.

Eidem TM, Kugel JF, Goodrich JA.

J Mol Biol. 2016 Jun 19;428(12):2652-2659. doi: 10.1016/j.jmb.2016.02.019. Epub 2016 Feb 23. Review.

14.

Haemoglobin mass alterations in healthy humans following four-day head-down tilt bed rest.

Ryan BJ, Goodrich JA, Schmidt WF, Stothard ER, Wright KP Jr, Byrnes WC.

Exp Physiol. 2016 May 1;101(5):628-40. doi: 10.1113/EP085665. Epub 2016 Mar 24.

15.

Infection by Herpes Simplex Virus 1 Causes Near-Complete Loss of RNA Polymerase II Occupancy on the Host Cell Genome.

Abrisch RG, Eidem TM, Yakovchuk P, Kugel JF, Goodrich JA.

J Virol. 2015 Dec 16;90(5):2503-13. doi: 10.1128/JVI.02665-15. Erratum in: J Virol. 2016 Nov 28;90(24):11279.

16.
17.

A new twist on cell growth control.

Cardiello JF, Kugel JF, Goodrich JA.

Cell Cycle. 2014;13(22):3474-5. doi: 10.4161/15384101.2014.980702. No abstract available.

18.
19.

Selection and characterization of a DNA aptamer that can discriminate between cJun/cJun and cJun/cFos.

Walters RD, McSwiggen DT, Goodrich JA, Kugel JF.

PLoS One. 2014 Jun 26;9(6):e101015. doi: 10.1371/journal.pone.0101015. eCollection 2014.

20.

Single molecule studies of RNA polymerase II transcription in vitro.

Horn AE, Goodrich JA, Kugel JF.

Transcription. 2014 Jan 8;5(1). [Epub ahead of print] Review.

PMID:
24406345
21.

Single molecule studies of RNA polymerase II transcription in vitro.

Horn AE, Goodrich JA, Kugel JF.

Transcription. 2014;5(1):e27608. doi: 10.4161/trns.27608. Review.

22.

NFATc2 recruits cJun homodimers to an NFAT site to synergistically activate interleukin-2 transcription.

Walters RD, Drullinger LF, Kugel JF, Goodrich JA.

Mol Immunol. 2013 Nov;56(1-2):48-56. doi: 10.1016/j.molimm.2013.03.022. Epub 2013 May 9.

23.

Using FRET to monitor protein-induced DNA bending: the TBP-TATA complex as a model system.

Blair RH, Goodrich JA, Kugel JF.

Methods Mol Biol. 2013;977:203-15. doi: 10.1007/978-1-62703-284-1_16.

PMID:
23436364
24.

The non-coding B2 RNA binds to the DNA cleft and active-site region of RNA polymerase II.

Ponicsan SL, Houel S, Old WM, Ahn NG, Goodrich JA, Kugel JF.

J Mol Biol. 2013 Oct 9;425(19):3625-38. doi: 10.1016/j.jmb.2013.01.035. Epub 2013 Feb 8.

25.

The regulation of mammalian mRNA transcription by lncRNAs: recent discoveries and current concepts.

Kugel JF, Goodrich JA.

Epigenomics. 2013 Feb;5(1):95-102. doi: 10.2217/epi.12.69.

26.

RNA polymerase II acts as an RNA-dependent RNA polymerase to extend and destabilize a non-coding RNA.

Wagner SD, Yakovchuk P, Gilman B, Ponicsan SL, Drullinger LF, Kugel JF, Goodrich JA.

EMBO J. 2013 Mar 20;32(6):781-90. doi: 10.1038/emboj.2013.18. Epub 2013 Feb 8.

27.

Structural insights into transcriptional repression by noncoding RNAs that bind to human Pol II.

Kassube SA, Fang J, Grob P, Yakovchuk P, Goodrich JA, Nogales E.

J Mol Biol. 2013 Oct 9;425(19):3639-48. doi: 10.1016/j.jmb.2012.08.024. Epub 2012 Sep 4.

28.

Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics.

Blair RH, Goodrich JA, Kugel JF.

