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Items: 18

1.

Thermal proteome profiling of breast cancer cells reveals proteasomal activation by CDK4/6 inhibitor palbociclib.

Miettinen TP, Peltier J, Härtlova A, Gierliński M, Jansen VM, Trost M, Björklund M.

EMBO J. 2018 May 15;37(10). pii: e98359. doi: 10.15252/embj.201798359. Epub 2018 Apr 18.

2.

Mechanisms mitigating problems associated with multiple kinetochores on one microtubule in early mitosis.

Yue Z, Komoto S, Gierlinski M, Pasquali D, Kitamura E, Tanaka TU.

J Cell Sci. 2017 Jul 15;130(14):2266-2276. doi: 10.1242/jcs.203000. Epub 2017 May 25.

3.

Molecular mechanisms facilitating the initial kinetochore encounter with spindle microtubules.

Vasileva V, Gierlinski M, Yue Z, O'Reilly N, Kitamura E, Tanaka TU.

J Cell Biol. 2017 Jun 5;216(6):1609-1622. doi: 10.1083/jcb.201608122. Epub 2017 Apr 26.

4.

Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ.

RNA. 2016 Oct;22(10):1641. doi: 10.1261/rna.058339.116. No abstract available.

5.

High resolution imaging reveals heterogeneity in chromatin states between cells that is not inherited through cell division.

Dickerson D, Gierliński M, Singh V, Kitamura E, Ball G, Tanaka TU, Owen-Hughes T.

BMC Cell Biol. 2016 Sep 8;17(1):33. doi: 10.1186/s12860-016-0111-y.

6.

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ.

RNA. 2016 Jun;22(6):839-51. doi: 10.1261/rna.053959.115. Epub 2016 Mar 28. Erratum in: RNA. 2016 Oct;22(10 ):1641.

7.

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Gierliński M, Cole C, Schofield P, Schurch NJ, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson G, Owen-Hughes T, Blaxter M, Barton GJ.

Bioinformatics. 2015 Nov 15;31(22):3625-30. doi: 10.1093/bioinformatics/btv425. Epub 2015 Jul 23.

8.

Quantitative proteome analysis of temporally resolved phagosomes following uptake via key phagocytic receptors.

Dill BD, Gierlinski M, Härtlova A, Arandilla AG, Guo M, Clarke RG, Trost M.

Mol Cell Proteomics. 2015 May;14(5):1334-49. doi: 10.1074/mcp.M114.044594. Epub 2015 Mar 9.

9.

Evaluation of the diagnostic accuracy of prototype rapid tests for human African trypanosomiasis.

Sternberg JM, Gierliński M, Biéler S, Ferguson MA, Ndung'u JM.

PLoS Negl Trop Dis. 2014 Dec 18;8(12):e3373. doi: 10.1371/journal.pntd.0003373. eCollection 2014 Dec. Erratum in: PLoS Negl Trop Dis. 2015 Mar;9(3):e0003613.

10.

High-resolution quantitative proteome analysis reveals substantial differences between phagosomes of RAW 264.7 and bone marrow derived macrophages.

Guo M, Härtlova A, Dill BD, Prescott AR, Gierliński M, Trost M.

Proteomics. 2015 Sep;15(18):3169-74. doi: 10.1002/pmic.201400431. Epub 2015 Feb 5.

11.

Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects.

Saunders SP, Goh CS, Brown SJ, Palmer CN, Porter RM, Cole C, Campbell LE, Gierlinski M, Barton GJ, Schneider G, Balmain A, Prescott AR, Weidinger S, Baurecht H, Kabesch M, Gieger C, Lee YA, Tavendale R, Mukhopadhyay S, Turner SW, Madhok VB, Sullivan FM, Relton C, Burn J, Meggitt S, Smith CH, Allen MA, Barker JN, Reynolds NJ, Cordell HJ, Irvine AD, McLean WH, Sandilands A, Fallon PG.

J Allergy Clin Immunol. 2013 Nov;132(5):1121-9. doi: 10.1016/j.jaci.2013.08.046. Epub 2013 Sep 29.

12.

Stochastic association of neighboring replicons creates replication factories in budding yeast.

Saner N, Karschau J, Natsume T, Gierlinski M, Retkute R, Hawkins M, Nieduszynski CA, Blow JJ, de Moura AP, Tanaka TU.

J Cell Biol. 2013 Sep 30;202(7):1001-12. doi: 10.1083/jcb.201306143. Epub 2013 Sep 23.

13.

Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment.

Natsume T, Müller CA, Katou Y, Retkute R, Gierliński M, Araki H, Blow JJ, Shirahige K, Nieduszynski CA, Tanaka TU.

Mol Cell. 2013 Jun 6;50(5):661-74. doi: 10.1016/j.molcel.2013.05.011.

14.

Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation.

Muramoto T, Cannon D, Gierlinski M, Corrigan A, Barton GJ, Chubb JR.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7350-5. doi: 10.1073/pnas.1117603109. Epub 2012 Apr 23.

15.

Kinetochore-dependent microtubule rescue ensures their efficient and sustained interactions in early mitosis.

Gandhi SR, Gierliński M, Mino A, Tanaka K, Kitamura E, Clayton L, Tanaka TU.

Dev Cell. 2011 Nov 15;21(5):920-33. doi: 10.1016/j.devcel.2011.09.006.

16.

A quantitative spatial proteomics analysis of proteome turnover in human cells.

Boisvert FM, Ahmad Y, Gierliński M, Charrière F, Lamont D, Scott M, Barton G, Lamond AI.

Mol Cell Proteomics. 2012 Mar;11(3):M111.011429. doi: 10.1074/mcp.M111.011429. Epub 2011 Sep 21.

17.

High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli.

van Koningsbruggen S, Gierlinski M, Schofield P, Martin D, Barton GJ, Ariyurek Y, den Dunnen JT, Lamond AI.

Mol Biol Cell. 2010 Nov 1;21(21):3735-48. doi: 10.1091/mbc.E10-06-0508. Epub 2010 Sep 8.

18.

A periodicity of approximately 1 hour in X-ray emission from the active galaxy RE J1034+396.

Gierliński M, Middleton M, Ward M, Done C.

Nature. 2008 Sep 18;455(7211):369-71. doi: 10.1038/nature07277.

PMID:
18800134

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