Biochemistry. 2012 Sep 25;51(38):7444-55. doi: 10.1021/bi300491j. Epub 2012 Sep 11.

29.

ERK1/2 activation is a therapeutic target in age-related macular degeneration.

Dridi S, Hirano Y, Tarallo V, Kim Y, Fowler BJ, Ambati BK, Bogdanovich S, Chiodo VA, Hauswirth WW, Kugel JF, Goodrich JA, Ponicsan SL, Hinton DR, Kleinman ME, Baffi JZ, Gelfand BD, Ambati J.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):13781-6. doi: 10.1073/pnas.1206494109. Epub 2012 Aug 6.

30.

DICER1 loss and Alu RNA induce age-related macular degeneration via the NLRP3 inflammasome and MyD88.

Tarallo V, Hirano Y, Gelfand BD, Dridi S, Kerur N, Kim Y, Cho WG, Kaneko H, Fowler BJ, Bogdanovich S, Albuquerque RJ, Hauswirth WW, Chiodo VA, Kugel JF, Goodrich JA, Ponicsan SL, Chaudhuri G, Murphy MP, Dunaief JL, Ambati BK, Ogura Y, Yoo JW, Lee DK, Provost P, Hinton DR, Núñez G, Baffi JZ, Kleinman ME, Ambati J.

Cell. 2012 May 11;149(4):847-59. doi: 10.1016/j.cell.2012.03.036. Epub 2012 Apr 26.

31.

Non-coding RNAs: key regulators of mammalian transcription.

Kugel JF, Goodrich JA.

Trends Biochem Sci. 2012 Apr;37(4):144-51. doi: 10.1016/j.tibs.2011.12.003. Epub 2012 Feb 1. Review.

32.

Rhabdomyolysis and acute renal failure following minimally invasive spine surgery: report of 5 cases.

Dakwar E, Rifkin SI, Volcan IJ, Goodrich JA, Uribe JS.

J Neurosurg Spine. 2011 Jun;14(6):785-8. doi: 10.3171/2011.2.SPINE10369. Epub 2011 Mar 18. Erratum in: J Neurosurg Spine. 2012 Jan;16(1):104.

PMID:
21417696
33.

B2 RNA represses TFIIH phosphorylation of RNA polymerase II.

Yakovchuk P, Goodrich JA, Kugel JF.

Transcription. 2011 Jan-Feb;2(1):45-9. doi: 10.4161/trns.2.1.14306.

34.

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins.

Hansen EE, Lozupone CA, Rey FE, Wu M, Guruge JL, Narra A, Goodfellow J, Zaneveld JR, McDonald DT, Goodrich JA, Heath AC, Knight R, Gordon JI.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4599-606. doi: 10.1073/pnas.1000071108. Epub 2011 Feb 11.

35.

DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration.

Kaneko H, Dridi S, Tarallo V, Gelfand BD, Fowler BJ, Cho WG, Kleinman ME, Ponicsan SL, Hauswirth WW, Chiodo VA, Karikó K, Yoo JW, Lee DK, Hadziahmetovic M, Song Y, Misra S, Chaudhuri G, Buaas FW, Braun RE, Hinton DR, Zhang Q, Grossniklaus HE, Provis JM, Madigan MC, Milam AH, Justice NL, Albuquerque RJ, Blandford AD, Bogdanovich S, Hirano Y, Witta J, Fuchs E, Littman DR, Ambati BK, Rudin CM, Chong MM, Provost P, Kugel JF, Goodrich JA, Dunaief JL, Baffi JZ, Ambati J.

Nature. 2011 Mar 17;471(7338):325-30. doi: 10.1038/nature09830. Epub 2011 Feb 6.

36.

XPB, a subunit of TFIIH, is a target of the natural product triptolide.

Titov DV, Gilman B, He QL, Bhat S, Low WK, Dang Y, Smeaton M, Demain AL, Miller PS, Kugel JF, Goodrich JA, Liu JO.

Nat Chem Biol. 2011 Mar;7(3):182-8. doi: 10.1038/nchembio.522. Epub 2011 Jan 30.

37.

A prospective, nonrandomized, multicenter evaluation of extreme lateral interbody fusion for the treatment of adult degenerative scoliosis: perioperative outcomes and complications.

Isaacs RE, Hyde J, Goodrich JA, Rodgers WB, Phillips FM.

Spine (Phila Pa 1976). 2010 Dec 15;35(26 Suppl):S322-30. doi: 10.1097/BRS.0b013e3182022e04.

PMID:
21160396
38.

Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation.

Goodrich JA, Tjian R.

Nat Rev Genet. 2010 Aug;11(8):549-58. doi: 10.1038/nrg2847. Epub 2010 Jul 13. Review.

39.

The C-terminal region of human NFATc2 binds cJun to synergistically activate interleukin-2 transcription.

Nguyen TN, Kim LJ, Walters RD, Drullinger LF, Lively TN, Kugel JF, Goodrich JA.

Mol Immunol. 2010 Aug;47(14):2314-22. doi: 10.1016/j.molimm.2010.05.287. Epub 2010 Jun 16.

40.

Genome-wide insights into eukaryotic transcriptional control.

Goodrich JA, Kugel JF.

Genome Biol. 2010;11(6):305. doi: 10.1186/gb-2010-11-6-305. Epub 2010 Jun 7.

41.

Dampening DNA binding: a common mechanism of transcriptional repression for both ncRNAs and protein domains.

Goodrich JA, Kugel JF.

RNA Biol. 2010 May-Jun;7(3):305-9. Epub 2010 May 26. Review.

42.

Development of the Metropolitan Water Availability Index (MWAI) and short-term assessment with multi-scale remote sensing technologies.

Chang NB, Yang YJ, Goodrich JA, Daranpob A.

J Environ Manage. 2010 Jun;91(6):1397-413. doi: 10.1016/j.jenvman.2010.02.024. Epub 2010 Mar 12.

PMID:
20227167
43.

Genomic gems: SINE RNAs regulate mRNA production.

Ponicsan SL, Kugel JF, Goodrich JA.

Curr Opin Genet Dev. 2010 Apr;20(2):149-55. doi: 10.1016/j.gde.2010.01.004. Epub 2010 Feb 20. Review.

44.

RNA polymerase II and TAFs undergo a slow isomerization after the polymerase is recruited to promoter-bound TFIID.

Yakovchuk P, Gilman B, Goodrich JA, Kugel JF.

J Mol Biol. 2010 Mar 19;397(1):57-68. doi: 10.1016/j.jmb.2010.01.025. Epub 2010 Jan 18.

PMID:
20083121
45.

TFIIF facilitates dissociation of RNA polymerase II from noncoding RNAs that lack a repression domain.

Wagner SD, Kugel JF, Goodrich JA.

Mol Cell Biol. 2010 Jan;30(1):91-7. doi: 10.1128/MCB.01115-09.

46.

InvAluable junk: the cellular impact and function of Alu and B2 RNAs.

Walters RD, Kugel JF, Goodrich JA.

IUBMB Life. 2009 Aug;61(8):831-7. doi: 10.1002/iub.227. Review.

47.

In new company: U1 snRNA associates with TAF15.

Kugel JF, Goodrich JA.

EMBO Rep. 2009 May;10(5):454-6. doi: 10.1038/embor.2009.65. Epub 2009 Apr 17. No abstract available.

48.

B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes.

Yakovchuk P, Goodrich JA, Kugel JF.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5569-74. doi: 10.1073/pnas.0810738106. Epub 2009 Mar 23.

49.

Real-time contaminant detection and classification in a drinking water pipe using conventional water quality sensors: techniques and experimental results.

Jeffrey Yang Y, Haught RC, Goodrich JA.

J Environ Manage. 2009 Jun;90(8):2494-506. doi: 10.1016/j.jenvman.2009.01.021. Epub 2009 Mar 6.

PMID:
19269081
50.

TATA-binding protein and transcription factor IIB induce transcript slipping during early transcription by RNA polymerase II.

Gilman B, Drullinger LF, Kugel JF, Goodrich JA.

J Biol Chem. 2009 Apr 3;284(14):9093-8. doi: 10.1074/jbc.M900019200. Epub 2009 Feb 4.

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